BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G11393.1

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg895312 jgi|Araly1|895312|Al_scaffold_0006_3308                    344    2e-94


> Ahg895312 jgi|Araly1|895312|Al_scaffold_0006_3308
Length=237

 Score =  344 bits (186),  Expect = 2e-94
 Identities = 221/238 (93%), Gaps = 2/238 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAAAGACTCAAAACTTTGTTTGCTTCACCGCCGTCTTGCTCATCCTCATTTTGGTC  60
            |||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| 
Sbjct  1    ATGGCAAAGATTCAAAACTCTGTTTGCTTCACCGCCGTCTTGCTCATCCTCATATTGGTT  60

Query  61   TCGACCGAGATACCAATGATTG-AGGGAAAAACATGTAAGCTTTTTAGAGGAGAATGTCC  119
            || ||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||
Sbjct  61   TCAACCGAGATACCAAAGATTGAAGGG-AAAACATGTAAGCTTTTTAGAGGAGAATGTCC  119

Query  120  CGTGGATCCGTGCGAACCTGAAAAATGTGATGAGTGTTGCAAGGCAACGTTTGGGAAACA  179
             ||||||||||| ||||||| |||||| || || |||||||| ||| |||||||||||||
Sbjct  120  TGTGGATCCGTGTGAACCTGCAAAATGCGACGAATGTTGCAAAGCAGCGTTTGGGAAACA  179

Query  180  AATTTGTGGAAAATGCGAACAAGAGAGCACTGAATTACATTGTCATTGTCGCCGCTAA  237
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  180  AATTTGTGGAAAATGCGAACAAGAGAGCACCGAATTACATTGTCATTGTCGCCGCTAA  237



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8172287854


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5