BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11410.1
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942999 jgi|Araly1|942999|scaffold_603543.1 1531 0.0
Ahg946628 jgi|Araly1|946628|scaffold_702857.1 99.0 8e-20
> Ahg942999 jgi|Araly1|942999|scaffold_603543.1
Length=997
Score = 1531 bits (829), Expect = 0.0
Identities = 946/1002 (94%), Gaps = 9/1002 (1%)
Strand=Plus/Plus
Query 127 GAAGATAGAAACAA-AACAAACATGTGGCCTTTTTGGTGGAAAGGAGCATCTGGGTTCTC 185
||||| | |||||| | |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1 GAAGACA-AAACAACATCAAA-ATGTGGCCATTTTGGTGGAAAGGAGCATCTGGGTTCTC 58
Query 186 TGCTCGTTCCACAGCTGAAGAAGTCACTCATGGAATCGATGGTACTGGTCTCACTGCTAT 245
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 59 AGCTCGTTCCACAGCTGAAGAAGTCACTCATGGAATCGATGGTACTGGTCTCACAGCTAT 118
Query 246 CGTCACAGGAGCATCAAGTGGTATTGGGGAAGAGACTACTCGTGTTCTTGCTCTTCGTGG 305
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 119 CGTCACAGGAGCATCAAGTGGTATTGGGGAAGAGACTACGCGTGTTCTTTCTCTTCGTGG 178
Query 306 TGTTCATGTTGTAATGGCGGTAAGGAATACAGATTCTGGTAATCAAGTCAGAGATAAGAT 365
||||||||||||||||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct 179 TGTTCATGTTGTAATGGCGGTAAGGAACATAGATTCTGGTAATCAAGTTAGAGAAAAGAT 238
Query 366 ACTTAAGGAAATACCTCAGGCTAAGATTGATGTAATGAAGTTGGATCTTAGCTCTATGGC 425
||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 239 ACTTAAGGAAACACCTGAGGCTAAGATTGATGTAATGAAGTTAGATCTTAGCTCTATGGC 298
Query 426 TTCTGTCAGGAGCTTTGCATCAGAGTATC-AGTCTTTGGACCTTCCCTTGAATCTTCTCA 484
||||||||||||||||||||||||||| | |||||||| ||| |||||||||||||||||
Sbjct 299 TTCTGTCAGGAGCTTTGCATCAGAGTA-CAAGTCTTTGAACCATCCCTTGAATCTTCTCA 357
Query 485 TCAATAATGCGGGGATTATGGCATGTCCCTTCTTGCTTTCTAGCGACAACATTGAATTAC 544
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 358 TCAATAATGCAGGGATTATGGCATGTCCCTTCATGCTTTCTAGCGACAACATTGAATTAC 417
Query 545 AGTTTGCAACCAATCATTTGGGTCATTTTCTGTTGACAAACCTTCTTTTGGAGAGGATGA 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 418 AGTTTGCAACCAATCATTTGGGTCATTTTCTGTTGACAAACCTTCTTTTGGAGACAATGA 477
Query 605 AGAAAACAGCTAGTGAAAGCAATAGAGAAGGAAGAATTGTTATTGTCTCATCAGAAGGTC 664
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 478 AGAAAACAGCTAATGAAAGCAATAGAGAAGGAAGAATTGTTATTGTCTCGTCAGAAGGTC 537
Query 665 ATCGATTTGCTTACCGGGAAGGTGTTCAGTTTGACAAAATAAATGATGAAGCAAGGTACA 724
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 538 ATCGATTTGCTTACCGGGAAGGTGTTCGGTTTGACAAAATAAATGATGAAGCAAGTTACA 597
Query 725 ATACTTTGCAAGCATATGGTCAGTCAAAGCTCG-GTAACATCTTGCACGCTACTGAGCTC 783
||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||
Sbjct 598 ATACTTTGCAAGCATATGGTCAGTCAAAGCT-GTGTAACATATTGCACGCTACTGAGCTC 656
Query 784 GCTAGGCTATTCAAGGAACAAGGTGTGAATATCACTGCTAATTCACTTCATCCTGGATCC 843
||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 657 GCTAGGCAAATCAAGGAACAAGGTGTGAATATCACTGCTAATTCACTTCATCCCGGATCC 716
Query 844 ATTATGACCAATCTTTTACGCTACCACAGCTTCATAAATACAATTGGTAATGCGGTGGGG 903
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 717 ATTATGACCAATCTTTTGCGCTACCACAGCTTCATAAATACGATTGGTAATGCGGTGGGA 776
Query 904 AAGTATGTGCTGAAGAGCATTCCACAGGGAGCGGCAACTACCTGTTATGCTGCGCTTCAT 963
||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||
Sbjct 777 AAGTATGTGCTGAAGAGTATTCCCCAGGGAGCGGCAACTACGTGTTATGCTGCGCTACAT 836
Query 964 CCTCAGGCAAAAGGAGTGAGTGGAGAATACTTGATGGACAACAACATATCTGACCCTAAT 1023
|||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 837 CCTCAGGCAAAAAGAGTGAGTGGAGAATACTTGATGGACAGCAACATATCTAACCCTCAT 896
Query 1024 TCTCAGGGTAAAGACAAAGATCTGGCCAAAAAACTATGGGAGTTTAGCTTGAGGCT-AAC 1082
||||||||||||||||||||| | ||||| |||||||||||||| ||||||| || |||
Sbjct 897 TCTCAGGGTAAAGACAAAGATTTAGCCAAGAAACTATGGGAGTTCAGCTTGAC-CTTAAC 955
Query 1083 TGGTGAAGAAGAATCATAGATACTTTTTCGAAGTTACAGTCT 1124
||||||||||||||||||||||||||| | |||||||| |||
Sbjct 956 TGGTGAAGAAGAATCATAGATACTTTTGCTAAGTTACAATCT 997
> Ahg946628 jgi|Araly1|946628|scaffold_702857.1
Length=329
Score = 99.0 bits (53), Expect = 8e-20
Identities = 57/59 (97%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 195 CACAGCTGAAGAAGTCACTCATGGAATCGATGGTACTGGTCTCACTGCTATCGTCACAG 253
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1 CACAGCTGAAGAAGTCACTCATGGAATCGATGGTACTGGTCTCACAGCTATTGTCACAG 59
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48987948345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5