BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11340.1
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895306 jgi|Araly1|895306|Al_scaffold_0006_3302 1280 0.0
> Ahg895306 jgi|Araly1|895306|Al_scaffold_0006_3302
Length=975
Score = 1280 bits (693), Expect = 0.0
Identities = 911/1009 (90%), Gaps = 44/1009 (4%)
Strand=Plus/Plus
Query 424 gatgatgatgaa-tgg-g-tg-atgatCATCATC-A-CGCATTATCATCTAGACCTAGAC 477
|||||||||||| ||| | || ||||| | |||| | ||| |||||||||||||||||
Sbjct 1 GATGATGATGAATTGGTGATGAATGATGAACATCAATATCATCATCATCTAGACCTAGAC 60
Query 478 AAAACCGAAATGATAGAGTGCAAAGCGGTTGCAGCGATCCGCGATTTGATCTGCCCGCGT 537
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAACTGAAATAATAGAGTGCAAAGCGGTTGCAGCGATCCGCGATTTGATCTGCCCGCGT 120
Query 538 CTTGGAATCATCCGAAGTTCTTCAGAAGGAGCGGTAGAGATACATATTATGGTGTTGCTA 597
||||||||||| | | | |||||| |||| || |||||||||||||||
Sbjct 121 CTTGGAATCAT-C------C-T-------AGCGGTTGAGACACGGATTATGGTGTTGCTA 165
Query 598 GTGGAAGCTGCTTGGTTTCTTGAGTCGCTGACAGAGAAGGTATTGGCCG-TGAAGGGCAG 656
|||||||| | | | | || | | | || | |||||| || |||||||||
Sbjct 166 GTGGAAGC-G---AG---C-T--GT-G-T--TA-AG-A--TATTGG-CGATGAAGGGCAT 206
Query 657 AGCTCCGCCCCAACATCAAGTGTTTGTAAGTTTCCGAGGCAGCGACGTTCGCTATAACTT 716
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 207 AGCTCCGCCGCAACATCAAGTGTTCGTAAGTTTCCGAGGCAGCGACGTCCGCTATAACTT 266
Query 717 CTTCAGCTTTCTTAAAGACGCATTGATAAAGAATGGTATCAACGTGGTAACGGACGAGGA 776
|||||||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||||
Sbjct 267 CTTCAGCTTTCTCAAAGATGCATTGGTAAAGAACGGTATCAATGTGGTAACGGACGAGGA 326
Query 777 CGCACCTAGGGGAAAACCAATCGATGAGAATCTTTTGAAGCTTATAAAAGACTCGAGGAT 836
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 327 CGCACCTAGGGGAAAACCCATCGATGAGAATCTTTTGAAGCTTATAAAAGACTCGAGGAT 386
Query 837 CGCTGTCGTGATCTTCTCGGAAAACTATCCGGAGTCCACTTGGTGCTTAGACGAGTTGGT 896
|||| | ||||||||||| ||||||||||| || || |||||||| ||||||||||||||
Sbjct 387 CGCTATTGTGATCTTCTCCGAAAACTATCCCGAATCGACTTGGTGTTTAGACGAGTTGGT 446
Query 897 GGAGATCGAGAAACAAATGGATCTTAAGATGCTTGATTCTTGTCCTATCTTTTTTGAGGT 956
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 447 GGAGATCGAGAAACAAATGGACCTTAAGATGCTTGATTCTTGTCCTATCTTTTTTGAGGT 506
Query 957 TGAGACTTGTCACGTTAAACTTCAGGTCGCAAGAAGTACTTTCAACTACAATCTACTGCA 1016
|||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct 507 TGAGACTTGTCACGTTAAACTTCAAGTCGCGAGAAGTACTTTCAACAACAATCTACTGCA 566
Query 1017 GTTGGAGCACGATGAGCGGAAGAAAGCTAGGCAGATTAGTAAGAAGGCTTGGGAGGATGC 1076
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 567 GTTGGAGCATGATGAGCGGAAAAAAGCTAGGCAGATTAGTAAGAAGGCTTGGGAGGATGC 626
Query 1077 AGAGAAGAGATTCGAAGGATGGAGAAAAGCTTTGATTTCGGTCGCGTCTCGCTTGGGCTT 1136
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 627 AGAGAAGAGATTCGAGGGATGGAGAAAAGCTTTGATTTCGGTCTCGTCTCGCTTGGGCTT 686
Query 1137 AACATATAAGAAGGGGAGCAACCAAGCAACCTTCGTAAATGAAATCGTCGAGAAGGTTAA 1196
||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 687 AACATATAAGAAGGG-A--AACCAAGCAACCTTCGTAAATGAAATCGTCCAGAAGGTTAA 743
Query 1197 GGCAATGCTTGACAACGTTTCCTCATCACACATTACGCCGCAACATCAAGTTTACATAAG 1256
||||||||| || |||||||||||| |||||||| ||||||||||||||| ||||||||
Sbjct 744 GGCAATGCTGGATAACGTTTCCTCACCACACATTGTGCCGCAACATCAAGTGTACATAAG 803
Query 1257 TTTTCGGAGTCGAGAGATCCGCAACAAGTTCTCCAGCCTTCTTAGAGCCGCGTTACGAAG 1316
||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 804 TTTCCGGAGTCAAGAGATCCGCAACAAGTTCTCCAGCCTTCTTAGAGCCGCTTTACGAAG 863
Query 1317 GAGTGGGATCAACGTCCTTCTAGATGATGAAAATATCACTCGAATAGAGTCAAGAGACGA 1376
|||||||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct 864 GAGTGGGATCAACGTCTTTCTAGATGATGAAAATATTACTAGAATAGAGTCGAGAGACGA 923
Query 1377 AGTTGATAGACTTTTTTGTCGAGTTTCGAGAGTGAAGGATCGAACTAGT 1425
|||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 924 AGTTGATAGACTTTTTTGTCGAGTCTCGAGAGTCAAGGATCGAACTAGT 972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55687938190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5