BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11380.2
Length=3002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489969 jgi|Araly1|489969|fgenesh2_kg.6__3103__AT4G11380.1 4279 0.0
Ahg492527 jgi|Araly1|492527|fgenesh2_kg.7__1960__AT4G23460.1 2961 0.0
> Ahg489969 jgi|Araly1|489969|fgenesh2_kg.6__3103__AT4G11380.1
Length=3190
Score = 4279 bits (2317), Expect = 0.0
Identities = 2557/2673 (96%), Gaps = 15/2673 (1%)
Strand=Plus/Plus
Query 272 GGATAAGAGAAAAGATGCAGTTAAGAAGGTTATTGCGGCGATGACTGTTGGAAAGGATGT 331
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 126 GGATAAGAGAAAAGATGCAGTTAAGAAGGTTATTGCGGCGATGACTGTGGGGAAGGATGT 185
Query 332 TTCATCACTTTTCACTGATGTAGTCAATTGTATGCAAACGGAAAATTTGGAGTTGAAGAA 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TTCATCACTTTTCACTGATGTAGTCAATTGTATGCAAACGGAAAATTTGGAGTTGAAGAA 245
Query 392 GCTTGTTTACTTGTATCTCATAAATTATGCGAAAAGCCAGCCAGATCTTGCTATTCTTGC 451
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 246 GCTTGTTTACTTGTATCTCATAAATTATGCGAAAAGTCAGCCAGATCTTGCTATTCTTGC 305
Query 452 AGTAAATACCTTTGTAAAGGATTCACAGGATCCAAATCCGCTGATTCGTGCTTTGGCTGT 511
||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 306 AGTAAATACTTTTGTAAAGGATTCACAGGATCCAAATCCACTGATTCGAGCTTTGGCTGT 365
Query 512 GCGGACAATGGGCTGCATTCGTGTTGATAAAATCACAGAATATCTATGTGATCCTCTTCA 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GCGGACAATGGGCTGCATTCGTGTTGATAAAATCACAGAATATCTATGTGATCCTCTTCA 425
Query 572 AAAGTGCCTAAAGGATGATGACCCATATGTCAGGAAGACTGCGGCTATTTGCGTCGCTAA 631
||||||||||||||||||||| ||||||||| ||||||| || ||||||||||| |||||
Sbjct 426 AAAGTGCCTAAAGGATGATGATCCATATGTCCGGAAGACAGCAGCTATTTGCGTTGCTAA 485
Query 632 GCTTTTCGACATAAATGCTGAATTAGTTGAGGACAGAGGTTTCCTTGAAGCCTTGAAGGA 691
|||||| ||||||||||||||||| || ||||| || |||||||||||||||||||| ||
Sbjct 486 GCTTTTTGACATAAATGCTGAATTGGTGGAGGATAGGGGTTTCCTTGAAGCCTTGAAAGA 545
Query 692 TTTGATATCAGATAACAATCCAATGGTTGTTGCCAATGCTGTAGCAGCCCTTGCGGAGAT 751
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 546 TTTGATATCAGACAACAATCCGATGGTTGTTGCCAATGCTGTAGCAGCCCTTGCAGAGAT 605
Query 752 TCAAGAGAACAGTAGTAGCCCCATCTTTGAGATCAATAGTACCACTCTTACAAAGCTCCT 811
||||||||| |||| ||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 606 TCAAGAGAATAGTACTAGCCCCATATTTGAGATCAATAGTACAACCCTTACAAAGCTCCT 665
Query 812 TACTGCTCTAAATGAATGCACTGAGTGGGGTCAAGTTTTTATACTAGATGCTTTATCGAA 871
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 666 TACCGCTCTAAATGAATGCACTGAGTGGGGTCAAGTTTTTATATTAGATGCTTTATCGAG 725
Query 872 GTATAAAGCAGCTGATCCCCGTGAGGCTGAAAATATTGTTGAGAGAGTAACACCAAGGTT 931
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 726 GTATAAAGCAGCTGATCCCCGTGAAGCTGAAAATATTGTTGAGAGAGTCACACCAAGGTT 785
Query 932 GCAACATGCCAACTGCGCTGTTGTTCTTTCAGCTGTTAAGATGATCCTTCAACAAATGGA 991
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 786 ACAACATGCCAACTGCGCTGTTGTGCTTTCAGCTGTTAAGATGATCCTTCAACAAATGGA 845
Query 992 ACTTATTACTAGTACAGACGTGATTAGAAATCTTTGTAAGAAGATGGCTCCACCCCTTGT 1051
|||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 846 ACTTATCACTAGTACAGACGTGATTCGAAATCTTTGCAAGAAGATGGCTCCACCCCTTGT 905
Query 1052 TACATTGCTTTCTGCCGAACCTGAGATACAATATGTTGCACTTCGTAACATTAATCTTAT 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 TACATTGCTTTCTGCCGAACCTGAGATACAATATGTTGCACTTCGTAACATTAATCTTAT 965
Query 1112 TGTGCAAAAACGACCCACTATCCTTGCCCATGAAATTAAGGTTTTCTTCTGCAAGTATAA 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TGTGCAAAAACGACCCACTATCCTTGCCCATGAAATTAAGGTTTTCTTCTGCAAGTATAA 1025
Query 1172 CGACCCAATTTATGTTAAGATGGAGAAGTTGGAGATTATGATTAAACTTGCCTCTGACAG 1231
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 CGACCCGATTTATGTTAAGATGGAGAAGTTGGAGATTATGATTAAACTTGCCTCTGACAG 1085
Query 1232 AAACATAGACCAGGTTCTTCTGGAATTCAAAGAGTATGCCACAGAAGTAGACGTTGATTT 1291
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1086 AAACATAGACCAGGTTCTTCTTGAATTCAAAGAGTATGCCACGGAAGTAGACGTTGATTT 1145
Query 1292 TGTTAGAAAGGCTGTTCGTGCGATAGGCCGATGTGCTATCAAACTAGAGAGAGCAGCTGA 1351
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1146 TGTTAGAAAGGCTGTTCGTGCCATAGGCCGATGTGCTATCAAACTAGAGAGAGCAGCTGA 1205
Query 1352 ACGGTGCATCAGTGTTTTGCTCGAGTTGATCAAGATTAAAGTGAATTATGTTGTCCAGGA 1411
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1206 ACGGTGCATCAGTGTTTTGCTCGAGTTGATCAAGATCAAAGTAAATTATGTTGTCCAGGA 1265
Query 1412 GGCCATTATTGTCATCAAAGATATCTTCAGAAGATATCCAAACACGTATGAGTCCATAAT 1471
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 GGCCATTATTGTCATAAAAGATATCTTCAGAAGATATCCAAACACGTATGAGTCCATAAT 1325
Query 1472 TGCAACACTCTGTGAGAGTTTAGACACTTTGGATGAACCAGAAGCTAAGGCATCTATGAT 1531
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1326 TGCAACACTCTGTGAGAGTTTAGACACTTTGGATGAACCAGAAGCCAAGGCATCTATGAT 1385
Query 1532 ATGGATCATTGGTGAATATGCTGAAAGAATTGACAATGCCGATGAGCTTCTTGAAAGCTT 1591
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1386 ATGGATCATTGGTGAATATGCTGAAAGAATTGACAATGCGGATGAGCTTCTTGAAAGCTT 1445
Query 1592 TCTGGAGAATTTTCCTGAGGAACCAGCACAGGTCCAGTTGCAGCTCCTAACTGCTACTGT 1651
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1446 CCTGGAGAGTTTTCCTGAGGAACCAGCACAGGTCCAGTTGCAGCTTCTAACTGCTACTGT 1505
Query 1652 TAAGCTATTCCTGAAGAAGCCAACTGAAGGCCCTCAACAAATGATTCAGGTTGTCTTGAA 1711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 TAAGCTATTCCTGAAGAAGCCAACTGAAGGCCCTCAACAAATGATTCAGGTTGTCTTGAA 1565
Query 1712 TAATGCTACTGTGGAGACGGATAATCCTGATCTCAGAGATCGTGCATACATATACTGGCG 1771
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 TAACGCTACTGTGGAGACGGATAATCCTGATCTCAGAGATCGTGCATACATATACTGGCG 1625
Query 1772 TCTTCTATCCACTGATCCTGAGGCTGCCAAGGATGTTGTCTTAGCTGAAAAGCCCGTGAT 1831
|||||||||||||||||| ||||| || || |||||||| ||||||||||||||||||||
Sbjct 1626 TCTTCTATCCACTGATCCGGAGGCCGCTAAAGATGTTGTTTTAGCTGAAAAGCCCGTGAT 1685
Query 1832 TTCTGACGACTCAAACCAGCTAGACCCATCACTTCTTGATGAGCTTCTTACAAATATTTC 1891
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1686 TACTGACGACTCAAACCAGCTAGACCCATCACTTCTTGATGAGCTGCTTACAAATATTTC 1745
Query 1892 GACCTTGTCCTCTGTGTACCACAAACCCCCAGAGGCTTTTGTTACCCGCTTGAAAACGAC 1951
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1746 AACCTTGTCCTCTGTGTACCACAAACCCCCAGAAGCTTTTGTTACCCGCTTGAAAACCAC 1805
Query 1952 AGTTCAGAAAACAGAAGACGAGGACTTTGCGGAAGGAAGCGAAGCAGGATACTCATCTAG 2011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 AGTTCAGAAAACAGAAGACGAGGACTTTGCGGAAGGAAGCGAAGCAGGATACTCATCTAG 1865
Query 2012 TAATCCGGTTGATAGTGCAGCTTC---TCC-TCCA-----GGTAATATCCCACAGCCTTC 2062
|||||||||||||||||||||||| ||| |||| |||||||||||||||||| |
Sbjct 1866 TAATCCGGTTGATAGTGCAGCTTCCCCTCCATCCACCACAGGTAATATCCCACAGCCTGC 1925
Query 2063 CGGAAGACAACCAGCACCAGCGGTCCCAGCTCCTGTACCTGATCTGCTAGGTGACCTGAT 2122
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1926 CGGAAGACAACCAGCAGCAACGGTCCCAGCTCCTGTACCTGATCTGCTAGGTGACCTGAT 1985
Query 2123 GGGATTGGATAATGCCGCTATTGTCCCGGTTGATGATCCCATAACTCAATCTGGTCCTCC 2182
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1986 GGGATTGGATAATGCCGCTATTGTCCCGGTTGATGAACCCATAACTCCATCTGGTCCTCC 2045
Query 2183 TCTGCCCGTTGTCGTCCCAGCTTCAAGTGGTCAAGGTCTGCAGATAAGCGCTCAATTATC 2242
| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2046 TTTGCCGGTTGTCGTGCCAGCTTCAAGTGGTCAAGGTCTGCAGATAAGCGCTCAATTATC 2105
Query 2243 CCGAAAAGATGGACAAGTATTTTACAGTATGCTCTTCGAGAACAACTCGCAGTCGGTTCT 2302
||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| ||
Sbjct 2106 CCGAAAAGATGGACAAGTATTCTACAGTATGCTCTTCGAGAATAACTCGCAGACGGTACT 2165
Query 2303 TGATGGTTTCATGATTCAGTTCAACAAAAACACATTCGGCCTTGCAGCTGCTGGATCTCT 2362
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 2166 TGATGGTTTCATGATTCAGTTCAACAAGAACACATTCGGCCTTGCAGCTGCTGGACCTCT 2225
Query 2363 TCAGATTCCGCCTTTGCATCCCGCAACATCCGCCAGGACAATGCTACCTATGGTCTTGTT 2422
|||||||||||||||||| || | ||| || |||||||||||||||||||||||||||||
Sbjct 2226 TCAGATTCCGCCTTTGCAACCTGGAACGTCTGCCAGGACAATGCTACCTATGGTCTTGTT 2285
Query 2423 CCAAAACATGTCTGCTGGGCCTCCAAGCTCGCTCTTACAAGTCGCTGTCAAAAACAACCA 2482
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2286 CCAGAACATGTCTGCTGGGCCTCCAAGCTCGCTATTACAAGTCGCTGTCAAAAACAATCA 2345
Query 2483 GCAGCCCGTGTGGTACTTCACCGATAAGATTATACTTCATGCTCTTTTCGGTGAAGACGG 2542
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2346 GCAGCCTGTTTGGTACTTCACAGATAAGATTATACTTCATGCTCTTTTCGGTGAAGATGG 2405
Query 2543 TAGAATGGAACGTGGAACCTTCCTTGAGACATGGAGGTCGTTACCGGACTCAAATGAAGT 2602
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2406 TAGAATGGAACGTGGAACCTTCCTTGAGACATGGAGGTCGTTACCGGACTCGAATGAAGT 2465
Query 2603 CCTGAAAGAATTCCCCGGGATCACCATCACGAGCGTCGAATCAACTATCGAATTGCTCAC 2662
|| ||||||||||||||||||||||||||| ||||| ||||| ||||| || ||||||||
Sbjct 2466 CCAGAAAGAATTCCCCGGGATCACCATCACAAGCGTTGAATCGACTATTGATTTGCTCAC 2525
Query 2663 AGCATTCAACATGTTCTTTATAGCAAAGCGCAAGAACGGGAACCAAGACGTGATCTACTT 2722
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 2526 AGCATTCAACATGTTCTTCATAGCAAAACGCAAGAACGGGAACCAAGACGTGATCTACTT 2585
Query 2723 ATCAGCCAAAGATCCACGAGATGTACCGTTTTTGATCGAGCTCACTGCAATGGTGGGCCA 2782
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2586 ATCAGCAAAAGATCCACGAGATGTTCCGTTTTTGATCGAGCTCACTGCAATGGTGGGCCA 2645
Query 2783 ACCAGGTCTCAAATGCGCAGTGAAAACTCCCACTCCCGAGATTGCGCCTCTCTTCTTCGA 2842
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 2646 ACCAGGTCTCAAATGCGCAGTGAAAACTCCCACTCCCGAGATTGCACCTGTCTTCTTCGA 2705
Query 2843 AGCTTTGGAGCTTCTCTTCAAGGCTTGATGATTAACGTTGTTATCAAAAGGCTAATAAGA 2902
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||
Sbjct 2706 AGCTTTGGAGCTTCTCTTCAAGGCTTGATGATTAACATTGTTGTCAAAAGGCTAA-AA-- 2762
Query 2903 CCAAGACCTGAAAGGTTTCAGAGATTCTTTCTT 2935
||| |||||| ||||||||||| || ||||||
Sbjct 2763 CCA-GACCTGCAAGGTTTCAGAT-TT-TTTCTT 2792
Score = 159 bits (86), Expect = 8e-38
Identities = 122/137 (89%), Gaps = 11/137 (8%)
Strand=Plus/Plus
Query 70 AAAATCTCAGAGAAGAAACATCGTCGGGTCAGGTCGAAGAAAGGAGAGAAATGAGTGGTC 129
|||||||||||||||||| ||||| |||||||| | |||||||||||||||
Sbjct 1 AAAATCTCAGAGAAGAAAAATCGT--TGTCAGGTC--------G-GAGAAATGAGTGGTC 49
Query 130 ACGATTCGAAATACTTCTCCACGACGAAGAAGGGAGAGATCCCTGAGCTCAAGGAAGAGC 189
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 50 ACGATTCGAAATACTTCTCGACAACGAAGAAGGGAGAGATCCCTGAGCTCAAGGAAGAGC 109
Query 190 TTAATTCCCAGTATAAG 206
|||||||||||||||||
Sbjct 110 TTAATTCCCAGTATAAG 126
Score = 86.1 bits (46), Expect = 1e-15
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 2954 TTTTTTCTTCTTCTGAGTTTAGTGTATGTAATAAATCCCATGTTTGTGT 3002
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2784 TTTTTTCTTCGTCTGAGTTTAGTGTATGTAATAAATCCCATGTTTGTGT 2832
> Ahg492527 jgi|Araly1|492527|fgenesh2_kg.7__1960__AT4G23460.1
Length=2899
Score = 2961 bits (1603), Expect = 0.0
Identities = 2291/2624 (87%), Gaps = 44/2624 (2%)
Strand=Plus/Plus
Query 272 GGATAAGAGAAAAGATGCAGTTAAGAAGGTTATTGCGGCGATGACTGTTGGAAAGGATGT 331
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 123 GGATAAGAGGAAAGATGCTGTTAAGAAGGTTATTGCGGCAATGACTGTTGGAAAGGATGT 182
Query 332 TTCATCACTTTTCACTGATGTAGTCAATTGTATGCAAACGGAAAATTTGGAGTTGAAGAA 391
|||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct 183 TTCATCACTTTTCACTGATGTAGTCAATTGCATGCAAACGGAGAATCTGGAGTTGAAGAA 242
Query 392 GCTTGTTTACTTGTATCTCATAAATTATGCGAAAAGCCAGCCAGATCTTGCTATTCTTGC 451
||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||| || ||
Sbjct 243 GCTTGTTTATTTGTATCTGATAAACTATGCCAAAAGCCAGCCAGATCTTGCTATCCTCGC 302
Query 452 AGTAAATACCTTTGTAAAGGATTCACAGGATCCAAATCCGCTGATTCGTGCTTTGGCTGT 511
||| ||||| ||||||||||||||||| || |||||||| |||| || |||||||||||
Sbjct 303 AGTTAATACTTTTGTAAAGGATTCACAAGACCCAAATCCATTGATCCGGGCTTTGGCTGT 362
Query 512 GCGGACAATGGGCTGCATTCGTGTTGATAAAATCACAGAATATCTATGTGATCCTCTTCA 571
||| ||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 363 GCGAACAATGGGCTGTATTCGTGTTGACAAGATCACAGAATATCTGTGTGATCCTCTTCA 422
Query 572 -AAAGTGCCTAAAGGATGATGACCCATATGTCAGGAAGACTGCGGCTATTTGCGTCGCTA 630
||| ||||||||||||||||||||||||||| | ||||| || |||||||| || ||||
Sbjct 423 GAAA-TGCCTAAAGGATGATGACCCATATGTCCGCAAGACAGCAGCTATTTGTGTTGCTA 481
Query 631 AGCT-TTTCGACATAAATGCTGAATTAGTTGAGGACAGAGGTTTCCTTGAAGCCTTGAAG 689
| | ||| |||||||||||||||||||||||||| || || |||||||||||||| |||
Sbjct 482 AATTGTTT-GACATAAATGCTGAATTAGTTGAGGATAGGGGGTTCCTTGAAGCCTTAAAG 540
Query 690 GATTTGATATCAGATAACAATCCAATGGTTGTTGCCAATGCTGTAGCAGCCCTTGCGGAG 749
||||| |||||||| || ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 541 GATTTAATATCAGACAATAATCCAATGGTTGTTGCAAATGCTGTAGCAGCCCTTGCAGAG 600
Query 750 ATTCAAGAGAACAGTAGTAGCCCCATCTTTGAGATCAATAGTACCACTCTTACAAAGCTC 809
|| |||||||| |||| ||| ||||| ||||| |||||||||||||| || |||||||||
Sbjct 601 ATACAAGAGAATAGTACTAGTCCCATATTTGAAATCAATAGTACCACCCTCACAAAGCTC 660
Query 810 CTTACTGCTCTAAATGAATGCACTGAGTGGGGTCAAGTTTTTATACTAGATGCTTTATCG 869
||||| ||| | |||||||| ||||| ||||||||||| |||||| |||||||||| |||
Sbjct 661 CTTACAGCTTTGAATGAATGTACTGAATGGGGTCAAGTATTTATATTAGATGCTTTGTCG 720
Query 870 AAGTATAAAGCAGCTGATCCCCGTGAGGCTGAAAATATTGTTGAGAGAGTAACACCAAGG 929
| |||||| ||||||||||| ||||| ||||| ||||||||||||||||| || ||||||
Sbjct 721 AGGTATAAGGCAGCTGATCCTCGTGAAGCTGAGAATATTGTTGAGAGAGTCACTCCAAGG 780
Query 930 TTGCAACATGCCAACTGCGCTGTTGTTCTTTCAGCTGTTAAGATGATCCTTCAACAAATG 989
||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||
Sbjct 781 TTGCAACATGCCAACTGTGCTGTTGTGCTTTCAGCTGTTAAGATGATCCTTCAGCAGATG 840
Query 990 GAACTTATTACTAGTACAGACGTGATTAGAAATCTTTGTAAGAAGATGGCTCCACCCCTT 1049
|| ||||||||||||||||| |||||| |||||||||| |||||||||||||| |||||
Sbjct 841 GAGCTTATTACTAGTACAGATGTGATTCGAAATCTTTGCAAGAAGATGGCTCCTCCCCTA 900
Query 1050 GTTACATTGCTTTCTGCCGAACCTGAGATACAATATGTTGCACTTCGTAACATTAATCTT 1109
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 901 GTTACATTGCTTTCTGCAGAACCTGAGATACAGTATGTTGCACTTCGTAACATTAACCTT 960
Query 1110 ATTGTGCAAAA-ACGACCCACTATCCTTGCCCATGAAATTAAGGTTTTCTTCTGCAAGTA 1168
||||| ||||| | |||| ||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 961 ATTGTCCAAAAGA-GACCAACTATTCTTGCCCATGAAATCAAGGTGTTCTTCTGCAAGTA 1019
Query 1169 TAACGACCCAATTTATGTTAAGATGGAGAAGTTGGAGATTATGATTAAACTTGCCTCTGA 1228
||| || || |||||||| |||||||||||||| || |||||||| |||||||| |||||
Sbjct 1020 TAATGATCCGATTTATGTCAAGATGGAGAAGTTAGAAATTATGATAAAACTTGCTTCTGA 1079
Query 1229 CAGAAACATAGACCAGGTTCTTCTGGAATTCAAAGAGTATGCCACAGAAGTAGACGTTGA 1288
||||||||||||||||||||||||||| |||||||| |||||||| |||||||| || ||
Sbjct 1080 CAGAAACATAGACCAGGTTCTTCTGGAGTTCAAAGAATATGCCACGGAAGTAGATGTAGA 1139
Query 1289 TTTTGTTAGAAAGGCTGTTCGTGCGATAGGCCGATGTGCTATCAAACTAGAGAGAGCAGC 1348
||||||| | |||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 1140 TTTTGTTCGGAAGGCTGTTCGTGCAATAGGCCGATGTGCCATCAAACTAGAAAGAGCAGC 1199
Query 1349 TGAACGGTGCATCAGTGTTTTGCTCGAGTTGATCAAGATTAAAGTGAATTATGTTGTCCA 1408
|||||| |||||||||||||| || ||| |||||||||| ||||| || |||||||| ||
Sbjct 1200 TGAACGTTGCATCAGTGTTTTACTTGAGCTGATCAAGATCAAAGTAAACTATGTTGTTCA 1259
Query 1409 GGAGGCCATTATTGTCATCAAAGATATCTTCAGAAGATATCCAAACACGTATGAGTCCAT 1468
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1260 GGAGGCCATTATAGTCATCAAAGATATCTTTAGAAGATATCCAAACACGTATGAGTCCAT 1319
Query 1469 AATTGCAACACTCTGTGAGAGTTTAGACACTTTGGATGAACCAGAAGCTAAGGCATCTAT 1528
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1320 AATTGCAACACTCTGTGAGAGTCTAGACACATTGGATGAACCAGAAGCTAAGGCATCTAT 1379
Query 1529 GATATGGATCATTGGTGAATATGCTGAAAGAATTGACAATGCCGATGAGCTTCTTGAAAG 1588
||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 1380 GATTTGGATCATTGGTGAATATGCTGAAAGAATCGACAATGCGGATGAACTTCTTGAAAG 1439
Query 1589 CTTTCT-GGAGAATTTTCCTGAGGAACCAGCACAGGTCCAGTTGCAGCTCCTAACTGCTA 1647
||| || ||||||||||||||||||||||||||| |||||| ||||||| || || ||||
Sbjct 1440 CTT-CTTGGAGAATTTTCCTGAGGAACCAGCACAAGTCCAGCTGCAGCTTCTTACAGCTA 1498
Query 1648 CTGTTAAGCTATTCCTGAAGAAGCCAACTGAAGGCCCTCAACAAATGATTCAGGTTGTCT 1707
| || || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1499 CAGTCAAACTATTTCTGAAGAAGCCAACTGAAGGCCCACAACAAATGATTCAGGTTGTCT 1558
Query 1708 TGAATAATGCTACTGTGGAGACGGATAATCCTGATCTCAGAGATCGTGCATACATATACT 1767
|||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1559 TGAATAATGCTACTGTTGAGACAGATAATCCTGATCTCAGGGATCGTGCATACATCTACT 1618
Query 1768 GGCGTCTTCTATCCACTGATCCTGAGGCTGCCAAGGATGTTGTCTTAGCTGAAAAGCCCG 1827
||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||| |
Sbjct 1619 GGCGTCTTCTATCTACTGATCCCGAGGCGGCCAAGGATGTTGTTTTAGCTGAAAAGCCTG 1678
Query 1828 TGATTTCTGACGACTCAAACCAGCTAGACCCATCACTTCTTGATGAGCTTCTTACAAATA 1887
||||| |||||||||||||||| || || || || || || |||||||| ||| ||||||
Sbjct 1679 TGATTACTGACGACTCAAACCAACTTGATCCGTCGCTCCTGGATGAGCTACTTGCAAATA 1738
Query 1888 TTTCGACCTTGTCCTCTGTGTACCACAAACCCCCAGAGGCTTTTGTTACCCGCTTGAAAA 1947
| || ||||||||||||||||| ||||| || |||||||||||||| |||||||||||||
Sbjct 1739 TATCCACCTTGTCCTCTGTGTATCACAAGCCGCCAGAGGCTTTTGTAACCCGCTTGAAAA 1798
Query 1948 CGACAGTTCAGAAAACAGAAGACGAGGACTTTGCGGAAGGAAGCGAAGCAGGATAC--T- 2004
| |||||||||||||| ||||| ||||||| || ||||| |||||| |||||||| |
Sbjct 1799 CCACAGTTCAGAAAACGGAAGATGAGGACTATGTAGAAGGGAGCGAAACAGGATACCCTG 1858
Query 2005 ---CATCTAGTAATCCGGTTGATAGTGCAGCTTCTCCTCCAGGTAATATCCCACAGCCT- 2060
||||| |||||||||||||| |||||||||| ||| ||| || || |||| ||
Sbjct 1859 AGACATCTGGTAATCCGGTTGATGGTGCAGCTTCCCCTGCAGCTA----CC-ACAGGCTA 1913
Query 2061 TCCGGAAGACAACCAG-CACCAGCGGTCCCAGCTCCTGTACCTGATCTGCTAGGTGACCT 2119
| | ||| || || | || | |||||||||||| || |||||||| ||||||||
Sbjct 1914 T--GTCC--CAA--AGTCAGCTGCTGCCCCAGCTCCTGTGCCCGATCTGCTTGGTGACCT 1967
Query 2120 GATGGGATTGGATAATGCCGCTATTGTCCCGGTTGATGATCCCATAACTCAATCTGGTC- 2178
||||| | |||||||| || || ||||| || ||||| |||| ||||| || ||||
Sbjct 1968 AATGGGGTCAGATAATGCTGCAATCGTCCCTGTAGATGAACCCACAACTCCGTCAGGTCG 2027
Query 2179 CTCCTCTGCCCGTTGTCGTCCCAGCTTCAAGTGGTCAAGGTCTGCAGATAAGCGCTCAAT 2238
| || || || |||||| | ||||| |||| ||||||||||||||||| ||||||||||
Sbjct 2028 C-CCGCTTCCTGTTGTCCTGCCAGCATCAAAAGGTCAAGGTCTGCAGATTAGCGCTCAAT 2086
Query 2239 TATCCCGAAAAGATGGACAAGTATTTTACAGTATGCTCTTCGAGAACAACTCGCAGTCGG 2298
|| ||||| ||||||| |||||||| |||| ||||||| |||| ||||||||||||||
Sbjct 2087 TAACCCGACAAGATGGTCAAGTATTCTACACTATGCTCCTCGAAAACAACTCGCAGTCAC 2146
Query 2299 TTCTTGATGGTTTCATGATTCAGTTCAACAAAAACACATTCGGCCTTGCAGCTG-CTGGA 2357
|||||||||| |||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 2147 TTCTTGATGGCTTCATGATTCAGTTCAACAAAAACTCATTCGGCCTTGCAGCTGTC-GGA 2205
Query 2358 TCTCTTCAGATTCCGCCTTTGCATCCCGCAACATCCGCCAGGACAATGCTACCTATGGTC 2417
|||| ||| |||||||| |||| |||| | |||| |||||||||||| | || |||||
Sbjct 2206 CCTCTCCAGGTTCCGCCTCTGCAACCCGGAGCATCTGCCAGGACAATGTTGCCAATGGTA 2265
Query 2418 TTGTTCCAAAACATGTCTGCTGGGCCT-CCAAGCTCGCTCTTACAAGTCGCTGTCAAAAA 2476
|||| ||| ||||||||||||||||| ||| ||||| | || ||||| || || |||||
Sbjct 2266 TTGTCCCAGAACATGTCTGCTGGGCCCACCA-GCTCGGTATTGCAAGTTGCCGTAAAAAA 2324
Query 2477 CAACCAGCAGCCCGTGTGGTACTTC-ACCGATAAGATTATACTTCATGCTCTTTTCGGTG 2535
|||||||||||| || ||||||||| | ||||||||| ||||||||||||||||| |
Sbjct 2325 CAACCAGCAGCCTGTCTGGTACTTCGAG-GATAAGATTGTACTTCATGCTCTTTTCTCAG 2383
Query 2536 AAGACGGTAGAATGGAACGTGGAACCTTCCTTGAGACATGGAGGTCGTTACCGGACTCAA 2595
|||| ||||| |||||||| || |||||||| ||||||||||| ||||||||||| ||||
Sbjct 2384 AAGATGGTAGGATGGAACGCGGGACCTTCCTCGAGACATGGAGATCGTTACCGGATTCAA 2443
Query 2596 ATGAAGTCCTGAAAGAATTCCCCGGGATCACCATCACGAGCGTCGAATCAACTA-TCGAA 2654
| ||||||| ||| |||||||||||||| |||||||||||||| || ||||| | | ||
Sbjct 2444 ACGAAGTCCAGAAGGAATTCCCCGGGATAACCATCACGAGCGTGGAGTCAAC-ACTTGAT 2502
Query 2655 TTGCTCACAGCATTCAA-CATGTTCTTTATAGCAAAGCGCAAGAACGGGAACCAAGACGT 2713
||||| | |||| ||| ||||||||| ||||||||||| || ||||| |||||||||||
Sbjct 2503 TTGCTTGCCGCAT-CAAACATGTTCTTCATAGCAAAGCGTAAAAACGGAAACCAAGACGT 2561
Query 2714 GATCTA-CTTATCAGCCAAAG-ATCCACGAGATGTACCGTTTTTGATCGAGCTCACTGCA 2771
| | || ||| |||||||| | | ||| ||| ||||||| |||||||| || || ||
Sbjct 2562 GCTGTATCTT-TCAGCCAAGGTA-CCAAGAGGCATACCGTTCTTGATCGAACTAACGGCC 2619
Query 2772 ATGGTGGGCCAACCAGGTCTCAAATGCGCAGTGAAAACTCCCACTCCCGAGATTGCGCCT 2831
|||||||| ||||| ||||| ||||| ||||| || ||||| ||||| ||||| || |||
Sbjct 2620 ATGGTGGGTCAACCTGGTCTGAAATGTGCAGTCAAGACTCCAACTCCTGAGATCGCTCCT 2679
Query 2832 CTCTTCTTCGAAGCTTTGGAGCTTCTCTTCAAGGCTTGATGATT 2875
|||||||| ||||| | || |||||||||| |||||| ||||
Sbjct 2680 CTCTTCTTTGAAGCCGTCGAAATTCTCTTCAAAGCTTGA-GATT 2722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113356569120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5