BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G11370.1

Length=713
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942992 jgi|Araly1|942992|scaffold_603536.1                        628    1e-179


> Ahg942992 jgi|Araly1|942992|scaffold_603536.1
Length=520

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 452/507 (89%), Gaps = 4/507 (1%)
 Strand=Plus/Plus

Query  84   TCTCTATCTTTCTCTAAATCATGGGTCTTCCTGAAGATTTCATCACCGAGCTTCAGATTC  143
            ||||||||||| ||| | ||||||||||||  |||||||||||||  |||||||||||||
Sbjct  1    TCTCTATCTTTATCTCACTCATGGGTCTTCAAGAAGATTTCATCAAGGAGCTTCAGATTC  60

Query  144  CAAGTTACATATTAAAGATACTTTACGTCATCGGTTTCTTTAGAGACATCGTCGATGCTC  203
            || | |||||| |||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct  61   CAGGGTACATAGTAAAGATACTTTACGTCATCGGTTTCTTTAGAGACATCGTCGACACTC  120

Query  204  TTTGTCCTTACATTGGTCTACCTCGTTTTCTAGACCACAACGAGACCTCT-GCACCCGAT  262
            ||||||||||||||||||||||| ||||||| |||||| ||||||||||| | ||| || 
Sbjct  121  TTTGTCCTTACATTGGTCTACCTAGTTTTCTTGACCACCACGAGACCTCTCG-ACCTGAC  179

Query  263  CTGACCCGACACGCTCTCTCTACGTCAGCGAGTCTTGCTAACGAGTTGATCCCGGTGGTT  322
            | | ||||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct  180  CCGGCCCGACACGGTCTCTCCACGTCAGCGAGTCTTGCCAACGAGTTAATCCCGGTGGTT  239

Query  323  CGGTTCTCGGATCT-TCCGACCGATCCGGAAGATTGTTGTACGGTTTGTTTGTCAGATTT  381
            |||||||| ||||| |  ||||||||| |||||||| || ||| ||||||| || |||||
Sbjct  240  CGGTTCTCCGATCTCTT-GACCGATCCAGAAGATTGCTGCACGATTTGTTTATCCGATTT  298

Query  382  TGAGTCCGACGATAAGGTTAGGCAGCTACCCAAGTGTGGACACGTGTTTCATCATTATTG  441
            ||| ||| |||||||| |||| |||||||| |||||||||||||||||||| ||   |||
Sbjct  299  TGACTCCAACGATAAGATTAGACAGCTACCGAAGTGTGGACACGTGTTTCACCAACGTTG  358

Query  442  TTTAGACCGTTGGATCGTTGACTACAACAAGATGAAATGTCCGGTTTGTCGGCACCGGTT  501
            ||||||||||||||||||||||| |||||||||||| |||||  |||||||| |||||||
Sbjct  359  TTTAGACCGTTGGATCGTTGACTTCAACAAGATGAAGTGTCCAATTTGTCGGAACCGGTT  418

Query  502  CTTACCGAAAGAAAAGTACACGCAATCTGATTGGGGTTCTGGTTCAGATTGGTTTAGTGA  561
            ||||||| |||||||||||||||| | ||||||||||||||||||||||||||||| || 
Sbjct  419  CTTACCGGAAGAAAAGTACACGCAGTGTGATTGGGGTTCTGGTTCAGATTGGTTTAATGG  478

Query  562  TGAAGTGGAAAGTACCAACTAATTGGT  588
            ||||||||||||| |||||||||||||
Sbjct  479  TGAAGTGGAAAGTTCCAACTAATTGGT  505



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26228566896


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5