BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11340.1 Length=1488 Score E Sequences producing significant alignments: (Bits) Value Ahg895306 jgi|Araly1|895306|Al_scaffold_0006_3302 1280 0.0 > Ahg895306 jgi|Araly1|895306|Al_scaffold_0006_3302 Length=975 Score = 1280 bits (693), Expect = 0.0 Identities = 911/1009 (90%), Gaps = 44/1009 (4%) Strand=Plus/Plus Query 424 gatgatgatgaa-tgg-g-tg-atgatCATCATC-A-CGCATTATCATCTAGACCTAGAC 477 |||||||||||| ||| | || ||||| | |||| | ||| ||||||||||||||||| Sbjct 1 GATGATGATGAATTGGTGATGAATGATGAACATCAATATCATCATCATCTAGACCTAGAC 60 Query 478 AAAACCGAAATGATAGAGTGCAAAGCGGTTGCAGCGATCCGCGATTTGATCTGCCCGCGT 537 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAAACTGAAATAATAGAGTGCAAAGCGGTTGCAGCGATCCGCGATTTGATCTGCCCGCGT 120 Query 538 CTTGGAATCATCCGAAGTTCTTCAGAAGGAGCGGTAGAGATACATATTATGGTGTTGCTA 597 ||||||||||| | | | |||||| |||| || ||||||||||||||| Sbjct 121 CTTGGAATCAT-C------C-T-------AGCGGTTGAGACACGGATTATGGTGTTGCTA 165 Query 598 GTGGAAGCTGCTTGGTTTCTTGAGTCGCTGACAGAGAAGGTATTGGCCG-TGAAGGGCAG 656 |||||||| | | | | || | | | || | |||||| || ||||||||| Sbjct 166 GTGGAAGC-G---AG---C-T--GT-G-T--TA-AG-A--TATTGG-CGATGAAGGGCAT 206 Query 657 AGCTCCGCCCCAACATCAAGTGTTTGTAAGTTTCCGAGGCAGCGACGTTCGCTATAACTT 716 ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 207 AGCTCCGCCGCAACATCAAGTGTTCGTAAGTTTCCGAGGCAGCGACGTCCGCTATAACTT 266 Query 717 CTTCAGCTTTCTTAAAGACGCATTGATAAAGAATGGTATCAACGTGGTAACGGACGAGGA 776 |||||||||||| ||||| |||||| ||||||| |||||||| ||||||||||||||||| Sbjct 267 CTTCAGCTTTCTCAAAGATGCATTGGTAAAGAACGGTATCAATGTGGTAACGGACGAGGA 326 Query 777 CGCACCTAGGGGAAAACCAATCGATGAGAATCTTTTGAAGCTTATAAAAGACTCGAGGAT 836 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 327 CGCACCTAGGGGAAAACCCATCGATGAGAATCTTTTGAAGCTTATAAAAGACTCGAGGAT 386 Query 837 CGCTGTCGTGATCTTCTCGGAAAACTATCCGGAGTCCACTTGGTGCTTAGACGAGTTGGT 896 |||| | ||||||||||| ||||||||||| || || |||||||| |||||||||||||| Sbjct 387 CGCTATTGTGATCTTCTCCGAAAACTATCCCGAATCGACTTGGTGTTTAGACGAGTTGGT 446 Query 897 GGAGATCGAGAAACAAATGGATCTTAAGATGCTTGATTCTTGTCCTATCTTTTTTGAGGT 956 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 447 GGAGATCGAGAAACAAATGGACCTTAAGATGCTTGATTCTTGTCCTATCTTTTTTGAGGT 506 Query 957 TGAGACTTGTCACGTTAAACTTCAGGTCGCAAGAAGTACTTTCAACTACAATCTACTGCA 1016 |||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| Sbjct 507 TGAGACTTGTCACGTTAAACTTCAAGTCGCGAGAAGTACTTTCAACAACAATCTACTGCA 566 Query 1017 GTTGGAGCACGATGAGCGGAAGAAAGCTAGGCAGATTAGTAAGAAGGCTTGGGAGGATGC 1076 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 567 GTTGGAGCATGATGAGCGGAAAAAAGCTAGGCAGATTAGTAAGAAGGCTTGGGAGGATGC 626 Query 1077 AGAGAAGAGATTCGAAGGATGGAGAAAAGCTTTGATTTCGGTCGCGTCTCGCTTGGGCTT 1136 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 627 AGAGAAGAGATTCGAGGGATGGAGAAAAGCTTTGATTTCGGTCTCGTCTCGCTTGGGCTT 686 Query 1137 AACATATAAGAAGGGGAGCAACCAAGCAACCTTCGTAAATGAAATCGTCGAGAAGGTTAA 1196 ||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| Sbjct 687 AACATATAAGAAGGG-A--AACCAAGCAACCTTCGTAAATGAAATCGTCCAGAAGGTTAA 743 Query 1197 GGCAATGCTTGACAACGTTTCCTCATCACACATTACGCCGCAACATCAAGTTTACATAAG 1256 ||||||||| || |||||||||||| |||||||| ||||||||||||||| |||||||| Sbjct 744 GGCAATGCTGGATAACGTTTCCTCACCACACATTGTGCCGCAACATCAAGTGTACATAAG 803 Query 1257 TTTTCGGAGTCGAGAGATCCGCAACAAGTTCTCCAGCCTTCTTAGAGCCGCGTTACGAAG 1316 ||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 804 TTTCCGGAGTCAAGAGATCCGCAACAAGTTCTCCAGCCTTCTTAGAGCCGCTTTACGAAG 863 Query 1317 GAGTGGGATCAACGTCCTTCTAGATGATGAAAATATCACTCGAATAGAGTCAAGAGACGA 1376 |||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||| Sbjct 864 GAGTGGGATCAACGTCTTTCTAGATGATGAAAATATTACTAGAATAGAGTCGAGAGACGA 923 Query 1377 AGTTGATAGACTTTTTTGTCGAGTTTCGAGAGTGAAGGATCGAACTAGT 1425 |||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 924 AGTTGATAGACTTTTTTGTCGAGTCTCGAGAGTCAAGGATCGAACTAGT 972 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55687938190 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5