BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11350.1
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489967 jgi|Araly1|489967|fgenesh2_kg.6__3101__AT4G11350.1 2396 0.0
Ahg492523 jgi|Araly1|492523|fgenesh2_kg.7__1956__AT4G23490.1 1131 0.0
> Ahg489967 jgi|Araly1|489967|fgenesh2_kg.6__3101__AT4G11350.1
Length=1595
Score = 2396 bits (1297), Expect = 0.0
Identities = 1500/1599 (94%), Gaps = 9/1599 (1%)
Strand=Plus/Plus
Query 1 TCACAAATTTGGATTTTATTG-TTCCACTGTGAATGAAAGGAAACCAAAAAGACTCATCG 59
||||||||||||| ||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1 TCACAAATTTGGA-TTTCTTGTTTCCGCTGTGAATGAAAGGAAACCAAAAAGACTCATCG 59
Query 60 GAGAAACCCATATGGGATCGGAGCTCATCGGGTATATCCATGACCCGACCCGGTCGATTA 119
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 60 GAGAAACCCATATGGGATCGGAGCTCTTCGGGTCTATCCATGACCCGACCCGGTCGATTA 119
Query 120 ATAATCTGGCTCATCCTCTTCATCTCCGTCACTTACATCATCTACACTCTCAAGATCGTC 179
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATGATCTGGCTCATGCTCTTCATCTCCGTCACTTACATCATCTACACTCTCAAGATCGTC 179
Query 180 TCCACTACACACCCTTGCGAAGATCTAACCTCCGAGTCAATTCTCCAACAAAGACCGGAG 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCCACTTCACACCCTTGCGAAGATCTAACCTCCGAGTCAATTCTCCAACAAAGACCGGAG 239
Query 240 AAAAAAGCGGTTACAGTAACGGTTAAGGCGGTTCCGGCGGAGCAAGAAGCAACGGATCTA 299
|||||||||||| | || ||||||||||||||||||| ||||| ||| |||| ||||||
Sbjct 240 AAAAAAGCGGTTGCGGTTGCGGTTAAGGCGGTTCCGGCTGAGCACGAATCAACCGATCTA 299
Query 300 AACCATGTGGTTTTCGGTATTGCTGCGTCGTCGAAGCTATGGAAACAAAGGAAAGAGTAT 359
|||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 300 AACCATGTCGTTTTCGGGATTGCAGCGTCGTCAAAGCTATGGAAACAAAGGAAAGAGTAT 359
Query 360 ATCAAGATTTGGTATAAGCCAAAGAAAATGAGAGGCTACGTGTGGTTAGACGAAGAGGTA 419
|||||||||||||| || || ||||| ||||||||||||||||||||||| ||||||||
Sbjct 360 ATCAAGATTTGGTACAAACCCAAGAAGATGAGAGGCTACGTGTGGTTAGATAAAGAGGTA 419
Query 420 AAGATAAAATCCGAAACCGGAGATCAAGAA-AGTCTCCCGTCGGTGAGAATCTCCGGTGA 478
|||||||||||||||||||||||||||||| | |||||| |||| ||||||||||||||
Sbjct 420 AAGATAAAATCCGAAACCGGAGATCAAGAACA-CCTCCCGCCGGTAAGAATCTCCGGTGA 478
Query 479 TACGTCGTCGTTTCCTTATACTAACAAACAAGGACACCGATCAGCGATTA-GGATCTCGA 537
||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||| |
Sbjct 479 TACGTCGTCGTTTCCTTATACTAACAAGCAAGGACACCGATCAGCGA-TACGGATCTCAA 537
Query 538 GGATTGTTTCGGAAACGTTGATGAGTCTTGATTCTGAGTCGAAGAAGAACGTGAGGTGGT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGATTGTTTCGGAAACGTTGATGAGTCTTGATTCTGAGTCGAAGAAGAACGTGAGGTGGT 597
Query 598 TCGTGATGGGTGATGATGATACGGTTTTTGTAACGGATAATTTAATTAGGGTTTTGAGGA 657
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 598 TCGTGATGGGTGATGATGATACGGTTTTTGTTACGGATAATCTAATTAGGGTTTTGAGGA 657
Query 658 AGTATGATCATGAACAGATGTATTATATAGGGAGCTTGTCGGAATCTCATTTGCAGAACA 717
|||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 658 AGTACGACCATGAACAGATGTATTATATAGGAAGCTTGTCGGAATCTCATTTGCAGAATA 717
Query 718 TTATT-TTCTCTTATGGAATGGCTTATGGTGGAGGAGGTTTTGCGATTAGTTATCCATTG 776
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 718 TT-TTCTTCTCTTATGGAATGGCTTATGGTGGAGGAGGTTTTGCGATTAGTTATCCTTTG 776
Query 777 GCTGTGGCTTTGAGTAAGATGCAAGATCAGTGTATTCAGAGGTATCCGGCTTTGTATGGT 836
|| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 777 GCAGTGGCTTTGAGTAAGATGCAAGATCGGTGTATTAAGAGGTATCCGGCTTTGTATGGT 836
Query 837 TCTGATGATCGGATGCAAGCTTGTATGGCTGAGCTTGGTGTTCCATTGACTAAAGAGATC 896
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 837 TCTGATGATCGGATGCAAGCTTGTATGGCTGAGCTTGGAGTTCCATTGACTAAGGAGATC 896
Query 897 GGTTTTCACCAATACGACGTTCATGGGAATCTCTTCGGCCTCCTAGCTGCCCATCCGATA 956
|||||||| |||||||||||||||||||| || ||||||||||||||||| |||||| ||
Sbjct 897 GGTTTTCATCAATACGACGTTCATGGGAACCTATTCGGCCTCCTAGCTGCTCATCCGGTA 956
Query 957 ACACCGTTTGTATCGATGCACCATCTTGATGTTGTGGAACCGATTTTTCCAAACATGACT 1016
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 957 ACACCGTTTGTATCAATGCACCATCTTGATGTGGTGGAACCGATTTTTCCAAACATGACC 1016
Query 1017 CGTGTTCGCGCTATCAAGAAACTAACCACACCGATGAAGATTGATTCGGCTGCGCTTCTC 1076
||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1017 CGTGTTCGCGCCATCAAGAAACTAACTACACCGATGAAGATTGATTCGGCTGGGCTTCTC 1076
Query 1077 CAACAATCAATATGCTATGACAAACACAAAAGCTGGACTATTTCAGTCTCGTGGGGATTT 1136
||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||
Sbjct 1077 CAACAATCAATATGCTATGACAAGCATAAAAGCTGGACGATTTCGGTCTCGTGGGGATTT 1136
Query 1137 GCGGTCCAGGTGTTCCGTGGATCATTCTCTCCCCGGGAAATGGAAATGCCATCTAGAACT 1196
||||| || |||||||||||||| ||||| || ||||||||||||||||| |||||||||
Sbjct 1137 GCGGTTCAAGTGTTCCGTGGATCCTTCTCACCACGGGAAATGGAAATGCCTTCTAGAACT 1196
Query 1197 TTCTTGAATTGGTACAAAAGAGCGGATTACACCGCCTACGCATTCAATACTAGGCCCGTG 1256
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1197 TTCTTGAATTGGTACAAAAGAGCTGATTACACCGCCTACGCATTCAATACTAGGCCCGTG 1256
Query 1257 AGTCGCAATCATTGCCAAAAACCGTTTGTTTTTCACATGTCGAGTGCAAAATTTGACCCG 1316
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct 1257 AGTCGCAATCATTGCCAAAAACCGTTTGTTTTTCACATGTCGAATGCGAAATTCGACCCG 1316
Query 1317 CAGTTGAACACGACGGTTAGCGAATACACGAGACATCGGGTTCCGCAACCGGCTTGTCGA 1376
||||||||||| |||||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 1317 CAGTTGAACACCACGGTTAGCGAATACACGAGGCATCGGGTTCCGCATCCAGCTTGTCGT 1376
Query 1377 TGGGATATGGCTAACCCAGAGGAGATCAACACTATAGTCGTCTACAAAAAACCCGATCCT 1436
||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1377 TGGGATATGGCTAACCCGGAGGAGATCAACACTATAGTTGTGTACAAAAAACCGGATCCT 1436
Query 1437 CACCTATGGAACAGATCACCTAGAAGAAACTGTTGCAGAGTATTACAAACAAAGAGGAAT 1496
|| ||||||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1437 CATCTATGGACCAGGTCACCGAGAAGAAATTGTTGCAGAGTATTACAAACAAAGAGGAAT 1496
Query 1497 AATACATTATGGATCAATGTTGGTGTATGTAGAGCAGGTGAAGTCACTGAAGTAAAGTAA 1556
|||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 1497 AATACATTATGGATTAATGTTGGTGTGTGTAGAGCAGGTGAAGTGACTGAAGTTAAGTAA 1556
Query 1557 TTTCTAT-TTTGTACTAAGAAAATTTTGAAAGAGAAAAA 1594
|||| | |||||| ||| |||| |||||||||||||||
Sbjct 1557 TTTCCACCTTTGTAATAAAAAAAGTTTGAAAGAGAAAAA 1595
> Ahg492523 jgi|Araly1|492523|fgenesh2_kg.7__1956__AT4G23490.1
Length=1996
Score = 1131 bits (612), Expect = 0.0
Identities = 1074/1292 (83%), Gaps = 52/1292 (4%)
Strand=Plus/Plus
Query 291 ACGGATCTAAACCATGTGGT-TTTCGGTATTGCTGCGTCGTCGAAGCTATGGAAACAAAG 349
|||||||| ||||| ||||| ||| || || ||||||||||| |||||||||||||| ||
Sbjct 596 ACGGATCTTAACCACGTGGTGTTT-GGGATCGCTGCGTCGTCTAAGCTATGGAAACAGAG 654
Query 350 GAAAGAGTATATCAAGATTTGGTATAAGCCAAAGAAAATGAGAGGCTACGTGTGGTTAGA 409
|||||||||||||||||| |||||||| |||||| | ||| | |||||||| ||||||||
Sbjct 655 GAAAGAGTATATCAAGATCTGGTATAAACCAAAGCACATGCGTGGCTACGTTTGGTTAGA 714
Query 410 CGAAGAGGTAAAGATAAAATCCG--AA--ACCG--GA-GATC-AAGA-AAG-T-CTCCCG 458
||||||| ||| || | || || | | || || | | || ||| | || |||
Sbjct 715 TAAAGAGGT-GAGA-AAGA-GCGTTAATGA-TGACGACGA-CGACGAGAAGCTGCTTCCG 769
Query 459 TCGGTGAGAATCTCCGG-TGATACGT-CGTCGTTTCCTTATACTAACAAACAAGGACACC 516
|||||| ||||||||| || || | | || |||||||||||||||||||||||||| |
Sbjct 770 CCGGTGAAAATCTCCGGCGGA-AC-TGCTTCTTTTCCTTATACTAACAAACAAGGACAAC 827
Query 517 GATCAGCGATTA-GGATCTCGAGGATTGTTTCGGAAACGTTGATGAGTCTTGATTCTGAG 575
| || ||| ||| |||||||||||||||| || ||||| | || || || | | |
Sbjct 828 GCTCGGCG-TTACGGATCTCGAGGATTGTGTCTGAAAC---GCTGCGT-TT-A----G-G 876
Query 576 TCGAAGAAGAACGTGAGGTGGTTCGTGATGGGTGATGATGATACGGTTTTTGTAACGGAT 635
|| |||||| ||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 877 TC--CGAAGAATGTGAGGTGGTTCGTGATGGGTGATGATGATACGGTGTTTGTTACTGAT 934
Query 636 AATTTAATTAGGGTTTTGAGGAAGTATGATCATGAACAGATGTATTATATAGGGAGCTTG 695
||||| |||||||| |||||||||||||| ||||| ||||||||||| || |||||||||
Sbjct 935 AATTTGATTAGGGTGTTGAGGAAGTATGACCATGAGCAGATGTATTACATTGGGAGCTTG 994
Query 696 TCGGAATCTCATTTGCAGAACATTA-TTTTCTCTTATGGAATGGCTTATGGTGGAGGAGG 754
|||||||||||||| ||||||| || ||||||| ||||| ||||||||||||||||| ||
Sbjct 995 TCGGAATCTCATTTACAGAACA-TATTTTTCTCGTATGGTATGGCTTATGGTGGAGGTGG 1053
Query 755 TTTTGCGATTAGTTATCCATTGGCTGTGGCTTTGAGTAAGATGCAAGATCAGTGTATTCA 814
||||| || ||||||||||||||| |||||||||||||||||||||| |||||| ||
Sbjct 1054 GTTTGCTATAAGTTATCCATTGGCTAAAGCTTTGAGTAAGATGCAAGATCGGTGTATACA 1113
Query 815 GAGGTATCCGGCTTTGTATGGTTCTGATGATCGGATGCAAGCTTGTATGGCTGAGCTTGG 874
||||||||| || |||||||| || |||||||| |||||||||||||||||||| |||||
Sbjct 1114 GAGGTATCCTGCATTGTATGGATCAGATGATCGCATGCAAGCTTGTATGGCTGAACTTGG 1173
Query 875 TGTTCCATTGACTAAAGAGA-TCGGTTTTCACCAATACGACGTTCATGGGAATCTCTTCG 933
||||||| | |||||||| | |||| |||||||| ||||||||| | ||||| ||||| |
Sbjct 1174 TGTTCCACTCACTAAAGA-ACTCGGATTTCACCAGTACGACGTTTACGGGAACCTCTTTG 1232
Query 934 GCCTCCTAGCTGCCCATCCGA-TAACACCGTTTGTATCGATGCACCATCTTGATGTTGTG 992
||||||| ||||| || || | |||||||||| || || |||||||| || || || |||
Sbjct 1233 GCCTCCTCGCTGCACA-CCCAGTAACACCGTTCGTCTCAATGCACCACCTCGACGTGGTG 1291
Query 993 GAACCGATTTTTCCAAACATGACTCGTGTTCGCGCTATCAAGAAACTAA-CCACACCGAT 1051
|||||||| || || || ||||| ||||| || ||| | ||||| |||| ||| ||| ||
Sbjct 1292 GAACCGATCTTCCCGAATATGACACGTGTCCGTGCTCTAAAGAAGCTAACCCA-ACCTAT 1350
Query 1052 GAAGATTGATTCGGCTGCGCTTCTCCAACAATCAATATGCTATGACAAACACAAAAGCTG 1111
|||| | || || || | ||||||||| || || |||||||| ||||| ||||| |||||
Sbjct 1351 GAAGCTCGACTCAGCCGGGCTTCTCCAGCAGTCGATATGCTACGACAAGCACAAGAGCTG 1410
Query 1112 GACTATTTCAGTCTCGTGGGGATTTGCGGTCCAGGTGTTCCGTGG-ATCATTCTCTCCCC 1170
||| || || ||||| ||||| | ||||| || | ||||| || || ||||||||||
Sbjct 1411 GACAATCTCCGTCTCCTGGGGCTACGCGGTACAAATATTCCGCGGAAT-TTTCTCTCCCC 1469
Query 1171 GGGAAATGGAAATGCCATCTAGAA-CTTTCTTGAATTGGTACAAAAGAGCGGATTACACC 1229
|||||||||||||||| ||||||| |||| ||||||||||||||| | |||||||||||
Sbjct 1470 GGGAAATGGAAATGCCTTCTAGAACCTTT-TTGAATTGGTACAAACGGGCGGATTACACT 1528
Query 1230 GCCTACGCATTCAATACTAGGCCCGTGAGTCGCAATCATTGCCAAAAACCGTTTGT-TTT 1288
|| ||||| ||||| || ||||| || || || || | ||||||||||||||||| |||
Sbjct 1529 GCTTACGCTTTCAACACCAGGCCGGTTAGCCGTAACCCGTGCCAAAAACCGTTTGTGTTT 1588
Query 1289 TCACATGTCGAGTGCAAAATTTGACCCGCAGTTGAACACGACGGTTAGCGAATACACGAG 1348
| | |||||||| | ||||| |||| |||| |||||||||||||||||||||||||||
Sbjct 1589 T-ATATGTCGAGCACGAAATTCGACCAGCAGCTGAACACGACGGTTAGCGAATACACGAT 1647
Query 1349 ACATCGGGTTCCGCAACCGGCTTGTCGATGGGATATGGCTAACCCAGAGGAGATCAACAC 1408
||| || ||| |||| || |||| |||||| | ||| | ||||||| ||||| |||||
Sbjct 1648 ACACCGTGTTTCGCATCCTTCTTGCCGATGGAAGATGACAAACCCAGCTGAGATTAACAC 1707
Query 1409 TATAGTCGTCTACAAAAAACCCGATCCTCACCTAT-GGAACAGATCACCTAGAAGAAACT 1467
|| ||||| ||||| |||||||| ||||| |||| |||| || |||||||| || || |
Sbjct 1708 CATCGTCGTTTACAAGAAACCCGACCCTCATCTATGGGAA-AGGTCACCTAGGAGGAATT 1766
Query 1468 GTTGCAGAGTATTACAAACAAAGAGGAATAATACATTATGGATCAATGTTGGTGTATGTA 1527
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1767 GTTGCAGAGTATTACAAACAAAGAGGAATAATACGTTATGGATCAATGTTGGTGTATGTA 1826
Query 1528 GAGCAGGTGAAGTCACTGAAGTAAAGTAATTT 1559
||||||||||||||||||| || |||||||||
Sbjct 1827 GAGCAGGTGAAGTCACTGAGGTTAAGTAATTT 1858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61477655430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5