BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11420.1
Length=3451
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489971 jgi|Araly1|489971|fgenesh2_kg.6__3105__AT4G11420.1 4870 0.0
Ahg889834 jgi|Araly1|889834|Al_scaffold_0007_1820 436 4e-121
> Ahg489971 jgi|Araly1|489971|fgenesh2_kg.6__3105__AT4G11420.1
Length=3335
Score = 4870 bits (2637), Expect = 0.0
Identities = 3175/3417 (93%), Gaps = 108/3417 (3%)
Strand=Plus/Plus
Query 3 AGAAACCCTAGAGTTGCTTCCGCTTCGCTTCTCGTCTCTCTTATCAGTCTTCTCTTTTCA 62
||||||||||||||||||||||||||| | | |||| | ||||||||| |||
Sbjct 1 AGAAACCCTAGAGTTGCTTCCGCTTCG-----C-T-TCTC---T---TCTTCTCTTATCA 47
Query 63 CGGCTACAAGGCTAATTGAGAGTGTCCCTTGCGTTAGAGTTTGTTACTAGCTTTTTTCGT 122
|||||||||||||||||||||||||||||||| | | || ||||||||
Sbjct 48 CGGCTACAAGGCTAATTGAGAGTGTCCCTTGC----------G-T--TA---TTTTTCGT 91
Query 123 CTGAAACATGGCGAATTTTGCCAAACCAGAGAACGCGTTGAAGCGTGCTGATGAATTGAT 182
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 92 CTGAAACATGGCGAATTTTGCTAAACCAGAGAACGCGTTGAAGCGTGCTGATGAATTGAT 151
Query 183 CAATGTTGGACAGAAACAAGATGCTCTTCAGGCGCTTCATGATCTCATTACTTCCAAGAG 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 TAATGTTGGACAGAAACAAGATGCTCTTCAGGCGCTTCATGATCTCATTACTTCCAAGAG 211
Query 243 ATACAGAGCTTGGCAGAAACCGCTTGAGAAGATCATGTTTAAGTATCTTGATCTTTGTGT 302
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 212 ATACAGAGCTTGGCAGAAACCTCTTGAAAAGATCATGTTTAAGTATCTTGATCTTTGTGT 271
Query 303 TGACTTGAAGAGGGGTCGATTCGCTAAGGATGGATTGATTCAGTATCGTATTGTTTGCCA 362
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 272 TGACTTGAAGAGGGGTCGGTTTGCTAAGGATGGGTTGATTCAGTATCGTATTGTTTGCCA 331
Query 363 GCAAGTGAATGTCAGTTC-CTTGGAGGAAGTTATCAAGCACTTCCTACATCTTGCTACTG 421
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 332 GCAAGTGAATGTCAGTTCTCTT-GAGGAAGTTATCAAGCACTTCCTACATCTTGCTACTG 390
Query 422 ACAAAGCTGAGCAAGCTCGGTCTCAGGCGGATGCCCTTGAGGAGGCTCTTGATGTTGATG 481
| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 391 AGAAAGCTGAGCAGGCTCGTTCTCAGGCTGATGCCCTTGAGGAGGCTCTTGATGTTGATG 450
Query 482 ACCTTGAAGCTGATAGGAAGCCTGAGGATTTACAGCTAAGTATTGTCAGTGGGGAGAAGG 541
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 451 ACCTTGAAGCTGATAGGAAGCCTGAGGATTTACAGCTGAGTATTGTCAGTGGGGAGAAGG 510
Query 542 GAAAAGATAGGTCTGACCGTGAGTTGGTCACCCCATGGTTTAAGTTTC-TGTGGGAGACA 600
|||||||||||||||||||||| ||||||||||||||||| ||| ||| ||||||||||
Sbjct 511 GAAAAGATAGGTCTGACCGTGAATTGGTCACCCCATGGTTCAAG-TTCTTGTGGGAGACG 569
Query 601 TACAGGACAGTCCTTGAGATATTGCGAAACAACTCAAAGTTGGAAGCACTTTATGCGATG 660
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 570 TACAGGACAGTGCTTGAGATATTGCGAAACAACTCAAAGTTGGAGGCACTTTATGCGATG 629
Query 661 ACAGCACATAAAGCCTTCCAGTTCTGTAAGCAGTACAAGCGAACAACAGAGTTCCGTAGG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 ACAGCACATAAAGCCTTCCAGTTCTGTAAGCAGTACAAGCGAACAACAGAGTTCCGTAGG 689
Query 721 CTTTGTGAAATTATAAGAAATCATTTGGCAAACCTGAACAAGTACAGAGACCAAAGGGAC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 CTTTGTGAAATTATAAGAAATCATTTGGCAAACCTGAACAAGTACAGAGACCAAAGGGAC 749
Query 781 CGACCTGACTTATCAGCCCCTGAGAGCTTGCAGCTGTATCTGGACACAAGGTTTGATCAG 840
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 750 CGACCTGACTTATCAGCCCCTGAGAGCTTGCAACTGTATCTGGACACAAGATTTGATCAG 809
Query 841 TTGAAAGTTGCTACTGAGCTTGGACTTTGGCAGGAAGCTTTTCGCTCTGTTGAAGATATC 900
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 810 TTGAAAGTTGCTACCGAGCTTGGGCTTTGGCAGGAAGCTTTTCGCTCTGTTGAAGATATC 869
Query 901 TATGGATTAATGTGCATGGTCaaaaaaaCGCCCAAGTCATCTTTATTGATGGTTTATTAT 960
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 TATGGACTAATGTGCATGGTCAAAAAAACGCCCAAGTCATCTTTATTGATGGTTTATTAT 929
Query 961 TCCAAATTGACTGAGATCTTCTGGATTTCTTCTAGCCATCTTTATCATGCTTATGCATGG 1020
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 TCCAAATTGACCGAGATCTTCTGGATTTCTTCTAGCCATCTTTATCATGCTTATGCATGG 989
Query 1021 TTTAAGCTGTTTAGTCTGCAGAAAAATTTCAACAAGAATTTAAGCCAAAAGGATTTGCAG 1080
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 990 TTTAAGCTATTTAGTCTGCAGAAAAATTTCAATAAGAATTTAAGCCAAAAGGATTTGCAG 1049
Query 1081 CTAATAGCGTCATCTGTTGTCTTGGCGGCATTGTCCATTCCACCATTTGATCGGGCTCAG 1140
|| || | ||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1050 CTGATTTCATCATCTGTTGTCTTGGCGGCATTGTCCGTTCCACCGTTTGATCGGGCTCAG 1109
Query 1141 AGCGCATCCCATATGGAACTTGAAAATGAGAAAGAACGCAATTTGAGGATGGCTAACCTC 1200
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1110 AGTGCATCCCATATGGAACTTGAAAATGAGAAAGAACGCAATTTGAGGATGGCCAACCTC 1169
Query 1201 ATTGGATTCAATCTTGAACCTAAATTTGAGGGCAAAGATATGCTTTCCCGGTCAGCTCTT 1260
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1170 ATTGGATTCAATCTTGAACCTAAATTTGAGGGCAGAGATATGCTTTCCCGGTCAGCTCTT 1229
Query 1261 CTGTCAGAGCTGGTTTCAAAAGGTGTTTTGAGCTGTGCATCTCAGGAGGTCAAAGATCTT 1320
||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1230 CTGTCAGAGCTGGTTTCAAGAGGTGTTCTGAGCTGTGCATCCCAGGAGGTCAAAGATCTT 1289
Query 1321 TTCCATGTTTTGGAGCATGAATTTCACCCACTTGATCTTGGCTCCAAGATTCAGCCTTTG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 TTCCATGTTTTGGAGCATGAATTTCACCCACTTGATCTTGGCTCCAAGATTCAGCCTTTG 1349
Query 1381 CTGGAAAAGATTTCCAAATCTGGTGGGAAACTGTCCTCAGCTCCTTCTTTACCAGAAGTG 1440
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1350 CTGGAAAAGATTTCAAAATCTGGTGGGAAACTGTCCTCAGCTCCTTCTTTACCAGAAGCG 1409
Query 1441 CAACTTTCCCAATATGTTCCTTCTCTGGAGAAGCTTGCTACTCTGAGGCTACTTCAACAG 1500
|| |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 1410 CAGCTTTCCCAATATGTTCCTGCTCTGGAGAAGCTTGCTACTCTGAGGCTACTACAGCAG 1469
Query 1501 GTGTCTAAGATTTATCAGACAATAAGAATTGAGAGTTTATCTCAGTTGGTACCCTTCTTT 1560
|| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1470 GTTTCTAAGATTTATCAAACCATAAGAATTGAGAGTTTATCTCAGTTGGTACCCTTCTT- 1528
Query 1561 C-AATTCTCAGAGGTAGAGAAGATTTCTGTTGATGCTGTGAAGAACAATTTTGTTGCCAT 1619
| ||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1529 CGAATTCTCAGTGGTAGAGAAGATATCTGTTGATGCTGTGAAGAACAATTTCGTTGCCAT 1588
Query 1620 GAAAGTTGATCACATGAAGGGTGTTGTAATTTTTGGAAATTTGGGTATTGAGTCTGATGG 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 GAAAGTTGATCACATGAAGGGTGTTGTAATTTTTGGAAATTTGGGTATTGAGTCTGATGG 1648
Query 1680 ACTGAGGGATCATCTGGCTGTTTTTGCCGAGTCTTTGAGCAAAGTAAGAGCTATGCTGTA 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 ACTGAGGGATCATCTGGCTGTTTTTGCCGAGTCTTTGAGCAAAGTAAGAGCTATGCTGTA 1708
Query 1740 TCCTGTCCCAAGTAAAGCATCAAAACTAGCTGGCGTTATACCAAATTTAGCAGATACTGT 1799
|||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 1709 TCCTGTCCCAAGTAAAGCATCAAAACTAGCTGGCATAATACCAAATTTAGCGGATACTGT 1768
Query 1800 TGAGAAAGAGCACAAAAGACTGCTTGCTCGTAAATCAATCATTGAAAAGAGGAAGGAGGA 1859
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1769 TGAGAAAGAACACAAAAGACTGCTTGCTCGTAAATCAATCATTGAAAAGAGGAAGGAGGA 1828
Query 1860 TCAAGAGCGTCAGCAACTAGAAATGGAACGTGAAGAGGAGCAGAAACGGCTTAAGCTTCA 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1829 TCAAGAGCGTCAGCAACTAGAAATGGAACGTGAAGAGGAGCAGAAACGGCTTAAGCTTCA 1888
Query 1920 GAAGCTAACTGAAGAGGCAGAACAAAagagacttgcagcagagcttgcagagagaagaaa 1979
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1889 GAAGCTAACTGAGGAGGCAGAACAGAAGAGACTTGCAGCAGAGCTTGCAGAGAGAAGGAA 1948
Query 1980 acaaagaatccttagagagatagaggagaaggagcttgaagaagCCCAAGCTTTACTGGA 2039
||||||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 1949 ACAAAGAATCCTTAGGGAGATAGAGGAGAAGGAGCTTGAAGAAGCTCAGGCTTTGCTGGA 2008
Query 2040 AGAGACAGAGAAGCGCATGAAAAAGGGAAAGAAGAAGCCACTTTTAGACGGAGAGAAGGT 2099
|| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 2009 GGACACAGAGAAGCGCATGAAAAAGGGAAAGAAGAAGCCGCTTTTAGATGGAGAGAAGGT 2068
Query 2100 GACAAAGCAATCTGTGAAGGAAAGGGCCTTAACTGAGCA-GCTCAAGGAAAGGCAAGAAA 2158
|||||||||| |||||| ||| ||||||||||||||||| | ||||||||||||||||||
Sbjct 2069 GACAAAGCAAACTGTGATGGAGAGGGCCTTAACTGAGCAAG-TCAAGGAAAGGCAAGAAA 2127
Query 2159 TGGAGAAGAAGCTTCAAAAGCTTGCCAAAACGATGGATTATTTGGAAAGAGCAAAGAGAG 2218
|||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 2128 TGGAGAAGAAACTCCAAAAACTTGCCAAAACTATGGATTATTTGGAAAGAGCAAAGAGAG 2187
Query 2219 AAGAGGCTGCTCCATTGATTGAAGCTGCATATCAGCGAAGACTGGTAGAGGAAAGAGAGT 2278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2188 AAGAGGCTGCTCCATTGATTGAAGCTGCATATCAGCGAAGACTGGTAGAGGAAAGAGAGT 2247
Query 2279 TTTATGAGCGTGAACAACAGCGTGAAGTTGAACTCAGTAAAGAGCGTCATGAGAGTGACT 2338
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2248 TTTATGAGCGCGAGCAACAGCGTGAAGTTGAACTCAGTAAAGAGCGTCATGAGAGTGACT 2307
Query 2339 TGAAGGAGAAGAACAGGTTGTCCAGAATGTTGGGTAATAAGGAAATATTCCAAGCACAAG 2398
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2308 TGAAGGAGAAAAACAGGTTGTCCAGAATGTTGGGTAATAAGGAAATATTCCAAGCACAAG 2367
Query 2399 TGATTAGTCGTCGACAAGCAGAGTTTGACAGAATCAGGACGGAGAGAGAGGAGCGTATCA 2458
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2368 TGATTAGTCGACGACAAGCAGAGTTTGACAGAATAAGGACGGAGAGAGAGGAGCGTATCA 2427
Query 2459 GTAAAATAATCCGAGAGAAGAAGCAAGAAAGGGATATCAAGAGGAAGCAGATATATTATT 2518
| ||||||| |||| | |||||||||||||||||| ||||||||||||||||||||||
Sbjct 2428 GCCAAATAATTCGAGCCAGGAAGCAAGAAAGGGATATTAAGAGGAAGCAGATATATTATT 2487
Query 2519 TGAAAATTgaagaagaaaggattaggaagctgcaggaagaagaggaagctcgcaagcagg 2578
||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||
Sbjct 2488 TGACAATTGAAGAAGAAAGAATTAGGAAGCTACAGGAAGAAGAGGAAGCTCGCAAGCGGG 2547
Query 2579 aagaagcTGAGAGGCTCAAGAAGGTAGAAGCTGAACGCAAAGCAAACTTGGAT-AAAGCT 2637
|||||||||||||||||||||||| | ||||||||||||||||||| |||||| ||| |
Sbjct 2548 AAGAAGCTGAGAGGCTCAAGAAGGAACAAGCTGAACGCAAAGCAAAGTTGGATGAAA--T 2605
Query 2638 TT-TGAGAAGCAAAGGCAGAGAGAGATAGAGCTGGAAGAGAAAAGTAGGCGGGAACGAGA 2696
| ||||||||||||||||||||||| |||| |||| |||||| | |||| |||||||||
Sbjct 2606 TGCTGAGAAGCAAAGGCAGAGAGAGAGAGAGGTGGAGGAGAAAGGAAGGCTGGAACGAGA 2665
Query 2697 AGA-GCTGTTGAGAGGAACTA--A-TGCACCACCTGCTCGCCTTGCAGAGCCTACTGTTA 2752
|| || ||||| |||||||| | |||||| ||||||||||||||||||||||| ||||
Sbjct 2666 AGCTGC-GTTGAAAGGAACTACTAATGCACCGCCTGCTCGCCTTGCAGAGCCTACAGTTA 2724
Query 2753 CTCCTGTTGGAACTACCGCACcagcagc-agcagcagcagcagcaggagcaccagcagca 2811
|||||| ||||||| |||| || || || | ||||||||||| |||| || ||| |
Sbjct 2725 CTCCTGCTGGAACTGCCGCCCCTGCTGCTA-CAGCAGCAGCATCAGGTGCGG--GCAA-A 2780
Query 2812 CCTTATGTTCCGAAGTGGAAGCGCCAGACTACTGAGGTCTCAGG-CC-C-ATCAGCA-C- 2866
| ||||||| |||||||||| ||||||||||||||||||| || | | ||||| |
Sbjct 2781 --T-ATGTTCCTAAGTGGAAGCTCCAGACTACTGAGGTCTCATCACCACCAACAGCAGCA 2837
Query 2867 C-AACATCATCAGAAACTGACCGAC-GGTCCAACCGTGGGCCGCCTCCCGGAGATGACCA 2924
| |||| |||||||||||||||| | ||||||||||||| |||||||| |||||||||||
Sbjct 2838 CCAACACCATCAGAAACTGACCG-CTGGTCCAACCGTGGACCGCCTCCAGGAGATGACCA 2896
Query 2925 CTGGGGAAGCAACAGAGGAGCCG-CTCAGAATACTGACCGGTGGACTAGTAATAGGGAAA 2983
|||||||| || ||||||| ||| ||||||||||||||||||||||||||
Sbjct 2897 CTGGGGAAACAGCAGAGGA-CCGGCTCAGAATACTGACCGGTGGACTAGT---------- 2945
Query 2984 GATCTGGACCTCCAGCTGAAGGAGGAGACCGTTGGGGTTCTGGTCCTAGAGGCAGTGATG 3043
| | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2946 ---C----C-TCCAGCTGAAGGAGGAGACCGTTGGGGTCCTGGTCCTAGAGGCAGTGATG 2997
Query 3044 ATCGCCGATCCACATTTGGAAGCTCCAGGCCCAGGCCAACACAGCGTTGAGTAATAATAA 3103
| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2998 AACGCCGATCTGCATTTGGAAGCTCCAGACCCAGGCCAACACAGCGTTGAGTAATAATAA 3057
Query 3104 tttttttGGTCTCAATCTCCATGGGAATGAATGAAAAAGGTTAT--CTCTGGATTTTCAA 3161
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 3058 ATTTTTTGGTCTCAATCTCCATGGGAATGAATGAAA--GGTTATATCTCTGGATTTTCAA 3115
Query 3162 CATCACAGCACTCTTCTTTAGCCCAAACCTGTCTCTTCTTCTTTTGAAGATTGCTCATCT 3221
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3116 CATCACAGCACTCCTCTTTAGCCCAAACCTGTCTCTTCTTCTTTTGAAGATTGCTCATCT 3175
Query 3222 TTTATAAGTTTTTATGAAAGATTTTAAAACATGTTA-GACTCGTTTTTTGCTCTACACA- 3279
|||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3176 TTTATATGTTTT-ATGAAAGATTTTAAAACATGTTAAGACTCGTTTTTTGCTCTACACAA 3234
Query 3280 C-CCA-GAGAGAGTTGTTATTTCCTTCTTCGGTTGGATCTTTCTTTGTTTGTCCAATTTA 3337
| ||| |||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct 3235 CACCAAGAGAGAGTTGCTATTTCCTTCTTCGGTTGGATCTTT----GCTTGTCCAA---- 3286
Query 3338 TTTCCAACTTTCTGCTGTAAAAACCTTTGACATTGATCAGCTTCTCTTTCAA-GCAA 3393
| ||||||||||||||||||||||||| ||||||||||| |||| | ||||
Sbjct 3287 ---C----TTTCTGCTGTAAAAACCTTTGACATCGATCAGCTTCT-TTTCCATGCAA 3335
> Ahg889834 jgi|Araly1|889834|Al_scaffold_0007_1820
Length=1068
Score = 436 bits (236), Expect = 4e-121
Identities = 404/482 (84%), Gaps = 23/482 (5%)
Strand=Plus/Plus
Query 1541 CTCAGTTGGTACCCTTCTTTC-AATTCTCAGAGGTAGAGAAGATTTCTGTTGATGCTGTG 1599
||||||| || || ||| ||| | ||||||| ||| |||| ||| || | |||||||||
Sbjct 210 CTCAGTT-GTTCCTTTC-TTCGACTTCTCAGCGGTTGAGACGATATCAGCTGATGCTGT- 266
Query 1600 AAG-AACAATTTTGTTGCCATGAAAGTTGATCACATGAAGGGTGTTGTAATTTTTGGAAA 1658
||| |||||||| |||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 267 AAGAAACAATTTCGTTGACATGAAAGTTGATCACATAAAGGGTGTTGTAATTTTTGGAAA 326
Query 1659 TTTGGGTATTGAGTCTGATGGACTGAGGGATCATCTGGCTGTTTTTGCCGAGTCT-TTGA 1717
| || ||| |||||||||||| |||| || | ||| ||| ||||||| ||| || | ||
Sbjct 327 TCTGAGTAATGAGTCTGATGGGCTGAAAGAACCTCTAGCTATTTTTGCTGAGACTATGGA 386
Query 1718 GCAAAGT-AAGAGCTATGCTGTATCCTGTCCCAAGTAAAGCATCAAAACTAGCTGGCGTT 1776
|||| | |||||| ||| | | ||||| |||||||||||||||||| | | || || |
Sbjct 387 -CAAA-TCAAGAGCGATGTTATTTCCTGCCCCAAGTAAAGCATCAAAGGTTGGTGACG-T 443
Query 1777 A-TACCAAATTTAGCA-GATACTGTTGAGAAA-GAGCACAAAAGACTGCTTGCTCGTAAA 1833
| |||||||| ||| | || ||||| || ||| |||||||||||||||||| |||| |||
Sbjct 444 AGTACCAAATCTAG-AGGAGACTGTAGA-AAAGGAGCACAAAAGACTGCTTTCTCGGAAA 501
Query 1834 TCAATCATTGAAAAGAGGAAGGAGGATCAAGAGCGTCAGCAACTAGAAATGGAACGTGAA 1893
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 502 TCAATCATTGAAAAGAGGAAGGAGGAACAAGAGCGTCAGCAACTAGAGATGGAACTTGAA 561
Query 1894 GAGGAGCAGA-AACGGCTTAAGCTTCAGAAGCTAACTGAA-GAGGCAGAACAAAagagac 1951
|||||||||| || | |||||||||| ||||||||| || ||||||||||| |||||||
Sbjct 562 GAGGAGCAGAGAAAG-CTTAAGCTTCTGAAGCTAACC-AATGAGGCAGAACAGAAGAGAC 619
Query 1952 ttgc-agcagagcttgcag-agagaagaaaacaaagaatccttagagagatagaggagaa 2009
|||| | |||||||| || |||| |||| ||| ||||| | ||| | ||||||||||||
Sbjct 620 TTGCGA-CAGAGCTTA-AGGAGAGGAGAAGACACAGAATTCATAGGGGGATAGAGGAGAA 677
Query 2010 gg 2011
||
Sbjct 678 GG 679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130309129952
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5