BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11320.1
Length=1430
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489965 jgi|Araly1|489965|fgenesh2_kg.6__3099__AT4G11320.1 2067 0.0
Ahg942985 jgi|Araly1|942985|scaffold_603529.1 1509 0.0
> Ahg489965 jgi|Araly1|489965|fgenesh2_kg.6__3099__AT4G11320.1
Length=1421
Score = 2067 bits (1119), Expect = 0.0
Identities = 1331/1431 (93%), Gaps = 23/1431 (2%)
Strand=Plus/Plus
Query 10 AAAATCCTCTTCTCTTCTTTAATAACTT----TTAGAAACACAAATAAAAGTTTAATTAC 65
|||| ||||||||| ||||||||||||| | |||||||||||||||||||||||
Sbjct 1 AAAA-CCTCTTCTCCTCTTTAATAACTTGCAAAAACAAACACAAATAAAAGTTTAATTAG 59
Query 66 TTTTAAGCCCAACAAAAATGGGTTA-TGCTAAATCAGCCATGCTGA-TCTTCTTACTAGC 123
|||||||||||||||||||||| || |||||||||||||||||| | || ||||||||||
Sbjct 60 TTTTAAGCCCAACAAAAATGGG-TAGTGCTAAATCAGCCATGCT-AGTCCTCTTACTAGC 117
Query 124 ATTGGTCATCGCATCTTGTGCCACGGCCATGGACATGTCCGTTGTTTCCTCCAACGATAA 183
| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 118 AATGGTCATCTCATCTTGTGCCACGGCCATGGACATGTCTATTGTTTCCTCCAACGATAA 177
Query 184 CCACCACGTGACCGCCGGTCCCGGCCGCCGTCAGGGTATTTTCGACGCTGAAGCCACCTT 243
||||||||||||| | |||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 178 CCACCACGTGACCACTGGTCCCGGCCGCCGCCAGGGTGTTTTCGACGCTGAAGCCACCTT 237
Query 244 GATGTTCGAGTCATGGATGGTCAAACATGGGAAAGTGTACGACTCCGTTGCCGAGAAGGA 303
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 238 GATGTTCGAGTCATGGATGGTCAAACATGGGAAAGTGTACGAGTCCGTTGCCGAGAAGGA 297
Query 304 ACGGCGTTTAACTATTTTTGAGGACAACCTCCGTTTTATCACTAACCGGAACGCTGAGAA 363
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GCGGCGTTTAACTATTTTCGAGGACAACCTCCGTTTTATCACTAACCGGAACGCTGAGAA 357
Query 364 TCTCAGTTACCGGCTTGGTTTGAATCGGTTTGCGGATTTATCTCTCCATGAATACGGAGA 423
||||||||| |||||||||||||| |||||||||||| ||||||||||||| |||| | |
Sbjct 358 TCTCAGTTATCGGCTTGGTTTGAACCGGTTTGCGGATCTATCTCTCCATGAGTACGCACA 417
Query 424 AATTTGCCATGGGGCTGATCCAAGACCTCCTAGGAACCACGTCTTCATGACTAGCAGCAA 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AATTTGCCATGGGGCTGATCCAAGACCTCCTAGGAACCACGTCTTCATGACTAGCAGCAA 477
Query 484 CCGATACAAGACTAGTGATGGTGATGTTCTTCCTAAGTCCGTTGACTGGAGAAACGAAGG 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CCGATACAAGACTAGTGATGGTGATGTTCTTCCTAAGTCCGTTGACTGGAGAAACGAAGG 537
Query 544 CGCAGTGACTGAAGTCAAAGATCAAGGCCTTTGCAGGAGTTGTTGGGC-TTTCTCCACTG 602
||||||||||||||||||||||||||||| ||||||||||||||||| ||| || ||||
Sbjct 538 CGCAGTGACTGAAGTCAAAGATCAAGGCCAATGCAGGAGTTGTTGGGCATTT-TCGACTG 596
Query 603 TGGGAGCAGTGGAAGGCTTAAACAAGATTGTGACTGGAGAGCTAGTAACTTTGTCTGAGC 662
|||| |||||||||||||||||||| || ||||| |||||| |||| |||||||||||||
Sbjct 597 TGGGGGCAGTGGAAGGCTTAAACAAAATCGTGACGGGAGAGTTAGTCACTTTGTCTGAGC 656
Query 663 AAGATTTGATCAATTGTAACAAAGAAAACAATGGTTGCGGAGGAGGCAAAGTCGAGACAG 722
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 657 AAGATTTGATTAATTGCAACAAAGAAAACAATGGTTGCGGAGGAGGCAAAGTCGAGACGG 716
Query 723 CCTATGAGTTCATCATGAACAATGGTGGTCTTGGTACCGACAACGATTATCCTTACAAAG 782
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 717 CCTATGAGTTCATCATGAACAATGGTGGTCTTGGTACCGATAACGATTATCCTTACAAAG 776
Query 783 CTCTCAATGGAGTCTGCGAAGG-CCGCCTCAAGGAAGACAACAAGAATGTTATGATTGAT 841
|||| |||||||||||| || | ||||||||||||| |||||||||||||||||||||||
Sbjct 777 CTCTTAATGGAGTCTGC-AATGACCGCCTCAAGGAAAACAACAAGAATGTTATGATTGAT 835
Query 842 GGGTATGAGAATTTGCCTGCAAACGATGAAGCCGCTCTCATGAAAGCGGTTGCTCACCAG 901
|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 836 GGGTATGAGAATTTGCCTGCAAACGACGAATCTGCTCTCATGAAAGCGGTTGCTCACCAG 895
Query 902 CCTGTGACTGCCGTTGTCGATTCCAGCAGCCGAGAGTTTCAGCTTTATGAATCGGGAGTG 961
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 896 CCTGTGACTGCCGTTGTTGATTCCAGCAGCCGAGAGTTTCAGCTTTATGCATCGGGAGTA 955
Query 962 TTTGACGGAACTTGCGGAACAAACCTAAACCATGGTGTTGTTGTGGTCGGGTATGGAACC 1021
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 956 TTTGATGGAACTTGCGGAACAAACTTAAACCATGGTGTTGTTGTGGTCGGGTATGGAACC 1015
Query 1022 GAGAATGGTCGTGACTACTGGATTGTGAAAAACTCGAGGGGCGACACATGGGGGGAGGCT 1081
||||| ||||||||||||||||| |||| |||||||||||| |||||||||||||| |||
Sbjct 1016 GAGAACGGTCGTGACTACTGGATCGTGAGAAACTCGAGGGGGGACACATGGGGGGAAGCT 1075
Query 1082 GGCTACATGAAGATGGCTCGCAACATTGCCAATCCAAGAGGCCTATGTGGCATCGCAATG 1141
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1076 GGCTACATGAAGATGGCTCGCAACATTGCCAATCCAAGAGGCTTATGTGGCATCGCAATG 1135
Query 1142 CGAGCTTCATACCCTCTCAAGAACTCGTTTTCTACGGATAAAGTTTCGGTTGCCTAATAA 1201
||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||
Sbjct 1136 CGAGCTTCATACCCTCTCAAGAACTCGTTTTCTACTGATAAAATTTCGGTCGCCTAATAA 1195
Query 1202 TATGAACTAAATGTATGCCATGGAACGGATCGGTTAAGCCATTATCGTTATTCGACTTTG 1261
||||||||||||||||| |||| | | |||| || ||||| | ||| |||||||||||
Sbjct 1196 TATGAACTAAATGTATGTCATGCCATGCATCGATTGAGCCAGCAACGTAATTCGACTTTG 1255
Query 1262 AAGGAAACTAAAAAAT-AATGTGGTCGATTGGTTTGGTTTTGTTATATATTATGCATTTG 1320
||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1256 AAGGAAAATAAAAAATTAATGTAGTCGATTGGTTTGGTTTTGTTATATATTTTGCATTTG 1315
Query 1321 TATGGGGGTCAGTCAATGTTTGAACTTTGTATAATATTTCTTTGGGTCTAGTGAT-AA-- 1377
|||| || ||| | |||||| | |||||||||||||||||||||||||| ||| ||
Sbjct 1316 TATGTGG-TCA---A-TGTTTGGAGTTTGTATAATATTTCTTTGGGTCTAGAGATGAATT 1370
Query 1378 A-TATTTTCCCTTTTGCGAAAAAGGTACTTGTGTGAGACGAGATTGATGAG 1427
| ||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1371 AATATTTTCCCTTTTGCCAAAAAAATACTTGTGTGAGACGAGATTGATGAG 1421
> Ahg942985 jgi|Araly1|942985|scaffold_603529.1
Length=1295
Score = 1509 bits (817), Expect = 0.0
Identities = 1140/1295 (88%), Gaps = 26/1295 (2%)
Strand=Plus/Plus
Query 73 CCCAACAAA-A-ATGGGTTA-TGCTAAATCAGCCATGCTGAT-CTTCTTACTAGCATTGG 128
||||| ||| | ||||| || ||| |||||||||| |||||| | ||||| | ||| |||
Sbjct 9 CCCAAAAAACACATGGG-TAGTGCAAAATCAGCCACGCTGATAC-TCTTAGTCGCAATGG 66
Query 129 TCATCGCATCTTGTGCCACGGCCATGGACATGTCCGTTGTTTCCTCCAACGATAACCACC 188
||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
Sbjct 67 TCATCACATCTTGTGCCACGGCCATGGACATGTCCGTTGTGTCCTCCAACAATAACCATC 126
Query 189 ACGTGACCGCCGGTCCCGGCCGCCGT-CAGGGTATTTTCGACGCTGAAGCCAC-CTTGAT 246
|| ||||| || |||| ||||| | | || | |||||| ||||| ||| | | ||||
Sbjct 127 ACTTGACCACCAGTCCTGGCCGTC-TCCATAGCGGTTTCGATGCTGAGGCCTCGC-TGAT 184
Query 247 GTTCGAGTCATGGATGGTCAAACATGGGAAAGTGTACGACTCCGTTGCCGAGAAGGAACG 306
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 185 CTTCGATTCATGGATGGTCAAACATGGGAAAGTGTACGGGTCCGTTGCCGAGAAGGAACG 244
Query 307 GCGTTTAACTATTTTTGAGGACAACCTCCGTTTTATCACTAACCGGAACGCTGAGAATCT 366
|||||| || ||||| ||||||||||| |||||||||| ||| |||||||||||||||||
Sbjct 245 GCGTTTGACGATTTTCGAGGACAACCTTCGTTTTATCAATAATCGGAACGCTGAGAATCT 304
Query 367 CAGTTACCGGCTTGGTTTGAATCGGTTTGCGGATTTATCTCTCCATGAATACGGAGAAAT 426
||| || ||||||||||||| | |||||||||||||||||| ||||| || |||||| |
Sbjct 305 CAGCTATCGGCTTGGTTTGACCCAGTTTGCGGATTTATCTCTTCATGAGTATGGAGAAGT 364
Query 427 TTGCCATGGGGCTGATCCAAGACCTCCTAGGAACCACGTCTTCATGACTAGCAGCAACCG 486
|||||| |||||||||||||||||||||||||||||| |||| | ||||| |||| ||||
Sbjct 365 TTGCCACGGGGCTGATCCAAGACCTCCTAGGAACCACATCTTTACGACTACCAGCGACCG 424
Query 487 ATACAAGACTAGTGATGGTGATGTTCTTCCTAAGTCCGTTGACTGGAGAAACGAAGGCGC 546
|||||||||||||| ||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct 425 ATACAAGACTAGTGCTGGTGATGTGCTTCCTAAGTCTGTTGATTGGAGAAACGAAGGTGC 484
Query 547 AGTGACTGAAGTCAAAGATCAAGGCCTTTGCAGGAGTTGTTGGGCTTTCTCCACTGTGGG 606
|||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||
Sbjct 485 AGTGACTGAAGTCAAAGATCAAGGCCATTGCAGGAGTTGTTGGGCATTCTCGACTGTGGG 544
Query 607 AGCAGTGGAAGGCTTAAACAAGATTGTGACTGGAGAGCTAGTAACTTTGTCTGAGCAAGA 666
|||||||||||||||||||||||| ||||| |||||| |||| |||||||||||||||||
Sbjct 545 AGCAGTGGAAGGCTTAAACAAGATCGTGACGGGAGAGTTAGTCACTTTGTCTGAGCAAGA 604
Query 667 TTTGATCAATTGTAACAAAGAAAACAATGGTTGCGGAGGAGGCAAAGTCGAGACAGCCTA 726
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 605 TTTGATTAATTGTAACAAAGAGAATAATGGTTGCGGAGGAGGCAAAGTCGAGACAGCCTA 664
Query 727 TGAGTTCATCATGAACAATGGTGGTCTTGGTACCGACAACGATTATCCTTACAAAGCTCT 786
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 665 TGAGTTCATCATGAAGAATGGTGGTCTTGGTACCGACAACGATTATCCTTACAAAGCTGT 724
Query 787 CAATGGAGTCTGCGAAGGCCGCCTCAAGGAAGACAACAAGAATGTTATGATTGATGGGTA 846
|| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 725 TAACGGAGTCTGTGATGGCCGCCTCAAGGAAAACAACAAGAATGTTATGATTGATGGGTT 784
Query 847 TGAGAATTTGCCTGCAAACGATGAAGCCGCTCTCATGAAAGCGGTTGCTCACCAGCCTGT 906
||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||
Sbjct 785 TGAGAATTTGCCTGCAAACGACGAATTAGCTCTAATGAAAGCCGTTGCTCACCAGCCTGT 844
Query 907 GACTGCCGTTGTCGATTCCAGCAGCCGAGAGTTTCAGCTTTATGAATCGGGAGTGTTTGA 966
|||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 845 GACTGCCGTTATCGATTCCAGCAGCCGAGAGTTTCAGCTCTATGAATCGGGGGTGTTTGA 904
Query 967 CGGAACTTGCGGAACAAACCTAAACCATGGTGTTGTTGTGGTCGGGTATGGAACCGAGAA 1026
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TGGCTCGTGCGGAACAAACCTAAACCATGGTGTTGTTGTGGTCGGGTATGGAACCGAGAA 964
Query 1027 TGGTCGTGACTACTGGATTGTGAAAAACTCGAGGGGCGACACATGGGGGGAGGCTGGCTA 1086
||||||||||||||| | |||||||||||||||||| | |||||||| || ||||||||
Sbjct 965 CGGTCGTGACTACTGGCTCGTGAAAAACTCGAGGGGCAATACATGGGGAGAAGCTGGCTA 1024
Query 1087 CATGAAGATGGCTCGCAACATTGCCAATCCAAGAGGCCTATGTGGCATCGCAATGCGAGC 1146
||||||||||||||||| |||||||| |||||||| |||||||||| || ||||||||
Sbjct 1025 TATGAAGATGGCTCGCAATATTGCCAACCCAAGAGGTTTATGTGGCATTGCGATGCGAGC 1084
Query 1147 TTCATACCCTCTCAAGAACTCGTTTTCTACGGATAAA-GTTTCGGTTGCCTAATAATATG 1205
|||||||||||||||||||||||||||||| |||||| | | | | ||||||||| | |
Sbjct 1085 TTCATACCCTCTCAAGAACTCGTTTTCTACCGATAAAAGCTCCA-TCGCCTAATAAAAGG 1143
Query 1206 AACTAAATGTATGCCATGGAACGGATCG-GTTAAGCCATTATCGTTATTCGACTTTGAAG 1264
||||||||||||| ||| || ||||| || | || | | | | |||||| || | |
Sbjct 1144 AACTAAATGTATGTTATGCAAGGGATCAAGTGA-GCGAACAACCT-ATTCGA-TT-GT-G 1198
Query 1265 GAAACTAAAAAATAATGTGGTCGATTGGTTTGGTTTTGTTATATATTATGCATTTGTATG 1324
| ||||||||||| |||||| ||||| ||||||| ||||||| || | | |||||
Sbjct 1199 -----TGAAAAATAATGTAGTCGATGGGTTTTGTTTTGTAATATATTTTGTACT-GTATG 1252
Query 1325 GGGGTCAGTCAATGTTTGAACTTTGTATAATATTT 1359
||| | ||||| ||||| | ||||||||||||||
Sbjct 1253 GGGTT--GTCAAAGTTTGGAGTTTGTATAATATTT 1285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53478703980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5