BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11440.1
Length=2038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943001 jgi|Araly1|943001|scaffold_603545.1 2109 0.0
> Ahg943001 jgi|Araly1|943001|scaffold_603545.1
Length=1892
Score = 2109 bits (1142), Expect = 0.0
Identities = 1427/1562 (91%), Gaps = 30/1562 (2%)
Strand=Plus/Plus
Query 440 AAGGCTAAGTCTCAATTGTCATCGACTCCACAGTCTAGGGTTAGATTATTGGGAGTGGCT 499
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 348 AAGGCTAATTCTCAATTGTCATCGACTCCACAGCCGAGGGTTAGATTATTGGGAGTGGCT 407
Query 500 GAAAAGATGTATAGTTTCGATCCGTATAACCGAAA-AAGTTTGTTGAATCAGACTGATGG 558
||||||||||| ||||||||||||||||||| ||| ||||| ||| ||||||| ||||||
Sbjct 408 GAAAAGATGTACAGTTTCGATCCGTATAACC-AAAGAAGTTGGTTTAATCAGAGTGATGG 466
Query 559 ATCTAAGTCTATATGTGGTTCTTGCAAAGGGATTGGTTTTCCGTTCGAGGCTAGATGGAA 618
| | ||||||||| |||||| |||||||| || |||| ||| ||||||||||||||||||
Sbjct 467 AGCCAAGTCTATAAGTGGTTTTTGCAAAGAGAATGGTATTCTGTTCGAGGCTAGATGGAA 526
Query 619 GACGTTGTATAGCTGGATGGAAGGAGT-GCTTCCAAGTTCTACTAGATATCATGAAGAAG 677
||| ||||||||||||||||||||||| | |||| | |||||||||||||||||||||||
Sbjct 527 GACATTGTATAGCTGGATGGAAGGAGTAG-TTCCCACTTCTACTAGATATCATGAAGAAG 585
Query 678 GGGCTGAGATTGAGAAGAGAGAAAATTTTGAAGGCTGTATTCTTAATCCAG-TGAGCAGT 736
|||||||||||||||||||||| ||||||||| | ||||| |||||| | ||||||||
Sbjct 586 CGGCTGAGATTGAGAAGAGAGAACATTTTGAAGACCCTATTCCTAATCC-GTTGAGCAGT 644
Query 737 AAAGAAGAACTCGCATCAAGAAATGGCGATGGTTGTGATTGTGTCTTTGATGCCATTGGT 796
|||| |||||||||||||||||||| | || |||||||||||||||||||| | | ||||
Sbjct 645 AAAGCAGAACTCGCATCAAGAAATGCCAATAGTTGTGATTGTGTCTTTGATACAACTGGT 704
Query 797 GCCAAGGA-CCAATCAACTGTAATTGAACCAAGGAGT-CTTCTATTAGCAACG-GTTGCA 853
||||| || |||||||||||||| ||||||||||||| ||| ||||||||| | || |||
Sbjct 705 GCCAA-GAGCCAATCAACTGTAACTGAACCAAGGAGTCCTT-TATTAGCAA-GCGTCGCA 761
Query 854 GAATCAGTGGTAGACACTAGAGTATCTAGATCTAATGATGTGAACT-ATCTCTTTTTGCT 912
| ||| |||||||||| ||| |||| ||||||||||||||||| | |||||| ||||||
Sbjct 762 GGCTCATTGGTAGACACCAGAATATCAAGATCTAATGATGTGAA-TGATCTCTCTTTGCT 820
Query 913 TTACAAAGATAGGTGTGTCAATAATAAAGGAGTGAATATGATAAGTTCAAAATGTAGCAC 972
|| |||||||||||||| ||||||||||||| |||| || ||||||||||||||||||||
Sbjct 821 TTGCAAAGATAGGTGTGCCAATAATAAAGGACTGAACATAATAAGTTCAAAATGTAGCAC 880
Query 973 GGATTGTGATGCTGAGGTTTCTTCTTCAGGGAATAACTTAGACGAAGACTGCTTATCTAT 1032
|||||| | | | ||||||||||||||||||||||||| |||||||||| |||| |||||
Sbjct 881 GGATTGCGTTACAGAGGTTTCTTCTTCAGGGAATAACTCAGACGAAGACAGCTTTTCTAT 940
Query 1033 CGTTGAAAATAAACAGTTGCTTGAGAAAGATAGAAATGACAAAGAGACTGAAGTTTGTTT 1092
||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct 941 TGTTGAAAATAAACGGTTGCTTGAGAGAGATAGAAAAGACCAAGAGACTGAAGTTTGTTC 1000
Query 1093 GTCCTCTCCAGAAACGACTACTTACG-C-TT-TTGCTAAACAGAGACATGCTTTTGCTGG 1149
|||||| |||| || ||||||||| | || |||| |||||| ||||||||||||||||
Sbjct 1001 GTCCTCGGCAGAGACTCCTACTTACGCCTTTGTTGCCAAACAGCGACATGCTTTTGCTGG 1060
Query 1150 TGCGTTGGCAGGCATAAGCGTCAGTCTTTGTCTTCATCCACTTGATACCGTTAAGACAAT 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 TGCGTTGGCAGGCATAAGCGTCAGTCTTTGTCTTCATCCACTTGATACCGTTAAGACAAT 1120
Query 1210 GATTCAGTCATGCCGCTTGG-AGGAGAAGTCTCTATGCAATACTGGGAGATCAATTATAT 1268
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1121 GATTCAGTCATGCCGCTTGGGAG-AGAAGTCTCTATGCAATACTGGGAGATCAATTATAT 1179
Query 1269 CAGAAAGAGGTTTTTCTGGACTTTATCGAGGGATTGCTAGCAACATTGCCTCATCAGCTC 1328
|||||||||||||||||||||||||||| |||||| |||| ||||||| |||||||||||
Sbjct 1180 CAGAAAGAGGTTTTTCTGGACTTTATCGGGGGATTTCTAGTAACATTGTCTCATCAGCTC 1239
Query 1329 CTATCTCTGCCCTCTATACGTTCACTTATGAAACCGTTAAAGGAACTCTGCTTCCTCTTT 1388
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1240 CTATCTCTGCCCTCTATACGTTCACTTATGAAACCGTTAAAGGAACTCTGCTCCCTCTTT 1299
Query 1389 TTCCTAAGGAATATTGCTCCCT-AGCCCACTGCTTAGCTGGTGGTTCTGCAAGCATTGCA 1447
|||||||||| ||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct 1300 TTCCTAAGGAGTATTGCTCCCTTA-CCCACTGCATAGCTGGTGGTTCTGCAAGCATTGCA 1358
Query 1448 ACTTCTTTTATCTTCACGCCTAGTGAGCGCATAAAACAGCAGATGCAAGTCAGTTCACAT 1507
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1359 ACTTCTTTTATCTTCACGCCAAGTGAGCGCATAAAACAGCAGATGCAAGTCAGTTCACAT 1418
Query 1508 TATCGCAATTGCTGGACCGCATTGGTTGGAATCATCCAAAAGGGTGGTCTGCTTTCTTTA 1567
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1419 TATCGTAATTGCTGGACCGCATTAGTTGGAATCATCCAAAAGGGTGGTCTGCTTTCTTTA 1478
Query 1568 TATGCTGGATGGACTGCAGTGCTATGTAGAAATATCCCGCACTCAATCATTAAGTTCTAT 1627
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1479 TATGCTGGATGGACTGCAGTGCTATGTAGAAATATCCCACACTCAATCATTAAGTTCTAT 1538
Query 1628 GTCTATGAAAACATGAAGCAAATGGTATTACCATCCCCAGGCCCTTGTGGTGAAATGGCT 1687
|||||||||||||||||||| ||||||||||||| ||| ||| |||||||| ||||
Sbjct 1539 GTCTATGAAAACATGAAGCAGGTGGTATTACCATCTATAGGTCCTCGTGGTGAACCGGCT 1598
Query 1688 CAACCCACAACATTACAAACGCTTACCTGTGGAGGACTAGCGGGATCTGCTGCTGCTTTC 1747
|||||||| |||||||||||||| ||||||||||||||||| |||||||||||| |||||
Sbjct 1599 CAACCCACGACATTACAAACGCTCACCTGTGGAGGACTAGCCGGATCTGCTGCTTCTTTC 1658
Query 1748 TTCACAACCCCATTTGATGTAGTAAAAACAAGATTACAAACTCAGATTCCCGGATCTAGA 1807
||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1659 TTCACGACCCCATTTGATGTAGTAAAAACAAGGTTACAAACTCAGATTCCTGGATCTAGG 1718
Query 1808 AACCAACATCCTAGTGTCTATCAAACTCTTCAATCAATACG-AAGGCAAGAAGGTCTGAG 1866
|||||||| |||| ||||||||||||| ||||||||||||| ||| ||||||||| ||||
Sbjct 1719 AACCAACAACCTAATGTCTATCAAACTTTTCAATCAATACGCAAG-CAAGAAGGTTTGAG 1777
Query 1867 AGGGCTATACAGAGGCTTGATCCCCAGACTAGTGATGTACATGTCGCAAGGAGCTATATT 1926
|||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||
Sbjct 1778 AGGGCTATACAGAGGCTTGAGCCCCAGACTTGTGATGTACATGTCACAAGGAGCTATATT 1837
Query 1927 CTTTGCTTCGTATGAATTTTACAAGAGCGTACTCTCTCTAGCAGCGGCGCAGCCTAATAC 1986
||||||||| ||||||||||||||| | |||||| || ||||||||| || ||| |
Sbjct 1838 CTTTGCTTCATATGAATTTTACAAG----T-CTCTCT--AGAAGCGGCGCAACCCAATTC 1890
Query 1987 GT 1988
||
Sbjct 1891 GT 1892
Score = 315 bits (170), Expect = 1e-84
Identities = 233/261 (89%), Gaps = 13/261 (5%)
Strand=Plus/Plus
Query 138 TGTAAGATAAGCAAATGTCTTCTTCTACGAAAGGATCTGTTAAGAA-----G--AG--TT 188
||||||||||||||||| |||||||||| |||||| |||||||||| | || ||
Sbjct 7 TGTAAGATAAGCAAATGGCTTCTTCTACTAAAGGACCTGTTAAGAAGGGTCGTCAGCCTT 66
Query 189 CGATTAAACATAGTTGCAACTTAGCTGAGGTTAAGAGGAAGCTTTCAAAGATCAGTGATC 248
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 67 CGATTAAACATAGTTGCAACTTAGCTGAGGCTAAGAGGAAGCTTTCAAAGATCAGTGATC 126
Query 249 ATCATTCACATGTAGAGTATGCTTATGCCTTCCAGAGGGACAATAGAGAAA-GAGTAGAT 307
|||||||||||||||| ||||| |||| ||||||||||||| ||| |||| ||| |||
Sbjct 127 ATCATTCACATGTAGATTATGCGTATGTTTTCCAGAGGGACAGTAG-GAAACGAGGAGAG 185
Query 308 ACTAGGTTGAGTCAAATCCTCAGTAGGGATGCGTTGATATCAGCCGTTGATTTG-TTGTG 366
|||| ||||||||||||||| || |||||||||||||||||||||||||||||| || ||
Sbjct 186 ACTAAGTTGAGTCAAATCCTGAGCAGGGATGCGTTGATATCAGCCGTTGATTTGATT-TG 244
Query 367 GGATCGCTCGGGTTTTGTTTC 387
||||||||||| |||||||||
Sbjct 245 GGATCGCTCGGATTTTGTTTC 265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76637572940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5