BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11330.1
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942987 jgi|Araly1|942987|scaffold_603531.1 1834 0.0
> Ahg942987 jgi|Araly1|942987|scaffold_603531.1
Length=1173
Score = 1834 bits (993), Expect = 0.0
Identities = 1108/1164 (95%), Gaps = 6/1164 (1%)
Strand=Plus/Plus
Query 78 ATTTGaaaaaaaTGGCGAAGGAAATTGAATCAGCGACAGATTTAGGTGATACTAACATCA 137
||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||
Sbjct 12 ATTTGAAAAAAATGGATAAGGAAATTGAATCAGCGGCAGATCCAGGTGATACTAACATCA 71
Query 138 AAGGAGTTCTTGTTCATGGAGGAAGATATTTTCAATACAATGTTTATGGAAACTTGTTTG 197
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 72 AAGGAGTTCTTGTTCATGGAGGAAGATATTTTCAATACAATGTTTATGGAAACTTGTTCG 131
Query 198 AAGTTTCTAATAAGTATGTTCCTCCTATTCGACCTATTGGTAGAGGAGCTTACGGTTTTG 257
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 AAGTCTCGAATAAATATGTTCCTCCTATTCGACCTATTGGTAGAGGAGCTTACGGTTTTG 191
Query 258 TCTGTGCTGCAGTAGATTCGGAGACACACGAAGAGATTGCGATAAAGAAGATAGGTAAAG 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 TCTGTGCTGCAGTAGATTCGGAGACACACGAAGAGATTGCGATAAAGAAGATAGGTAAAG 251
Query 318 CCTTTGATAATAAAGTAGATGC-AAAGAGAACATTGAGAGAGATTAAGCTACTTCGTCAT 376
|||||||||||||||||||||| ||| || || |||||||||||||||||||||||||||
Sbjct 252 CCTTTGATAATAAAGTAGATGCTAAA-AGGACGTTGAGAGAGATTAAGCTACTTCGTCAT 310
Query 377 TTAGAACACGAGAACGTTGTTGTTATAAAAGATATCATTAGACCACCAAAGAAGGAAGAT 436
|| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 311 TTGGAACACGAAAACGTTGTTGTTATAAAAGATATCATAAGACCACCAAAGAAGGAAGAT 370
Query 437 TTCGTTGATGTTTATATAGTTTTTGAGTTAATGGATACTGATCTTCATCAGATTATTCGA 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TTCGTTGATGTTTATATAGTTTTTGAGTTAATGGATACTGATCTTCATCAGATTATTCGA 430
Query 497 TCAAACCAATCTTTGAATGATGATCATTGTCAGTACTTCTTGTATCAGATTCTACGAGGA 556
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TCAGACCAACCTTTGAATGATGATCATTGTCAGTACTTCTTGTATCAGATTCTACGAGGA 490
Query 557 CTCAAATATATTCATTCAGCAAATGTTTTACATCGTGACCTTAAGCCGAGTAATTTGCTT 616
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 491 ATAAAATATATTCATTCAGCAAATGTCTTACATCGTGACCTTAAGCCGAGTAATTTGCTT 550
Query 617 TTGAATTCGAATTGCGATCTTAAGATTACTGACTTTGGTTTGGCAAGGACTACATCAGAA 676
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 551 CTGAATTCGAATTGTGATCTTAAGATTACGGACTTTGGTTTGGCAAGGACGACATCTGAA 610
Query 677 ACAGAGTATATGACAGAGTATGTTGTAACACGATGGTACAGAGCACCAGAGCTGCTTCTT 736
||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 611 ACAGAGTTTATGACAGAGTATGTTGTAACTCGATGGTACCGAGCACCAGAGCTGCTTCTT 670
Query 737 AATAGTTCTGAGTATACATCTGCTATTGATGTATGGTCTGTTGGTTGCATATTTGCTGAG 796
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 671 AATAGTTCAGAGTATACATCTGCAATTGATGTTTGGTCTGTTGGTTGCATATTTGCTGAG 730
Query 797 ATTATGACAAGGGAACCGCTTTTCCCGGGGAAGGATTACGTTCATCAGCTTAAACTTATC 856
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 731 ATTATGACAAGGGAACCGCTTTTCCCGGGGAAAGACTATGTTCATCAGCTTAAACTTATC 790
Query 857 ACTGAGTTGATAGGATCACCTGATGGAGCGAGTCTAGAGTTTCTCAGAAGCGCGAACGCG 916
|| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 791 ACCGAGTTGATAGGATCACCTGATGGAGCGAGCCTAGAGTTTCTCAGAAGCGAGAACGCG 850
Query 917 AGAAAATATGTTAAGGAGCTACCTAAGTTCCCAAGACAAAACTTTTCAGCTAGGTTTCCT 976
||||||||||||||||| |||||||||||||| || || |||||||||||||| ||||||
Sbjct 851 AGAAAATATGTTAAGGAACTACCTAAGTTCCCGAGGCAGAACTTTTCAGCTAGATTTCCT 910
Query 977 AGTATGAATTCTACAGCTATCGATCTACTAGAGAAAATGCTCGTGTTTGATCCAGTAAAA 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 911 AGTATGAATTCTACAGCTATCGATCTACTAGAGAAAATGCTCGTGTTTGATCCAGCAAAA 970
Query 1037 CGTATCACGGTTGAGGAAGCACTGTGTTATCCTTACTTGTCAGCTCTTCACGACCTTAAC 1096
||||||||||||||||||||||||||| |||| || || |||||||||||||||||||||
Sbjct 971 CGTATCACGGTTGAGGAAGCACTGTGTCATCCCTATTTATCAGCTCTTCACGACCTTAAC 1030
Query 1097 GACGAGCCTGTTTGTTCCAACCATTTCAGTTTCCATTTTGAGGATCCGTCTTCCACTGAA 1156
|| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1031 GATGAGCCTGTTTGTTCCAACCATTTCAGTTTCGATTTTGAGGACCCGTCTTCCACTGAA 1090
Query 1157 GAAGAGAT-AAAGGAGCTTGTGTGGCTCGAATCTGTGAAGTTCAATCCTC-TGCCGAGCA 1214
|||||||| |||| |||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 1091 GAAGAGATTAAAG-AGCTTGTGTGGCTCGAATCTGTGAAGTTCAATCCTCAT-CCGACCA 1148
Query 1215 TTTAAAACATTATTTAAGAAGGGG 1238
||||||||||||||||||||||||
Sbjct 1149 TTTAAAACATTATTTAAGAAGGGG 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57021096765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5