BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11450.1 Length=2786 Score E Sequences producing significant alignments: (Bits) Value Ahg489973 jgi|Araly1|489973|fgenesh2_kg.6__3107__AT4G11450.1 4061 0.0 > Ahg489973 jgi|Araly1|489973|fgenesh2_kg.6__3107__AT4G11450.1 Length=2758 Score = 4061 bits (2199), Expect = 0.0 Identities = 2591/2774 (93%), Gaps = 51/2774 (2%) Strand=Plus/Plus Query 36 gagagagagagagagagagaTAGATTTTTGCACACTCG-AAGAGGGAAATAAAGAAACAA 94 |||||| || || | |||| ||||||||||||||||| |||||||||| |||||||||| Sbjct 5 GAGAGATAGTGACTGCGAGAGAGATTTTTGCACACTCGAAAGAGGGAAAAAAAGAAACAA 64 Query 95 AATGATGCCTTGATGG-AGAAAACTAATTGATTGC--ttttttttCTTCTCTATCTTTTT 151 ||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||| Sbjct 65 AATGATGCCTTGA-GGAAGAAAACTAATTGATTGCTTTTTTTTTTCTTCTCTATCTTTTT 123 Query 152 GTTTACATTACAAAGAACATGATCGGTTTCTCTTATTACCACCTTCAGTGTTTTGTAA-- 209 ||||||||||||||||||||||||||||||||||||||||| | || |||||||||| Sbjct 124 GTTTACATTACAAAGAACATGATCGGTTTCTCTTATTACCA-C--CATTGTTTTGTAATC 180 Query 210 TCT-C-TATTG--CTTCTTCTTCTTCTCCATGTCGATGAAGAAATGTTTGAGATTTACAC 265 ||| | | ||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCTCCTTCTTGTTCTTGTTCTTCTTCTCCATGTCGATGAAGAAATGTTTGAGATTTACAC 240 Query 266 ACTCTGTTTCTCACTGTAACTCGGATGTTTTGAAGTGGTGATTGGAGTGGAAATGGAATT 325 ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 241 ACTCTGTTTCTTACTGTAACTCGGATGTTTTAAAGTGGTGATTGGAGTGGAAATGGAATT 300 Query 326 TGGTAAAGGAATTGATATGGAACAAAGCCCCAATAGTGTTCTTCCTCCTCCTCGTCCATT 385 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 301 TGGTAAAGGAATTGATATGGAACAAAGCCCCAACAGTGTTCTTCCTCCTCCTCGTCCATT 360 Query 386 CACTGAATCAGAAAAGAGGACTAGTACAAGACTAAAGCCGCCTCGTAGAGATGAGATATT 445 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 361 CACTGAATCAGAAAAGAGGACTAGTACAAGACTGAAGCCGCCTCGTAGAGATGAGATATT 420 Query 446 GAGAGTCAAAGAAGGTTTCACCGAGATAAGTTTCAGGCGTTACCGTAGCACATCATGTAA 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 421 GAGAGTCAAAGAAGGTTTCACCGAGATAAGTTTCAGGCGTTACCGTAGCACATCTTGTAA 480 Query 506 GAACTTTCCTTCTAAACCACTTGCAATGGGAGATACAACGGAGCTAAGGCGCGGTTCTGT 565 ||| |||||||||||| | |||||||||| ||||||||||||||||||||||||||||| Sbjct 481 GAATTTTCCTTCTAAATCTTTTGCAATGGGGGATACAACGGAGCTAAGGCGCGGTTCTGT 540 Query 566 TTATCAAAGCTCTAATGAGTTGTTTAAAGAACTTAGAGAACCACAAGGACGTAAAGATTC 625 |||||||||||||||| |||||||||||||||||||||||| || || ||||||||| | Sbjct 541 GTATCAAAGCTCTAATGCGTTGTTTAAAGAACTTAGAGAACCGCAGGGGCGTAAAGATAC 600 Query 626 AAAGGCGAAACTTGAGTTGTCTCGTAGTAGTGATGCTTCTTTCTCCTTTAGAGTTGTTGA 685 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 601 AAAAGCGAAACTTGAGTTGTCTCGTAGTAGTGATGCTTCTTTTTCCTTTAGAGTCGTTGA 660 Query 686 TTCTTCGAGGAAGGGAAGTACTGAGAAAAGACCGCATAAGACGGTTTTAGATGGTCAGAA 745 ||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| ||||| Sbjct 661 TTCTTCGAGGAAGAGAAGTACAGAGAAAAGAGCGCATAAGACGGTTTTAGATGGACAGAA 720 Query 746 GTCATTAGTTGAACCTTGCACCTCTAGCAACTTCATTGACATTTGTTTGAAGTCAGGTAT 805 ||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 721 GTCATCAGTTGAACCTAGCACCTCTAGCAACTTCATTGACATTTGTTTGAAATCAGGTAT 780 Query 806 TAAAGATAGAGCTGTAGTGTTGGATTCAGATGATAATGACCATAAGATTAGATTGCCTAA 865 |||||||||||| | ||||||||||||| |||| |||||| ||| |||||||||||||| Sbjct 781 TAAAGATAGAGCGGCGGTGTTGGATTCAGCTGATGATGACCGTAAAATTAGATTGCCTAA 840 Query 866 GCCAT-ATTCTGCAAAGGTAGACTCAGTAGAAACCAGTTACAATAAGGACAGCTCAAGAG 924 ||| | |||||||||||||||||||| |||||||||||| ||||||||| |||||||||| Sbjct 841 GCC-TCATTCTGCAAAGGTAGACTCATTAGAAACCAGTTGCAATAAGGAAAGCTCAAGAG 899 Query 925 TTAGGAAAATGTTTGATCCATTTGTTAAATCAAAATCTTTGAGAAGTCCTCTTGGTTATA 984 |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 900 TTAGGAAAATGTTTGATCCATTTGTTAAGTCAAAATCTCTGAGAAGTCCTCTTGGTTATA 959 Query 985 TAGGAGAATCAGGTGATCAGTTCAAATTGGGGAGGAACAGTGAGCGTTGCAGATCTATGT 1044 ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct 960 TAGGAGAATCAGGTGATCAGTTCAAGTTGGGGAGGAACAGTGAGCGTTGCAAATCTATGT 1019 Query 1045 TGAGTGACTACTCAAACATTCATAAAAGATCGAATCTTT--G--T--CCTCCTCCAGTTG 1098 ||||||||||||| || |||||||||||||| ||||||| | | ||||||||||||| Sbjct 1020 TGAGTGACTACTCGAATATTCATAAAAGATCAAATCTTTGCGCTTGCCCTCCTCCAGTTG 1079 Query 1099 TCAATAAGGATTATACCTCGGTGCTGAAATCTTCCCCGGTTCATCTACATTGCCGTCTCA 1158 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1080 TCAATAAGGATTATACTTCGGTGCTGAAATCTTCCCCGGTCCATCTACATTGCCGTCTCA 1139 Query 1159 AGATGGAAAGCAAGAATGGATTACCGGTTTTTCAGTTTGTTTCAGATTCTCCTGAGGAAG 1218 |||||||||||||||||||||| ||||||||||||||||| || || ||||||||||| | Sbjct 1140 AGATGGAAAGCAAGAATGGATTGCCGGTTTTTCAGTTTGTGTCCGACTCTCCTGAGGAGG 1199 Query 1219 TTTACGCTGCAAAGACGTGGAAATCTGACAATGGTTCTACTTGGGTATATACATTTTCAT 1278 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 TTTACGCCGCAAAGACGTGGAAATCTGACAATGGTTCTACTTGGGTATATACATTTTCAT 1259 Query 1279 CTGCTGGAAGCAGAAAGAGGAGCAGTGCTAGCGTGCGGGGTTTGACCGATGTTAGTAAAG 1338 |||||||||||||||| |||||||||||||| ||||||||||||| |||||||| ||||| Sbjct 1260 CTGCTGGAAGCAGAAAAAGGAGCAGTGCTAGTGTGCGGGGTTTGAACGATGTTACTAAAG 1319 Query 1339 AATCTTTGCTGGTGGCTCAGATGCAAGTTACCTGTAAGA-TGTGTTCAGAAGTAAGAAAA 1397 ||||||||||||||||||||||||||||| | ||||| | |||| | |||||||||||| Sbjct 1320 AATCTTTGCTGGTGGCTCAGATGCAAGTTTCTTGTAA-ATTGTGCACTGAAGTAAGAAAA 1378 Query 1398 AAGGGACAAGATCCAGAAACTTTGATGGTGAATGAGTTTGTTTTGTATGATATTGCACAA 1457 ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 1379 AAGGGACAAGATCCAGAAACTTTGATGGTAAATGAGTTTGTTTTGTTTGATATTGCACAA 1438 Query 1458 GCAAGAAGAAGTGTCTCCACAAAGGAAGATCAATCACTACCACTTGATACGGTTAATAAT 1517 |||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1439 GCAAGACGAAGTATCTCCACAAAGGAAGATCAATCACTACCACTTGATATGGTTAATAAT 1498 Query 1518 GCCTCCAAGAACTCTGTTAAATCAGACTCAGAGATAAGAAATAACTCAATGTCCGGGGAT 1577 |||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| Sbjct 1499 GCCTCCAAGAACTCTGCTAAACCAGACTCAGAGATAAGAAATAACTCAATGTCTGGGGAT 1558 Query 1578 GCTTCGGATACAATGAAGCAGAGATCTCAGCCTAAAAGAACATCTCAAAGCTATGATCTT 1637 |||| |||||| |||||||||||| |||||| | | | ||||||||||||||||||||| Sbjct 1559 ACTTCTGATACACTGAAGCAGAGATGTCAGCCGAGACGCACATCTCAAAGCTATGATCTT 1618 Query 1638 GAGGCTTCAAATGGAACAAACCCGTGGTCAGCTGCAAATTTGCATCCTGACCTTGAGATC 1697 |||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 1619 GAGGCTTCCAATGGAACAAACCCGTGGTCAGCTACAGATTTGCATCCTGACCTTGAGATC 1678 Query 1698 GCAGCTATAATTATTCAAGACACTATTGAGAAGAGAGAAAGCTTAAAATATAGAAGAGGT 1757 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1679 GCGGCTATAATTATTCAAGACACTATTGAGAAGAGAGAAAGCTTAAAATATAGAAGAGGT 1738 Query 1758 GACAAAAGACTGATGGAGAAAACTAATATTCTTGGTCTTTCTCCAATAGAAGAGGAGAAA 1817 |||||||| ||||||||||||||||| ||||||||||||||||||| || ||||||||| Sbjct 1739 GACAAAAGGTTGATGGAGAAAACTAATCTTCTTGGTCTTTCTCCAATTGAGGAGGAGAAA 1798 Query 1818 AAGGAGTTGTTTGGCAGCAGAAGTTTAGAAAAACTGAAGGTTGTAATCCCGAGGGGAAAC 1877 |||||||| | |||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 1799 AAGGAGTTATATGGCAGCAGAAGTTCAGAAAAACTGAAGGTTGTAATCCCAAGGGGAAAC 1858 Query 1878 CACGGGTTACCAACTACCGAAAACTCTTGTCCTTCGCCTTTGATTCAGCGATGGAGGTCA 1937 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1859 CACGGGTTACCAACTACCGAAAACTCTTGTCCCTCGCCTTTGATTCAGCGATGGAGGTCA 1918 Query 1938 GGAGGCGGTTGTGACTGTGGTGGTTGGGACATGGCTTGTCCACTTATGGTTCTTGGTAAT 1997 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 1919 GGAGGCGGTTGTGACTGTGGTGGTTGGGACATGGCTTGTCCACTTATGGTTATTGGAAAT 1978 Query 1998 CCTCGTATCTCATGTTCTCATGATCAGCCTCTTGTAGAAAATCAGCATCCTTTGCAACTA 2057 |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1979 CCTCGTATCTCATGTTCTCATGATCAGCCTCTTGTAGACAATCAACATCCTTTGCAACTA 2038 Query 2058 TTTGTCCAGGGTGCTAAAGAACATATACCAGCATTGTACATGTCATTTGTTGAGGAAGGA 2117 |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 2039 TTTGTCCAGGGTGCTAAAGAGCATATACCAGCTTTGTACATGTCATTTGTTGAGGAAGGG 2098 Query 2118 CAGTACGATGTTCATTTCCACGCGCAGTTATCAACATTGCAAGCATTCTCCATCTGTGTT 2177 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2099 CAATACGATGTTCATTTCCACGCGCAGTTATCAACATTGCAAGCATTCTCCATCTGTGTT 2158 Query 2178 GCCATATTACATAACACGGAAGTCTCAGATAGTTACAGAAATGGCGAGAATGTACAACAG 2237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2159 GCCATATTACATAACACGGAAGTCTCAGATAGTTACAGAAATGGCGAGAATGTACAACAG 2218 Query 2238 TTTTCGCATTGCAACTCGTTGAAAATGCTGATTGATGATGATGTTCAGTTCTTAGTTGAA 2297 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2219 TTATCGCATTGCAACTCGTTGAAAATGCTGATTGATGATGATGTTCAGTTCTTAGTTGAA 2278 Query 2298 GCAGTAACAGAGGAAGAAGAA--G-T---CCCTAAGCCTCTGAAAGAAGCTGTGACCGCT 2351 ||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| Sbjct 2279 GCAGTAACAGAGGAAGAAGAAAAGATAGTCCCTAAGCCTCTGAAAGAAGCTGTGACCGCT 2338 Query 2352 CTTCAATCCTACATGCCGAATCCTCCTTTCTCGCCAATCTCCCGAGTGTAGTCTGTGATG 2411 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2339 CTTCAATCCTACATGCCGAATCCTCCTTTCTCGCCAATCTCCCGAGTGTAGTCTGTG-TG 2397 Query 2412 CTATCACTA-TTGCAGGTGCATT-TGAGTTGGCGATAAGAAAAGAAGAGGAGAGAAGGTT 2469 || | | | || | || | ||||||||||||||||| || || |||||||||| Sbjct 2398 CTTTGAATTCTT-CTTTTGTGTCGTGAGTTGGCGATAAGAA--GA-GA--AGAGAAGGTT 2451 Query 2470 GGTCTCCAACTTCCCCGATAAAGCGCAACCATGAAGCAGTAGACTCGCCGGACAAGCTAG 2529 ||||| ||||||| |||| |||||||||||||||||||| ||| |||| ||||||| ||| Sbjct 2452 GGTCTTCAACTTCTCCGACAAAGCGCAACCATGAAGCAGCAGATTCGCGGGACAAGTTAG 2511 Query 2530 AGAGCTTAA-GATGGGATGGTCTCTGATTTTCAGACTGAGAAAGGAAGGCGTCACATTCT 2588 || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2512 AG--CTTAAAGATGGGATGGTCTCTGATTTTCAGACTGAGAAAGG----CGTCACATTCT 2565 Query 2589 TTGTTGTATCATTTATTTATTCTTCT---TAGGATCTAGGCAAAAGAAAAAGCCACACTG 2645 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 2566 TTGTTGTATCATTTATTTATTCTTCTGAGTAGGATCTAGGCAAAAGAAAAAGCCAAACTG 2625 Query 2646 TTCATATTGTAAGGTAGCAAGTGGGAGGTGCCTA-TTTGGTTAGAAGTCTTATGAGCGTA 2704 |||||||||||||||||||| ||||||||||| | |||||||||| ||||||| |||||| Sbjct 2626 TTCATATTGTAAGGTAGCAAATGGGAGGTGCCCAATTTGGTTAGAGGTCTTATAAGCGTA 2685 Query 2705 GAGTTGGTAGATCCTTCaaaaaaaaGTTTTGTAACTTGTAGTGAATAATGGATCTTCTTC 2764 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2686 GGGTTGGTAGATCCTT-AAAAAAAAGTTTTGTAACTTGTAGTGAATAATGGATCTTCTTC 2744 Query 2765 TTCTCTCTCCAGTC 2778 |||||||||||||| Sbjct 2745 TTCTCTCTCCAGTC 2758 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105129076200 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5