BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11310.1
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942985 jgi|Araly1|942985|scaffold_603529.1 1805 0.0
Ahg489965 jgi|Araly1|489965|fgenesh2_kg.6__3099__AT4G11320.1 1554 0.0
> Ahg942985 jgi|Araly1|942985|scaffold_603529.1
Length=1295
Score = 1805 bits (977), Expect = 0.0
Identities = 1199/1302 (92%), Gaps = 32/1302 (2%)
Strand=Plus/Plus
Query 23 TTTAACCCCCCACaaaaaaaCATGGGTAGTGCAAAATCAGCCATGCTGATCCTCTTAGTA 82
|||||| ||||| ||||| |||||||||||||||||||||||| |||||| ||||||||
Sbjct 1 TTTAACACCCCA-AAAAACACATGGGTAGTGCAAAATCAGCCACGCTGATACTCTTAGTC 59
Query 83 GCAATGGTCATCGCATCATGTGCCACGGCCATTGATATGTCCG-TG-GT-TTCCTAC--- 136
|||||||||||| |||| |||||||||||||| || ||||||| || || ||| ||
Sbjct 60 GCAATGGTCATCACATCTTGTGCCACGGCCATGGACATGTCCGTTGTGTCCTCCAACAAT 119
Query 137 GACGAT-A----A-CA--A-------CCGTCTCCATAGCGTTTTCGATGCTGAGGCCTCG 181
|| || | | || | |||||||||||||| |||||||||||||||||||
Sbjct 120 AACCATCACTTGACCACCAGTCCTGGCCGTCTCCATAGCGGTTTCGATGCTGAGGCCTCG 179
Query 182 TTAATCTTCGAGTCATGGATGGTCAAACATGGGAAAGTGTACGGGTCCGTTGCCGAGAAG 241
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTGATCTTCGATTCATGGATGGTCAAACATGGGAAAGTGTACGGGTCCGTTGCCGAGAAG 239
Query 242 GAACGGCGTTTGACGATTTTTGAGGACAACCTCCGTTTTATCAATAACCGGAACGCTGAG 301
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 240 GAACGGCGTTTGACGATTTTCGAGGACAACCTTCGTTTTATCAATAATCGGAACGCTGAG 299
Query 302 AATCTCAGTTATCGGCTTGGTTTGACCGGGTTTGCGGATTTATCTCTTCATGAGTATAAA 361
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 300 AATCTCAGCTATCGGCTTGGTTTGACCCAGTTTGCGGATTTATCTCTTCATGAGTATGGA 359
Query 362 GAAGTTTGCCACGGGGCTGATCCAAGACCTCCTAGGAACCACGTCTTTATGACTAGTAGC 421
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct 360 GAAGTTTGCCACGGGGCTGATCCAAGACCTCCTAGGAACCACATCTTTACGACTACCAGC 419
Query 422 GACCGATACAAGACTAGTGCTGATGATGTGCTTCCTAAGTCAGTTGATTGGAGAAACGAA 481
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 420 GACCGATACAAGACTAGTGCTGGTGATGTGCTTCCTAAGTCTGTTGATTGGAGAAACGAA 479
Query 482 GGAGCAGTGACTGAAGTCAAAGATCAAGGCCATTGCAGGAGTTGTTGGGCTTTCTCGACT 541
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 GGTGCAGTGACTGAAGTCAAAGATCAAGGCCATTGCAGGAGTTGTTGGGCATTCTCGACT 539
Query 542 GTGGGAGCAGTGGAAGGCTTAAACAAGATCGTGACGGGAGAGTTAGTCACTTTGTCTGAG 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTGGGAGCAGTGGAAGGCTTAAACAAGATCGTGACGGGAGAGTTAGTCACTTTGTCTGAG 599
Query 602 CAAGATTTGATCAATTGTAACAAAGAAAACAATGGTTGCGGAGGAGGCAAACTCGAGACT 661
||||||||||| |||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 600 CAAGATTTGATTAATTGTAACAAAGAGAATAATGGTTGCGGAGGAGGCAAAGTCGAGACA 659
Query 662 GCCTATGAGTTCATCATGAAAAATGGTGGTCTTGGTACCGACAACGATTATCCTTACAAA 721
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCCTATGAGTTCATCATGAAGAATGGTGGTCTTGGTACCGACAACGATTATCCTTACAAA 719
Query 722 GCTGTTAACGGAGTCTGTGATGGCCGCCTCAAGGAAAACAACAAGAATGTTATGATTGAT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GCTGTTAACGGAGTCTGTGATGGCCGCCTCAAGGAAAACAACAAGAATGTTATGATTGAT 779
Query 782 GGGTATGAAAATTTGCCCGCAAACGACGAATCT-GCTCTCATGAAAGCGGTTGCTCACCA 840
|||| ||| |||||||| ||||||||||||| | ||||| |||||||| |||||||||||
Sbjct 780 GGGTTTGAGAATTTGCCTGCAAACGACGAAT-TAGCTCTAATGAAAGCCGTTGCTCACCA 838
Query 841 GCCTGTGACTGCCGTTATCGATTCCAGTAGCCGAGAGTTTCAGCTTTATGAATCGGGAGT 900
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 839 GCCTGTGACTGCCGTTATCGATTCCAGCAGCCGAGAGTTTCAGCTCTATGAATCGGGGGT 898
Query 901 GTTTGATGGCTCGTGTGGAACAAACCTAAACCATGGAGTTGTTGTGGTCGGGTATGGAAC 960
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 899 GTTTGATGGCTCGTGCGGAACAAACCTAAACCATGGTGTTGTTGTGGTCGGGTATGGAAC 958
Query 961 TGAGAATGGTCGTGACTACTGGCTCGTGAAAAACTCTAGGGGCATTACATGGGGAGAAGC 1020
||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 959 CGAGAACGGTCGTGACTACTGGCTCGTGAAAAACTCGAGGGGCAATACATGGGGAGAAGC 1018
Query 1021 TGGCTACATGAAGATGGCTCGAAACATTGCCAATCCAAGAGGCTTATGTGGCATTGCAAT 1080
|||||| |||||||||||||| || |||||||| |||||||| |||||||||||||| ||
Sbjct 1019 TGGCTATATGAAGATGGCTCGCAATATTGCCAACCCAAGAGGTTTATGTGGCATTGCGAT 1078
Query 1081 GCGAGCTTCATACCCTCTAAAGAACTCCTTTTCTACCGATAAAAGCTCCATCGCCTAATA 1140
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1079 GCGAGCTTCATACCCTCTCAAGAACTCGTTTTCTACCGATAAAAGCTCCATCGCCTAATA 1138
Query 1141 AAATGAGCTAAATGTATGTTATGCAAAGGATCCAGTGAGCCAGCAACCTATTCGATTGTG 1200
||| || ||||||||||||||||||| ||||| ||||||| | |||||||||||||||||
Sbjct 1139 AAAGGAACTAAATGTATGTTATGCAAGGGATCAAGTGAGCGAACAACCTATTCGATTGTG 1198
Query 1201 AAATGAAAAATAATGTAGTCGATGGGTTTTGTTTTGTAATATATTTTGGATTTGTATGGA 1260
||||||||||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 1199 ---TGAAAAATAATGTAGTCGATGGGTTTTGTTTTGTAATATATTTTGTACT-GTATGG- 1253
Query 1261 GG--G-CAATGTTTGAAGTTTGTATAATATTTATGGATATTT 1299
|| | ||| ||||| ||||||||||||||||||||||||||
Sbjct 1254 GGTTGTCAAAGTTTGGAGTTTGTATAATATTTATGGATATTT 1295
> Ahg489965 jgi|Araly1|489965|fgenesh2_kg.6__3099__AT4G11320.1
Length=1421
Score = 1554 bits (841), Expect = 0.0
Identities = 1166/1318 (88%), Gaps = 42/1318 (3%)
Strand=Plus/Plus
Query 4 AAATCAAAGTTTCATTAGTTTTAACCCCCCACaaaaaaaCATGGGTAGTGCAAAATCAGC 63
|||| ||||||| ||||||||||| || ||| |||| ||||||||||| ||||||||
Sbjct 42 AAATAAAAGTTTAATTAGTTTTAA---GCC-CAACAAAA-ATGGGTAGTGCTAAATCAGC 96
Query 64 CATGCTGA-TCCTCTTAGTAGCAATGGTCATCGCATCATGTGCCACGGCCATTGATATGT 122
|||||| | |||||||| |||||||||||||| |||| |||||||||||||| || ||||
Sbjct 97 CATGCT-AGTCCTCTTACTAGCAATGGTCATCTCATCTTGTGCCACGGCCATGGACATGT 155
Query 123 CCGTGGTTTCCTACGACGAT-A--A-CA----A-C-C--GT---------CTCCATAGCG 161
| | ||||||| | ||||| | | || | | | || | ||| | |
Sbjct 156 CTATTGTTTCCTCCAACGATAACCACCACGTGACCACTGGTCCCGGCCGCCGCCAGGGTG 215
Query 162 TTTTCGATGCTGAGGCCTCGTTAATCTTCGAGTCATGGATGGTCAAACATGGGAAAGTGT 221
||||||| ||||| ||| | || || ||||||||||||||||||||||||||||||||||
Sbjct 216 TTTTCGACGCTGAAGCCACCTTGATGTTCGAGTCATGGATGGTCAAACATGGGAAAGTGT 275
Query 222 ACGGGTCCGTTGCCGAGAAGGAACGGCGTTTGACGATTTTTGAGGACAACCTCCGTTTTA 281
||| |||||||||||||||||| |||||||| || ||||| |||||||||||||||||||
Sbjct 276 ACGAGTCCGTTGCCGAGAAGGAGCGGCGTTTAACTATTTTCGAGGACAACCTCCGTTTTA 335
Query 282 TCAATAACCGGAACGCTGAGAATCTCAGTTATCGGCTTGGTTTG-ACCGGGTTTGCGGAT 340
||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 336 TCACTAACCGGAACGCTGAGAATCTCAGTTATCGGCTTGGTTTGAACC-GGTTTGCGGAT 394
Query 341 TTATCTCTTCATGAGTATAAAGAAGTTTGCCACGGGGCTGATCCAAGACCTCCTAGGAAC 400
||||||| |||||||| | || ||||||| |||||||||||||||||||||||||||
Sbjct 395 CTATCTCTCCATGAGTACGCACAAATTTGCCATGGGGCTGATCCAAGACCTCCTAGGAAC 454
Query 401 CACGTCTTTATGACTAGTAGCGACCGATACAAGACTAGTGCTGATGATGTGCTTCCTAAG 460
|||||||| |||||||| ||| |||||||||||||||||| || |||||| |||||||||
Sbjct 455 CACGTCTTCATGACTAGCAGCAACCGATACAAGACTAGTGATGGTGATGTTCTTCCTAAG 514
Query 461 TCAGTTGATTGGAGAAACGAAGGAGCAGTGACTGAAGTCAAAGATCAAGGCCATTGCAGG 520
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 515 TCCGTTGACTGGAGAAACGAAGGCGCAGTGACTGAAGTCAAAGATCAAGGCCAATGCAGG 574
Query 521 AGTTGTTGGGC-TTTCTCGACTGTGGGAGCAGTGGAAGGCTTAAACAAGATCGTGACGGG 579
||||||||||| ||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 575 AGTTGTTGGGCATTT-TCGACTGTGGGGGCAGTGGAAGGCTTAAACAAAATCGTGACGGG 633
Query 580 AGAGTTAGTCACTTTGTCTGAGCAAGATTTGATCAATTGTAACAAAGAAAACAATGGTTG 639
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 634 AGAGTTAGTCACTTTGTCTGAGCAAGATTTGATTAATTGCAACAAAGAAAACAATGGTTG 693
Query 640 CGGAGGAGGCAAACTCGAGACTGCCTATGAGTTCATCATGAAAAATGGTGGTCTTGGTAC 699
||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 694 CGGAGGAGGCAAAGTCGAGACGGCCTATGAGTTCATCATGAACAATGGTGGTCTTGGTAC 753
Query 700 CGACAACGATTATCCTTACAAAGCTGTTAACGGAGTCTGTGATGGCCGCCTCAAGGAAAA 759
||| ||||||||||||||||||||| |||| |||||||| ||| |||||||||||||||
Sbjct 754 CGATAACGATTATCCTTACAAAGCTCTTAATGGAGTCTGCAATGACCGCCTCAAGGAAAA 813
Query 760 CAACAAGAATGTTATGATTGATGGGTATGAAAATTTGCCCGCAAACGACGAATCTGCTCT 819
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 814 CAACAAGAATGTTATGATTGATGGGTATGAGAATTTGCCTGCAAACGACGAATCTGCTCT 873
Query 820 CATGAAAGCGGTTGCTCACCAGCCTGTGACTGCCGTTATCGATTCCAGTAGCCGAGAGTT 879
||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 874 CATGAAAGCGGTTGCTCACCAGCCTGTGACTGCCGTTGTTGATTCCAGCAGCCGAGAGTT 933
Query 880 TCAGCTTTATGAATCGGGAGTGTTTGATGGCTCGTGTGGAACAAACCTAAACCATGGAGT 939
||||||||||| ||||||||| |||||||| | || ||||||||| |||||||||| ||
Sbjct 934 TCAGCTTTATGCATCGGGAGTATTTGATGGAACTTGCGGAACAAACTTAAACCATGGTGT 993
Query 940 TGTTGTGGTCGGGTATGGAACTGAGAATGGTCGTGACTACTGGCTCGTGAAAAACTCTAG 999
||||||||||||||||||||| ||||| ||||||||||||||| |||||| |||||| ||
Sbjct 994 TGTTGTGGTCGGGTATGGAACCGAGAACGGTCGTGACTACTGGATCGTGAGAAACTCGAG 1053
Query 1000 GGGC-ATTACATGGGGAGAAGCTGGCTACATGAAGATGGCTCGAAACATTGCCAATCCAA 1058
||| | |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1054 GGGGGAC-ACATGGGGGGAAGCTGGCTACATGAAGATGGCTCGCAACATTGCCAATCCAA 1112
Query 1059 GAGGCTTATGTGGCATTGCAATGCGAGCTTCATACCCTCTAAAGAACTCCTTTTCTACCG 1118
|||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 1113 GAGGCTTATGTGGCATCGCAATGCGAGCTTCATACCCTCTCAAGAACTCGTTTTCTACTG 1172
Query 1119 ATAAAAGCTCCATCGCCTAATAAAATGAGCTAAATGTATGTTATGCAAAGGATCCAGTGA 1178
|||||| || ||||||||||| |||| |||||||||||| |||| | | ||| | |||
Sbjct 1173 ATAAAATTTCGGTCGCCTAATAATATGAACTAAATGTATGTCATGCCATGCATCGATTGA 1232
Query 1179 GCCAGCAACCTA-TTCGA-TT-GT-G-AAA-TGAAAAAT-AATGTAGTCGATGGGTTTTG 1231
||||||||| || ||||| || | | ||| | |||||| |||||||||||| ||||| |
Sbjct 1233 GCCAGCAACGTAATTCGACTTTGAAGGAAAATAAAAAATTAATGTAGTCGATTGGTTTGG 1292
Query 1232 TTTTGTAATATATTTTGGATTTGTATGGAGGGCAATGTTTGAAGTTTGTATAATATTT 1289
|||||| |||||||||| ||||||||| || ||||||||| ||||||||||||||||
Sbjct 1293 TTTTGTTATATATTTTGCATTTGTATGT-GGTCAATGTTTGGAGTTTGTATAATATTT 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50017267104
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5