BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11360.1
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942990 jgi|Araly1|942990|scaffold_603534.1 675 0.0
Ahg942992 jgi|Araly1|942992|scaffold_603536.1 595 1e-169
> Ahg942990 jgi|Araly1|942990|scaffold_603534.1
Length=516
Score = 675 bits (365), Expect = 0.0
Identities = 460/505 (91%), Gaps = 9/505 (2%)
Strand=Plus/Plus
Query 44 ctcA-CACTCATGGGTCTTCCAACAGATTTCAAAGAGCTTCAGATTCCAGGTTACGTACT 102
|||| || ||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 14 CTCATCA-TCATGGGTCTTCCAACAGATTTCAAGGAGCTTCAGATTCCAGAATACGTACT 72
Query 103 AAAAACACTTTACGTCATCGGTTTCTTTAGAGACATGGTCGATGCTCTTTGTCCTTACAT 162
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 73 TAAAACACTTTACGTCATCGGTTTCTTCAGAGACATGGTCGATGCTCTTTGTCCATACAT 132
Query 163 CGGTCTACCAAGTTTTCTTGACCACAACGAGACCTCTCGATCCGACCCGACCCGA-CTCG 221
||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| | | ||
Sbjct 133 CGGTCTACCTAGTTTTCTTGACCACCACGAGACCTTTCGATCCGACCCGACCC-ATCACG 191
Query 222 CTCTCTCCACGTCAGCAACTCTTGCCAACGAGTTAATCCCGGTGGTTCGTTTCTCCGATC 281
|||||||||||||||| | ||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 192 CTCTCTCCACGTCAGCGAGTCTTGCCAACGAGTTAATCCCAGTGGTTCGGTTCTCGGATC 251
Query 282 TTTTAACCGATCCGGAAGATTGCTGCACGGTTTGCTTATCCGATTTTGTA-TCCGACGAT 340
| || |||||||||||||||||||| |||||||| ||||||||||||| | |||||||||
Sbjct 252 TCTTGACCGATCCGGAAGATTGCTGTACGGTTTGTTTATCCGATTTTG-ACTCCGACGAT 310
Query 341 AAGATTAGACAGCTGCCGAAGTGTGGACACGTGTTTCATCATCGTTGTTTAGACCGTTGG 400
| |||||||||||| || || |||||||||||||| || |||||||| ||||| ||||||
Sbjct 311 ATGATTAGACAGCTACCAAACTGTGGACACGTGTTCCACCATCGTTGCTTAGATCGTTGG 370
Query 401 ATCGTTGACTGTAATAAGATAACGTGCCCGATTTGTCGGAACCGGTTCTTACCGGAGGAA 460
||||||||||| || ||||| || || ||||||||||||||||||||||||||||| |||
Sbjct 371 ATCGTTGACTGCAACAAGATGACTTGTCCGATTTGTCGGAACCGGTTCTTACCGGAAGAA 430
Query 461 AAGTCCACGCCGTTTGATTGGGGTACTTCAGATTGGTTTAGAGATGAAGTGGAGAGTACC 520
||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 431 AAGCCCACGCCGTTTGATTGGGGTTCTTCAGATTGGTTCAGAGATGAAGTGGAGAGTACC 490
Query 521 AACTAATAATGATGGttttactttt 545
||||||| |||||||||||||||
Sbjct 491 AACTAAT---GATGGTTTTACTTTT 512
> Ahg942992 jgi|Araly1|942992|scaffold_603536.1
Length=520
Score = 595 bits (322), Expect = 1e-169
Identities = 450/509 (88%), Gaps = 20/509 (4%)
Strand=Plus/Plus
Query 31 tctctatctttctctcACACTCATGGGTCTTCCAA-CAGATTTCA--AA-GAGCTTCAGA 86
||||||||||| ||| |||||||||||||| ||| |||||||| || ||||||||||
Sbjct 1 TCTCTATCTTTATCT--CACTCATGGGTCTT-CAAGAAGATTTCATCAAGGAGCTTCAGA 57
Query 87 TTCCAGGTTACGTACTAAAAACACTTTACGTCATCGGTTTCTTTAGAGACATGGTCGATG 146
||||||| ||| || |||| | |||||||||||||||||||||||||||||| |||||
Sbjct 58 TTCCAGGGTACATAGTAAAGATACTTTACGTCATCGGTTTCTTTAGAGACATCGTCGACA 117
Query 147 CTCTTTGTCCTTACATCGGTCTACCAAGTTTTCTTGACCACAACGAGACCTCTCGATCC- 205
|||||||||||||||| |||||||| ||||||||||||||| |||||||||||||| ||
Sbjct 118 CTCTTTGTCCTTACATTGGTCTACCTAGTTTTCTTGACCACCACGAGACCTCTCGA-CCT 176
Query 206 GACCCGACCCGACTCGCTCTCTCCACGTCAGCAACTCTTGCCAACGAGTTAATCCCGGTG 265
|||||| |||||| || ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 177 GACCCGGCCCGACACGGTCTCTCCACGTCAGCGAGTCTTGCCAACGAGTTAATCCCGGTG 236
Query 266 GTTCGTTTCTCCGATCTTTTAACCGATCCGGAAGATTGCTGCACGGTTTGCTTATCCGAT 325
||||| ||||||||||| || |||||||| ||||||||||||||| |||| |||||||||
Sbjct 237 GTTCGGTTCTCCGATCTCTTGACCGATCCAGAAGATTGCTGCACGATTTGTTTATCCGAT 296
Query 326 TTTGTA-TCCGACGATAAGATTAGACAGCTGCCGAAGTGTGGACACGTGTTTCATCATCG 384
|||| | ||| ||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 297 TTTG-ACTCCAACGATAAGATTAGACAGCTACCGAAGTGTGGACACGTGTTTCACCAACG 355
Query 385 TTGTTTAGACCGTTGGATCGTTGACTGT-AATAAGAT-AACGTGCCCGATTTGTCGGAAC 442
|||||||||||||||||||||||||| | || ||||| || ||| || ||||||||||||
Sbjct 356 TTGTTTAGACCGTTGGATCGTTGACT-TCAACAAGATGAA-GTGTCCAATTTGTCGGAAC 413
Query 443 CGGTTCTTACCGGAGGAAAAGTCCACGCCGTTTGATTGGGGTACT--T-CAGATTGGTTT 499
|||||||||||||| ||||||| ||||| || |||||||||| || | |||||||||||
Sbjct 414 CGGTTCTTACCGGAAGAAAAGTACACGCAGTGTGATTGGGGTTCTGGTTCAGATTGGTTT 473
Query 500 AGA-GATGAAGTGGAGAGTACCAACTAAT 527
| | | ||||||||| ||| |||||||||
Sbjct 474 A-ATGGTGAAGTGGAAAGTTCCAACTAAT 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27486623157
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5