BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11460.1
Length=2103
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489974 jgi|Araly1|489974|fgenesh2_kg.6__3108__AT4G11460.1 3013 0.0
Ahg895321 jgi|Araly1|895321|Al_scaffold_0006_3317 889 0.0
Ahg489975 jgi|Araly1|489975|fgenesh2_kg.6__3109__AT4G11480.1 730 0.0
> Ahg489974 jgi|Araly1|489974|fgenesh2_kg.6__3108__AT4G11460.1
Length=2016
Score = 3013 bits (1631), Expect = 0.0
Identities = 1901/2029 (94%), Gaps = 28/2029 (1%)
Strand=Plus/Plus
Query 1 ATGCGTCAAAATAATCTCTTCTCATTGATCTTCTGGCTTGTCCCTGTGAGCTTAATTATT 60
||| ||| ||| ||| | ||||||||| |||||||| ||||| | |||||||||||| ||
Sbjct 1 ATGTGTCGAAAGAATTTGTTCTCATTGGTCTTCTGGGTTGTCTCGGTGAGCTTAATTGTT 60
Query 61 GTTGTCTCTGCACAGTTATGCTCGGAGAAGTTTGGAACTTTTACACCAGGTGGTACATTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTGTCTCTGCACAGTTATGCTCGGAGAAGTTTGGAACTTTTACACCAGGTGGTACATTT 120
Query 121 GACAAGAACCGCCGAATCATTCTCTCATCTCTTCCATCTGAAGTCACAGCTCAAGATGGC 180
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACAGGAACCGCCGACTCATTCTCTCATCTCTTCCATCTGAAGTCACAGCTCAAGATGGC 180
Query 181 TTCTACAACGCTTCGATTGGAACAGATCCTGACCAACTCTACGCAATGGGGATGTGCATC 240
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 TTCTCCAACGCTTCGATTGGAACAGATCCTGACCAACTCTACGCGATGGGGATGTGCATC 240
Query 241 CCAGGTGCTAAACAAAAGCTTTGTAGGGATTGTATCATGGACGTCACAAGACA-GTTAAT 299
||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||||||
Sbjct 241 CCAGGTGCTAAACAAAAGCTTTGTAGGGATTGTATGAAGGACGTCACAAGA-ATGTTAAT 299
Query 300 ACAGACATGTCCCAACCAGACAGCAGCAATTCACTGGTCAGGTGGAGGGAAAACTGTATG 359
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACAGACATGTCCCAACCAGATAGCAGCAATTCACTGGTCAGGTGGAGGGAAAACTGTATT 359
Query 360 TATGGCACGTTACTATAACCAGCCGTCTTCTAGACCATTGGATTTGGAATCAGTTTCTAT 419
||||||||| |||||||||| ||||||||||||||||||||||||||| |||||| ||||
Sbjct 360 TATGGCACGCTACTATAACCGGCCGTCTTCTAGACCATTGGATTTGGATTCAGTTGCTAT 419
Query 420 TGGTTATAACGTTGGAAATCTCAGCACAAACTTAACAGATTTTGATAGATTATGGGAGCG 479
||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 420 TGGTTATAACGATGGAAATCTCAGAACAAATTTAACAGATTTTGATAGATTGTGGGAGCG 479
Query 480 ATTGA-TAGCTCATATGGTGACTAAAGCTTCATCAGCATCAATAAAATATTTATCATTTG 538
|| | ||| ||||||||||||||||||||| ||| |||||||||||||||||||||| |
Sbjct 480 GTT-AGTAGTTCATATGGTGACTAAAGCTTCGTCATCATCAATAAAATATTTATCATTCG 538
Query 539 ATAACAGTAGATTCTATGCAGCTGATGAAACAAACTTGACAAATTCTCAAATGGTCTACG 598
||||||||||||||||||||||||||||| |||||||||||| || ||||||| ||||||
Sbjct 539 ATAACAGTAGATTCTATGCAGCTGATGAAGCAAACTTGACAAGTTTTCAAATGATCTACG 598
Query 599 CTTTGATGCAATGCACGCCAGACGTCTCTCCTTCCAACTGTAACACTTGTTTAAAACAAA 658
| || ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 599 CCTTAATGCAATGCACGCCAGACGTCTCTCCTTCCAACTGTAACACCTGTTTAAAACGAA 658
Query 659 GTGTTGATGACTATGTTGGTTGTTGTCATGGGAAGCAAGGCGGCTATGTGTATCGGCCTA 718
|||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 659 GTGTTGGTGACTATGTGGGTTGCTGTCATGGGAAGCAAGGCGGCTATGTGTATCGGCCTA 718
Query 719 GTTGCATTTTCCGGTGGGATCTATACCCTTTCAATGGCGCCTTTGATCTTCTTACGCTAG 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATTGCATTTTCCGGTGGGATCTATACCCTTTCAATGGCGCCTTTGATCTTCTTACGCTAG 778
Query 779 CGCCTCCACCCTCATCTCAGCTGCAATCCCCACCTCCAGTGACCAACAAAGATGAAAAAA 838
||||||||||||||||||||||| |||| |||||||| |||||| ||||||||| |||
Sbjct 779 CGCCTCCACCCTCATCTCAGCTGGAATCTCCACCTCCCCAGACCAAAAAAGATGAAGAAA 838
Query 839 CGATTCATACAGGAACTATCATTGGGATTGTCATTGTCGTTGCAATGGTCATAATCATGG 898
|||||||| |||||| || |||||| | ||||||||||||| ||||||||||||||
Sbjct 839 CGATTCATCCAGGAATTACCATTGG-A-----ATTGTCGTTGCAACGGTCATAATCATGG 892
Query 899 CTCTGCTTGCTCTAGGGGTTTCTGTTTGCAGGAGTAGaaaaaaaTATCAAGCTTTTGCCT 958
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 893 CTCTGCTTGCTCTAGGGGTTGCTGTTTGCAGGAGTAGAAAAAAATATCAAGCTTTTGCCT 952
Query 959 CAGAAACTGCCGATGATATTACAACAGTTGGATATCTCCAGTTTGATATTAAAGACATTG 1018
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 953 CAGAAACTGCCGATGATATTACAACTGTCGGATATCTTCAGTTTGATATTAAAGACATTG 1012
Query 1019 AAGCTGCAACAAGTAACTTTTTGGCGAGTAACAAGATTGGTCAAGGTGGTTTCGGCGAAG 1078
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AAGCTGCAACTAGTAACTTTTTGGCGAGTAACAAGATTGGTCAAGGTGGTTTCGGCGAAG 1072
Query 1079 TTTACAAGGGTACGTTATCAAATGGAACTGAAGTTGCAGTCAAGAGGCTGTCAAGAACTT 1138
| || | || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1073 GT-AC-------C-TTCTCAAATGGAACTGAAGTTGCAGTTAAGAGGCTGTCAAGAACTT 1123
Query 1139 CAGATCAAGGTGAATTGGAGTTCAAGAACGAGGTGCTTCTTGTAGCAAAACTTCAGCACC 1198
|||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| ||
Sbjct 1124 CAGATCAAGGTGAACTGGAGTTCAAGAACGAGGTGCTTCTGGTAGCAAAGCTTCAGCCCC 1183
Query 1199 GGAATCTCGTTAGGCTTCTCGGTTTTGCTCTGCAAGGAGAAGAAAAGATACTCGTCTTTG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 GGAATCTCGTTAGGCTTCTCGGTTTTGCTCTGCAAGGAGAAGAAAAGATACTCGTCTTTG 1243
Query 1259 AGTTTGTTCCCAACAAGAGCCTCGATTATTTCCTCTTCGGTAGTACTAACCCAACAAAAA 1318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1244 AGTTTGTTCCCAACAAGAGCCTCGATTATTTCCTCTTCGGTAGTACTAACCCAACAAAGA 1303
Query 1319 AGGGTCAGCTGGACTGGACAAGACGGTACAACATCATTGGAGGGATTACACGAGGGCTTC 1378
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||
Sbjct 1304 AGGGTCAGCTGGACTGGACAAGATGGTACAACATCATCGGAGGGATTACACGAGGGATTC 1363
Query 1379 TCTATCTTCATCAAGACTCTAGGCTCACCATCATACACCGTGACATCAAAGCGAGTAACA 1438
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 TCTATCTTCATCAAGACTCGAGGCTCACCATCATACACCGTGACATCAAAGCGAGTAACA 1423
Query 1439 TTCTTTTAGATGCTGATATGAACCCGAAAATAGCGGATTTCGGGATGGCTAGGAATTTCA 1498
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1424 TTCTTTTAGATGCCAATATGAACCCGAAAATAGCGGATTTCGAAATGGCTAGGAATTTCA 1483
Query 1499 GAGATCATCAAACTGAAGACAGTACAGGAAGAGTCGTTGGAACCTTCGGTTACATGCCTC 1558
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1484 GAGATCATCAAACTGAAGACAGTACAGGAAGAGTTGTTGGAACCTTCGGTTACATGCCTC 1543
Query 1559 CAGAATATGTTG-CGCATGGCCAATTCTCTACCAAATCCGATGTCTATAGCTTCGGAGTA 1617
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 CAGAATATGT-GACGCATGGCCAATTCTCTACCAAATCCGATGTCTATAGCTTCGGAGTA 1602
Query 1618 TTGATTCTAGAGATTGTTAGTGGCAGGAAGAATAGCAGCTTCTATCAGATGGATGGTTCT 1677
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 TTGATTCTGGAGATTGTTAGTGGCAGGAAGAATAGCAGCTTCTATCAGATGGATGGTTCT 1662
Query 1678 GTTTGCAACTTGGTCACATATGTTTGGAGACTTTGGAACACTGATTCATCTTTAGAGCTC 1737
||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct 1663 GTTTGCAACTTGGTCACATATGTTTGGAGACTTTGGAACACTGATACATCCTTGGAGCTC 1722
Query 1738 GTAGATCCGGCGATTAGCGGAA-GCTATGAGAAAGATGAAGTCACTAGATGCATCCATAT 1796
|||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 1723 ATAGATCCGGCGATTAG-GGAAAGTTATGAGAAAGATGAAGTCACTAGATGCATCCATAT 1781
Query 1797 CGGACTTTTATGCGTTCAAGAAAATCCTGTGAATCGACCAGC-ATTGTCTACAATATTCC 1855
||||||||||||||||||||||||||||| ||||| ||||| || ||||||| ||||||
Sbjct 1782 CGGACTTTTATGCGTTCAAGAAAATCCTGCAAATCGCCCAGCTAT-GTCTACAGTATTCC 1840
Query 1856 AAATGCTCACTAATAGCTCCATTACTCTAAATGTCCCTCAACCACCTGGATTTTTCTTCA 1915
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1841 AGATGCTCACCAATAGCTCCATTACTCTAAATGTCCCTCAACCACCTGGATTTTTCTTCA 1900
Query 1916 GGAACAGACCTGAGTCAGACACATTACGCCGTGGATTGGAGCCAG-ACCAATATAACAAT 1974
|||||||||| || || ||||||||| |||| || |||||| || ||||||||||||
Sbjct 1901 GGAACAGACCCGAATCGGACACATTAAGCCGCAGAGTGGAGC-AGGACCAATATAACACC 1959
Query 1975 GAATCTGTTACTTGTTCTATCGACAATGCAACAATCACTACACTC-CTC 2022
||||||||||||||||||||||| ||||||| |||||||||||| |||
Sbjct 1960 AAATCTGTTACTTGTTCTATCGACGATGCAACGATCACTACACTCACTC 2008
> Ahg895321 jgi|Araly1|895321|Al_scaffold_0006_3317
Length=1971
Score = 889 bits (481), Expect = 0.0
Identities = 872/1055 (83%), Gaps = 49/1055 (5%)
Strand=Plus/Plus
Query 993 TCTCCAGTTTGATATT-AAAGACATTGAAGCTGCAACAAG-TAACTTTTTG-GCGAGTAA 1049
||| || |||||| || || | |||||||| ||||| || ||| |||| | | || ||
Sbjct 942 TCTGCAATTTGATTTTGCAACA-ATTGAAGCGGCAAC-AGATAAGTTTTCGAG-GAACAA 998
Query 1050 CAAGATTGGTCAAGGTGGTTTCGGCGAAGTTTACAAGGGTACGTTATCAAATGGAACTGA 1109
|||| | || ||||| || ||||| |||||||||||||| | |||| |||||| ||| ||
Sbjct 999 CAAGCTAGGACAAGGCGGATTCGGTGAAGTTTACAAGGGAATGTTACCAAATGAAACAGA 1058
Query 1110 AGTTGCAGTCAAGAGGCTGTCAAGAACTTCA-GATCAAGGTGA-ATTGGAGTTCAAGAAC 1167
| |||| || ||| |||| ||||||| |||| || ||||| | | ||||||||||||
Sbjct 1059 AATTGCGGTAAAGCGGCTATCAAGAAATTCAGGA-CAAGG-CACACAAGAGTTCAAGAAC 1116
Query 1168 GAGG-TGCTTCTTGTAGCAAAACTTCAGCACCGGAATCTCGTTAGGCTTC-TCGGTTTTG 1225
|||| || | |||| || |||||||| ||| |||||| |||||||||| | |||||||
Sbjct 1117 GAGGTTG-TGATTGTGGCTAAACTTCAACACAAGAATCTTGTTAGGCTTCTTGGGTTTTG 1175
Query 1226 CTCT-GCAAGGAGAAGAAAAGATACTCGTCTTTGAGTTTGTTCCCAACAAGAGCCTCGAT 1284
|| | | || |||| ||| ||||||| |||| ||||||||||||||||||||||| |||
Sbjct 1176 CT-TAG-AAAGAGATGAACAGATACTTGTCTACGAGTTTGTTCCCAACAAGAGCCTTGAT 1233
Query 1285 TATTTCCTCTTCGGTAGTACTAACCCAACAAAAAAGGGTCAGCTGGACTGGACAAGACGG 1344
||||||||||| | | | | |||||||| ||| |||||| || |||| |||||||
Sbjct 1234 TATTTCCTCTT---T-G-A-T---CCAACAAAGAAGACTCAGCTAGATTGGAAAAGACGG 1284
Query 1345 TACAACATCATTGGAGGGATTACACGAGGGCTTCTCTATCTTCATCAAGACTCTAGGCTC 1404
||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| || |||
Sbjct 1285 TACAACATCATAGGAGGGATTACGCGAGGGCTTCTATATCTTCATCAAGACTCAAGACTC 1344
Query 1405 ACCATCATACACCGTGACATCAAAGCGAGTAACATTCTTTTAGATGCTGATATGAACCCG 1464
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1345 ACCATCATACACCGTGACATCAAAGCAAGTAACATTCTTTTAGATGCCGATATGAACCCT 1404
Query 1465 AAAATAGCGGATTTCGGGATGGCTAGGAATTTCAGAGAT-CATCAAACTGAAGACAGTAC 1523
|||||||| |||||||| ||||| ||||||||||||| | | ||||||||||| | |||
Sbjct 1405 AAAATAGCAGATTTCGGAATGGCAAGGAATTTCAGAG-TGGACCAAACTGAAGAAAATAC 1463
Query 1524 AGGAAGAGTCGTTGGAACCTTCGGTTACATGCCTCCAGAATATGTTG-CGCATGGCCAAT 1582
||| ||||| |||||||| ||||||||||||||||||||||||| || ||||||||||||
Sbjct 1464 AGGCAGAGTTGTTGGAACATTCGGTTACATGCCTCCAGAATATG-TGACGCATGGCCAAT 1522
Query 1583 TCTCTACCAAATCCGATGTCTATAGCTTCGGAGTATTGATTCTAGAGATTGTTAGTGGCA 1642
||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||
Sbjct 1523 TCTCTACCAAATCCGATGTCTATAGCTTCGGAGTATTGATTCTGGAGATTATTTGTGGCA 1582
Query 1643 GGAAGAATAGCAGCTTCTATCAGATGGATGGTTCTGTTTGCAACTTGGTCACATATGTTT 1702
||||||||||||||||||||||||||||| ||||| | || ||||| ||| ||||||
Sbjct 1583 AGAAGAATAGCAGCTTCTATCAGATGGATGATTCTGGGGGAAATTTGGTGACACATGTTT 1642
Query 1703 GGAGACTTTGGAACACTGATTCATCTTTAGAGCTCGTAGATCCGGCGATTAGCGGAA-GC 1761
|||| |||||||||| ||||||| ||||||| ||| | || || |||||||| |||| ||
Sbjct 1643 GGAGGCTTTGGAACAATGATTCACCTTTAGATCTCATCGACCCTGCGATTAG-GGAAAGC 1701
Query 1762 TATGAGAAAGATGAAGTCACTAGATGCATCCATATCGGACTTTTATGCGTTCAAGAAAAT 1821
|| || || |||||||||| |||||| |||||||||||| ||||||| |||||||||| |
Sbjct 1702 TACGATAATGATGAAGTCATTAGATGTATCCATATCGGAATTTTATGTGTTCAAGAAACT 1761
Query 1822 CCTG-TGAATCGACC--AGCATTGTCTACAATATTCCAAATGCTCACTAATAGCTCCATT 1878
|| | ||| ||| || || || |||||||| || |||||||| || ||||||||||||
Sbjct 1762 CCCGCTGA-TCGTCCGGAG-AT-GTCTACAACCTTTCAAATGCTTACGAATAGCTCCATT 1818
Query 1879 ACTCTAAATGTCCCTCAACCACCTGGATTTTTCTTCAGGAACAGACCTGAGTCAGACACA 1938
||||| ||| |||| |||||||||||||||||||||||||| || | | |||| |
Sbjct 1819 ACTCTGCCTGTGCCTCGCCCACCTGGATTTTTCTTCAGGAACAGGCCCAATTTAGACCCT 1878
Query 1939 TTA-CGCCGTGGATTGGAGCCAGACCAAT--AT-AACAATGAATCTGTTACTTGTTCTAT 1994
||| | ||||| ||||||| |||| | |||| || |||||| ||| ||||||
Sbjct 1879 TTAACTTA-TGGATCCGAGCCAGGGCAATCCAGCAACA-TG--TCTGTTCCTTATTCTAT 1934
Query 1995 CGACAATGCAACAATCACTA----CACTCCTCGGT 2025
|| | ||| ||||||||| |||||||||||
Sbjct 1935 AGATAGTGCGTCAATCACTAGAGTCACTCCTCGGT 1969
> Ahg489975 jgi|Araly1|489975|fgenesh2_kg.6__3109__AT4G11480.1
Length=1881
Score = 730 bits (395), Expect = 0.0
Identities = 742/906 (82%), Gaps = 37/906 (4%)
Strand=Plus/Plus
Query 993 TCTCCAGTTTGATATTAAAGA-CATTGAAGCTGCAACAAG-TAACTTTTTGGCGAGTAAC 1050
||| || |||||| || | || | | ||||| ||||| | ||| |||| || || ||||
Sbjct 921 TCTGCAATTTGAT-TTTATGACCCTCGAAGCGGCAAC-TGATAAATTTTCGGGGAATAAC 978
Query 1051 AAGATTGGTCAAGGTGGTTTCGGCGAAGTTTACAAGGGTACGTTATCAAATGGAACTGAA 1110
||| | ||||||||||| ||||||||| ||| ||||| | ||| ||||| ||| |||
Sbjct 979 AAGCTAGGTCAAGGTGGATTCGGCGAAATTTTTAAGGGAATATTACCAAATCAAACAGAA 1038
Query 1111 GTTGCAGTCAAGAGGCTGTCAAGAACTTCA-GATCAAGGTGA-ATTGGAGTTCAAGAACG 1168
||||| || ||| |||| || | || |||| || ||||| | | |||||||||||||
Sbjct 1039 GTTGCGGTGAAGCGGCTATCGATAAATTCAGGA-CAAGG-CACACAAGAGTTCAAGAACG 1096
Query 1169 AGG-TGCTTCTTGTAGCAAAACTTCAGCACCGGAATCTCGTTAGGCTTC-TCGGTTTTGC 1226
||| || | |||| || || ||||| ||| ||||||| |||||||||| | ||||||||
Sbjct 1097 AGGTTG-TAATTGTGGCTAAGCTTCAACACAGGAATCTTGTTAGGCTTCTTGGGTTTTGC 1155
Query 1227 TCT-GCAAGGAGAAGAAAAGATACTCGTCTTTGAGTTTGTTCCCAACAAGAGCCTCGATT 1285
| | | || || | ||| ||||||| |||| ||||||||| ||||||||||||| | |
Sbjct 1156 T-TAG-AAAGATATGAACAGATACTTGTCTACGAGTTTGTTTCCAACAAGAGCCTTAACT 1213
Query 1286 ATTTCCTCTTCGGTAGTACTAACCCAACAAAAAAGGGTCAGCTGGACTGGACAAGACGGT 1345
|||||||||| | | | | |||||||| ||| ||||||| || |||| || ||| |
Sbjct 1214 ATTTCCTCTT---T-G-A-T---CCAACAAAGAAGAGTCAGCTAGATTGGAAAATACGAT 1264
Query 1346 ACAACATCATTGGAGGGATTACACGAGGGCTTCTCTATCTTCATCAAGACTCTAGGCTCA 1405
||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1265 ACAGCATCATTGGAGGGATTACGCGAGGGCTTCTCTATCTTCATCAAGACTCGCGGCTCA 1324
Query 1406 CCATCATACACCGTGACATCAAAGCGAGTAACATTCTTTTAGATGCTGATATGAACCCGA 1465
|||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct 1325 CCATTATACACCGTGACATCAAAGCAAGTAACATTCTTTTAGATGCCGATATGAACCCTA 1384
Query 1466 AAATAGCGGATTTCGGGATGGCTAGGAATTTCAGAGATC-ATCAAACTGAAGACAGTACA 1524
|||||||||||||||| || || || ||||| || | | | ||||||||||||| ||||
Sbjct 1385 AAATAGCGGATTTCGGAATCGCAAGAAATTTTAGCG-TGGACCAAACTGAAGACAATACA 1443
Query 1525 GGAAGAGTCGTTGGAACCTTCGGTTACATGCCTCCAGAATATGTTG-CGCATGGCCAATT 1583
|||||||| |||||||| |||||||||||||||||||| ||||| | |||| ||||||||
Sbjct 1444 GGAAGAGTTGTTGGAACATTCGGTTACATGCCTCCAGAGTATGT-GACGCACGGCCAATT 1502
Query 1584 CTCTACCAAATCCGATGTCTATAGCTTCGGAGTATTGATTCTAGAGATTGTTAGTGGCAG 1643
|||||||||||| ||||| |||||||| |||||||||||||| |||||| || ||||||
Sbjct 1503 CTCTACCAAATCTGATGTTTATAGCTTTGGAGTATTGATTCTGGAGATTATTTGTGGCAA 1562
Query 1644 GAAGAATAGCAGCTTCTATCAGATGGATGGTTCTGTTTGCAACTTGGTCACATATGTTTG 1703
|||||||||||||||||| ||||||| || ||||| | |||| ||||| ||| |||||||
Sbjct 1563 GAAGAATAGCAGCTTCTACCAGATGGCTGATTCTGGTGGCAATTTGGTGACACATGTTTG 1622
Query 1704 GAGACTTTGGAACA-CTGATTCATCTTTAGAGCTCGTAGATCCGGCGATTAGCGGAA-GC 1761
||| |||||||||| | | |||| | ||||| ||| |||| || ||||||| |||| ||
Sbjct 1623 GAGGCTTTGGAACAAC-GCTTCACCCTTAGATCTCATAGACCCCGCGATTAA-GGAAAGC 1680
Query 1762 TATGAGAAAGATGAAGTCACTAGATGCATCCATATCGGACTTTTATGCGTTCAAGAAAAT 1821
|| || || |||| ||||| |||||| || ||||||||| ||||||| |||||||||| |
Sbjct 1681 TACGATAATGATGTAGTCATTAGATGTATACATATCGGAATTTTATGTGTTCAAGAAACT 1740
Query 1822 CCTGT-GAATCGACC--AGCATTGTCTACAATATTCCAAATGCTCACTAATAGCTCCATT 1878
|| | || ||| || || || |||||| || || |||||||| || ||||||| ||||
Sbjct 1741 CCGGCAGA-TCGTCCGGAG-AT-GTCTACGATCTTTCAAATGCTTACAAATAGCTTCATT 1797
Query 1879 ACTCTA 1884
||||||
Sbjct 1798 ACTCTA 1803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79113438865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5