BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11450.1
Length=2786
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489973 jgi|Araly1|489973|fgenesh2_kg.6__3107__AT4G11450.1 4061 0.0
> Ahg489973 jgi|Araly1|489973|fgenesh2_kg.6__3107__AT4G11450.1
Length=2758
Score = 4061 bits (2199), Expect = 0.0
Identities = 2591/2774 (93%), Gaps = 51/2774 (2%)
Strand=Plus/Plus
Query 36 gagagagagagagagagagaTAGATTTTTGCACACTCG-AAGAGGGAAATAAAGAAACAA 94
|||||| || || | |||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct 5 GAGAGATAGTGACTGCGAGAGAGATTTTTGCACACTCGAAAGAGGGAAAAAAAGAAACAA 64
Query 95 AATGATGCCTTGATGG-AGAAAACTAATTGATTGC--ttttttttCTTCTCTATCTTTTT 151
||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||
Sbjct 65 AATGATGCCTTGA-GGAAGAAAACTAATTGATTGCTTTTTTTTTTCTTCTCTATCTTTTT 123
Query 152 GTTTACATTACAAAGAACATGATCGGTTTCTCTTATTACCACCTTCAGTGTTTTGTAA-- 209
||||||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct 124 GTTTACATTACAAAGAACATGATCGGTTTCTCTTATTACCA-C--CATTGTTTTGTAATC 180
Query 210 TCT-C-TATTG--CTTCTTCTTCTTCTCCATGTCGATGAAGAAATGTTTGAGATTTACAC 265
||| | | ||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCTCCTTCTTGTTCTTGTTCTTCTTCTCCATGTCGATGAAGAAATGTTTGAGATTTACAC 240
Query 266 ACTCTGTTTCTCACTGTAACTCGGATGTTTTGAAGTGGTGATTGGAGTGGAAATGGAATT 325
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 241 ACTCTGTTTCTTACTGTAACTCGGATGTTTTAAAGTGGTGATTGGAGTGGAAATGGAATT 300
Query 326 TGGTAAAGGAATTGATATGGAACAAAGCCCCAATAGTGTTCTTCCTCCTCCTCGTCCATT 385
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 TGGTAAAGGAATTGATATGGAACAAAGCCCCAACAGTGTTCTTCCTCCTCCTCGTCCATT 360
Query 386 CACTGAATCAGAAAAGAGGACTAGTACAAGACTAAAGCCGCCTCGTAGAGATGAGATATT 445
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 CACTGAATCAGAAAAGAGGACTAGTACAAGACTGAAGCCGCCTCGTAGAGATGAGATATT 420
Query 446 GAGAGTCAAAGAAGGTTTCACCGAGATAAGTTTCAGGCGTTACCGTAGCACATCATGTAA 505
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 GAGAGTCAAAGAAGGTTTCACCGAGATAAGTTTCAGGCGTTACCGTAGCACATCTTGTAA 480
Query 506 GAACTTTCCTTCTAAACCACTTGCAATGGGAGATACAACGGAGCTAAGGCGCGGTTCTGT 565
||| |||||||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 481 GAATTTTCCTTCTAAATCTTTTGCAATGGGGGATACAACGGAGCTAAGGCGCGGTTCTGT 540
Query 566 TTATCAAAGCTCTAATGAGTTGTTTAAAGAACTTAGAGAACCACAAGGACGTAAAGATTC 625
|||||||||||||||| |||||||||||||||||||||||| || || ||||||||| |
Sbjct 541 GTATCAAAGCTCTAATGCGTTGTTTAAAGAACTTAGAGAACCGCAGGGGCGTAAAGATAC 600
Query 626 AAAGGCGAAACTTGAGTTGTCTCGTAGTAGTGATGCTTCTTTCTCCTTTAGAGTTGTTGA 685
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 601 AAAAGCGAAACTTGAGTTGTCTCGTAGTAGTGATGCTTCTTTTTCCTTTAGAGTCGTTGA 660
Query 686 TTCTTCGAGGAAGGGAAGTACTGAGAAAAGACCGCATAAGACGGTTTTAGATGGTCAGAA 745
||||||||||||| ||||||| ||||||||| |||||||||||||||||||||| |||||
Sbjct 661 TTCTTCGAGGAAGAGAAGTACAGAGAAAAGAGCGCATAAGACGGTTTTAGATGGACAGAA 720
Query 746 GTCATTAGTTGAACCTTGCACCTCTAGCAACTTCATTGACATTTGTTTGAAGTCAGGTAT 805
||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 721 GTCATCAGTTGAACCTAGCACCTCTAGCAACTTCATTGACATTTGTTTGAAATCAGGTAT 780
Query 806 TAAAGATAGAGCTGTAGTGTTGGATTCAGATGATAATGACCATAAGATTAGATTGCCTAA 865
|||||||||||| | ||||||||||||| |||| |||||| ||| ||||||||||||||
Sbjct 781 TAAAGATAGAGCGGCGGTGTTGGATTCAGCTGATGATGACCGTAAAATTAGATTGCCTAA 840
Query 866 GCCAT-ATTCTGCAAAGGTAGACTCAGTAGAAACCAGTTACAATAAGGACAGCTCAAGAG 924
||| | |||||||||||||||||||| |||||||||||| ||||||||| ||||||||||
Sbjct 841 GCC-TCATTCTGCAAAGGTAGACTCATTAGAAACCAGTTGCAATAAGGAAAGCTCAAGAG 899
Query 925 TTAGGAAAATGTTTGATCCATTTGTTAAATCAAAATCTTTGAGAAGTCCTCTTGGTTATA 984
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 900 TTAGGAAAATGTTTGATCCATTTGTTAAGTCAAAATCTCTGAGAAGTCCTCTTGGTTATA 959
Query 985 TAGGAGAATCAGGTGATCAGTTCAAATTGGGGAGGAACAGTGAGCGTTGCAGATCTATGT 1044
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 960 TAGGAGAATCAGGTGATCAGTTCAAGTTGGGGAGGAACAGTGAGCGTTGCAAATCTATGT 1019
Query 1045 TGAGTGACTACTCAAACATTCATAAAAGATCGAATCTTT--G--T--CCTCCTCCAGTTG 1098
||||||||||||| || |||||||||||||| ||||||| | | |||||||||||||
Sbjct 1020 TGAGTGACTACTCGAATATTCATAAAAGATCAAATCTTTGCGCTTGCCCTCCTCCAGTTG 1079
Query 1099 TCAATAAGGATTATACCTCGGTGCTGAAATCTTCCCCGGTTCATCTACATTGCCGTCTCA 1158
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1080 TCAATAAGGATTATACTTCGGTGCTGAAATCTTCCCCGGTCCATCTACATTGCCGTCTCA 1139
Query 1159 AGATGGAAAGCAAGAATGGATTACCGGTTTTTCAGTTTGTTTCAGATTCTCCTGAGGAAG 1218
|||||||||||||||||||||| ||||||||||||||||| || || ||||||||||| |
Sbjct 1140 AGATGGAAAGCAAGAATGGATTGCCGGTTTTTCAGTTTGTGTCCGACTCTCCTGAGGAGG 1199
Query 1219 TTTACGCTGCAAAGACGTGGAAATCTGACAATGGTTCTACTTGGGTATATACATTTTCAT 1278
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTTACGCCGCAAAGACGTGGAAATCTGACAATGGTTCTACTTGGGTATATACATTTTCAT 1259
Query 1279 CTGCTGGAAGCAGAAAGAGGAGCAGTGCTAGCGTGCGGGGTTTGACCGATGTTAGTAAAG 1338
|||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |||||
Sbjct 1260 CTGCTGGAAGCAGAAAAAGGAGCAGTGCTAGTGTGCGGGGTTTGAACGATGTTACTAAAG 1319
Query 1339 AATCTTTGCTGGTGGCTCAGATGCAAGTTACCTGTAAGA-TGTGTTCAGAAGTAAGAAAA 1397
||||||||||||||||||||||||||||| | ||||| | |||| | ||||||||||||
Sbjct 1320 AATCTTTGCTGGTGGCTCAGATGCAAGTTTCTTGTAA-ATTGTGCACTGAAGTAAGAAAA 1378
Query 1398 AAGGGACAAGATCCAGAAACTTTGATGGTGAATGAGTTTGTTTTGTATGATATTGCACAA 1457
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1379 AAGGGACAAGATCCAGAAACTTTGATGGTAAATGAGTTTGTTTTGTTTGATATTGCACAA 1438
Query 1458 GCAAGAAGAAGTGTCTCCACAAAGGAAGATCAATCACTACCACTTGATACGGTTAATAAT 1517
|||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1439 GCAAGACGAAGTATCTCCACAAAGGAAGATCAATCACTACCACTTGATATGGTTAATAAT 1498
Query 1518 GCCTCCAAGAACTCTGTTAAATCAGACTCAGAGATAAGAAATAACTCAATGTCCGGGGAT 1577
|||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1499 GCCTCCAAGAACTCTGCTAAACCAGACTCAGAGATAAGAAATAACTCAATGTCTGGGGAT 1558
Query 1578 GCTTCGGATACAATGAAGCAGAGATCTCAGCCTAAAAGAACATCTCAAAGCTATGATCTT 1637
|||| |||||| |||||||||||| |||||| | | | |||||||||||||||||||||
Sbjct 1559 ACTTCTGATACACTGAAGCAGAGATGTCAGCCGAGACGCACATCTCAAAGCTATGATCTT 1618
Query 1638 GAGGCTTCAAATGGAACAAACCCGTGGTCAGCTGCAAATTTGCATCCTGACCTTGAGATC 1697
|||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1619 GAGGCTTCCAATGGAACAAACCCGTGGTCAGCTACAGATTTGCATCCTGACCTTGAGATC 1678
Query 1698 GCAGCTATAATTATTCAAGACACTATTGAGAAGAGAGAAAGCTTAAAATATAGAAGAGGT 1757
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 GCGGCTATAATTATTCAAGACACTATTGAGAAGAGAGAAAGCTTAAAATATAGAAGAGGT 1738
Query 1758 GACAAAAGACTGATGGAGAAAACTAATATTCTTGGTCTTTCTCCAATAGAAGAGGAGAAA 1817
|||||||| ||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 1739 GACAAAAGGTTGATGGAGAAAACTAATCTTCTTGGTCTTTCTCCAATTGAGGAGGAGAAA 1798
Query 1818 AAGGAGTTGTTTGGCAGCAGAAGTTTAGAAAAACTGAAGGTTGTAATCCCGAGGGGAAAC 1877
|||||||| | |||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1799 AAGGAGTTATATGGCAGCAGAAGTTCAGAAAAACTGAAGGTTGTAATCCCAAGGGGAAAC 1858
Query 1878 CACGGGTTACCAACTACCGAAAACTCTTGTCCTTCGCCTTTGATTCAGCGATGGAGGTCA 1937
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1859 CACGGGTTACCAACTACCGAAAACTCTTGTCCCTCGCCTTTGATTCAGCGATGGAGGTCA 1918
Query 1938 GGAGGCGGTTGTGACTGTGGTGGTTGGGACATGGCTTGTCCACTTATGGTTCTTGGTAAT 1997
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1919 GGAGGCGGTTGTGACTGTGGTGGTTGGGACATGGCTTGTCCACTTATGGTTATTGGAAAT 1978
Query 1998 CCTCGTATCTCATGTTCTCATGATCAGCCTCTTGTAGAAAATCAGCATCCTTTGCAACTA 2057
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1979 CCTCGTATCTCATGTTCTCATGATCAGCCTCTTGTAGACAATCAACATCCTTTGCAACTA 2038
Query 2058 TTTGTCCAGGGTGCTAAAGAACATATACCAGCATTGTACATGTCATTTGTTGAGGAAGGA 2117
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2039 TTTGTCCAGGGTGCTAAAGAGCATATACCAGCTTTGTACATGTCATTTGTTGAGGAAGGG 2098
Query 2118 CAGTACGATGTTCATTTCCACGCGCAGTTATCAACATTGCAAGCATTCTCCATCTGTGTT 2177
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 CAATACGATGTTCATTTCCACGCGCAGTTATCAACATTGCAAGCATTCTCCATCTGTGTT 2158
Query 2178 GCCATATTACATAACACGGAAGTCTCAGATAGTTACAGAAATGGCGAGAATGTACAACAG 2237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2159 GCCATATTACATAACACGGAAGTCTCAGATAGTTACAGAAATGGCGAGAATGTACAACAG 2218
Query 2238 TTTTCGCATTGCAACTCGTTGAAAATGCTGATTGATGATGATGTTCAGTTCTTAGTTGAA 2297
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 TTATCGCATTGCAACTCGTTGAAAATGCTGATTGATGATGATGTTCAGTTCTTAGTTGAA 2278
Query 2298 GCAGTAACAGAGGAAGAAGAA--G-T---CCCTAAGCCTCTGAAAGAAGCTGTGACCGCT 2351
||||||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 2279 GCAGTAACAGAGGAAGAAGAAAAGATAGTCCCTAAGCCTCTGAAAGAAGCTGTGACCGCT 2338
Query 2352 CTTCAATCCTACATGCCGAATCCTCCTTTCTCGCCAATCTCCCGAGTGTAGTCTGTGATG 2411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2339 CTTCAATCCTACATGCCGAATCCTCCTTTCTCGCCAATCTCCCGAGTGTAGTCTGTG-TG 2397
Query 2412 CTATCACTA-TTGCAGGTGCATT-TGAGTTGGCGATAAGAAAAGAAGAGGAGAGAAGGTT 2469
|| | | | || | || | ||||||||||||||||| || || ||||||||||
Sbjct 2398 CTTTGAATTCTT-CTTTTGTGTCGTGAGTTGGCGATAAGAA--GA-GA--AGAGAAGGTT 2451
Query 2470 GGTCTCCAACTTCCCCGATAAAGCGCAACCATGAAGCAGTAGACTCGCCGGACAAGCTAG 2529
||||| ||||||| |||| |||||||||||||||||||| ||| |||| ||||||| |||
Sbjct 2452 GGTCTTCAACTTCTCCGACAAAGCGCAACCATGAAGCAGCAGATTCGCGGGACAAGTTAG 2511
Query 2530 AGAGCTTAA-GATGGGATGGTCTCTGATTTTCAGACTGAGAAAGGAAGGCGTCACATTCT 2588
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2512 AG--CTTAAAGATGGGATGGTCTCTGATTTTCAGACTGAGAAAGG----CGTCACATTCT 2565
Query 2589 TTGTTGTATCATTTATTTATTCTTCT---TAGGATCTAGGCAAAAGAAAAAGCCACACTG 2645
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 2566 TTGTTGTATCATTTATTTATTCTTCTGAGTAGGATCTAGGCAAAAGAAAAAGCCAAACTG 2625
Query 2646 TTCATATTGTAAGGTAGCAAGTGGGAGGTGCCTA-TTTGGTTAGAAGTCTTATGAGCGTA 2704
|||||||||||||||||||| ||||||||||| | |||||||||| ||||||| ||||||
Sbjct 2626 TTCATATTGTAAGGTAGCAAATGGGAGGTGCCCAATTTGGTTAGAGGTCTTATAAGCGTA 2685
Query 2705 GAGTTGGTAGATCCTTCaaaaaaaaGTTTTGTAACTTGTAGTGAATAATGGATCTTCTTC 2764
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2686 GGGTTGGTAGATCCTT-AAAAAAAAGTTTTGTAACTTGTAGTGAATAATGGATCTTCTTC 2744
Query 2765 TTCTCTCTCCAGTC 2778
||||||||||||||
Sbjct 2745 TTCTCTCTCCAGTC 2758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105129076200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5