BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11470.1
Length=2001
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895321 jgi|Araly1|895321|Al_scaffold_0006_3317 2394 0.0
Ahg489975 jgi|Araly1|489975|fgenesh2_kg.6__3109__AT4G11480.1 1336 0.0
Ahg895324 jgi|Araly1|895324|Al_scaffold_0006_3320 756 0.0
Ahg489974 jgi|Araly1|489974|fgenesh2_kg.6__3108__AT4G11460.1 736 0.0
> Ahg895321 jgi|Araly1|895321|Al_scaffold_0006_3317
Length=1971
Score = 2394 bits (1296), Expect = 0.0
Identities = 1792/2022 (89%), Gaps = 72/2022 (4%)
Strand=Plus/Plus
Query 1 ATGTGTT-TGAACACTCTCTGTGCAATCCTCTGTTTTGTCCTT-A-CCGTTAGTTTCGGC 57
|||| || |||||| || | | |||| ||||||||| | ||| | || ||||||||||
Sbjct 1 ATGT-TTCTGAACAAACTTTTTTCAATGCTCTGTTTTAT-CTTCATCC-TTAGTTTCGGT 57
Query 58 TTCGTCTCTGCCCAAAAATGCGGGGAGTCTGTGTTTTTCAGACCTAACGGTAAC-TATGA 116
|| |||||||| |||||||| || ||||| ||||||||||||| || ||| || |||||
Sbjct 58 TTTGTCTCTGCACAAAAATGTGGAGAGTCAATGTTTTTCAGACCAAATGGT-ACTTATGA 116
Query 117 CACTAACCGTCGTCTCGTTCTATCAACGT-TAGCTTCCAACGTCAGTTCTCAAAACAACC 175
||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 117 CACTAACCGTCGTCTCGTTCTCTCAAC-TCTAGCTTCCAACGTCAGTTCTCAAAACAACC 175
Query 176 GCTTCTACAACGTTTCGGTCGGTGAAGGAGC-TGGAAGAATCTATGCCTTAGGTCTCTGT 234
||||||||||||| || |||||||||||||| ||| || |||||||| ||||| ||||||
Sbjct 176 GCTTCTACAACGTCTCAGTCGGTGAAGGAGCTTGG-AGGATCTATGCTTTAGGCCTCTGT 234
Query 235 ATCCCAGGGTCTGATCCAAGGGTGTGTTCCGATTGTATCCAACTCGCGTCTCAAGGTTTA 294
||||||||| ||||||||| ||| ||| |||| |||||||||||||| || ||||||||
Sbjct 235 ATCCCAGGGACTGATCCAAAGGTCTGTGCCGACTGTATCCAACTCGCATCAGAAGGTTTA 294
Query 295 TTACAAACCTGTCCGAACCAGACCGACTCATTCTACTGGACAGGCGACAACGCCGACAAG 354
||||||| ||||||||||||||||||||||||| |||||| | | | | | |||||
Sbjct 295 TTACAAAACTGTCCGAACCAGACCGACTCATTCGACTGGAGA-G-G-C-A-----ACAAG 345
Query 355 ACGCTCTGTTTCGTTCGTTACTCTAACAACTCGTTTTTCAACAAGATGGCTCTAGAGCC- 413
||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 346 ACGCTCTGTTTCGTTCGTTACTCCAACAGCTCGTTTTTCAACAAGATGGATCTAGAGCCG 405
Query 414 A-ACTCACGCAGTTTACAATACTATGAGGTTCCAAGGGAACCTCACAGCTTAT-ACAAGA 471
| | | | |||||| || ||||| | ||| ||||| ||| | | | ||||| || |||
Sbjct 406 ACAGT-A-ACAGTTTTCAGTACTAAAAAGTTTCAAGGTAACTTTAAAACTTATAAC-AGA 462
Query 472 ACATGGGACGCGTTCATGAACTTTATGTTCACCCGAGTCGGTCAAACTCGATACCTGGCT 531
|||||||||||| |||||||||||||| ||||||||||||||||| ||| |||||| ||
Sbjct 463 ACATGGGACGCGCTCATGAACTTTATGATCACCCGAGTCGGTCAATCTCAATACCTTGCC 522
Query 532 GATATATCCCCTCGGATAAATCAGGAACCTTTGTCTCCTGATCTTATATACGCGCTGATG 591
|| |||||||||| | ||| ||| | | | ||||| ||||||| | ||||||
Sbjct 523 GAAATATCCCCTC-G---AAT-AGG------T-T-T--TGATCGTATATACACTCTGATG 567
Query 592 CAGTGTATTCCGGGGATATCTTCTGAA-GACTGTGAAACCTGTCTTGGA-AAATGTGT-C 648
||||||||||||||| |||| ||| || ||||||||||||||| || | || |||| |
Sbjct 568 CAGTGTATTCCGGGGCTATCCTCT-AACGACTGTGAAACCTGTATTACAGTAA-GTGTCC 625
Query 649 GATGACTACCAGAGTTGCTGCAATGGGTTCATAGGTGGAGTCGTTAACAAGCCGGTCTGC 708
| | | |||||||| ||||||||||| ||| |||||||||||||| |||||| ||||||
Sbjct 626 G-TAATTACCAGAGATGCTGCAATGGCTTCGTAGGTGGAGTCGTTCGCAAGCCTGTCTGC 684
Query 709 TATTTCCGGTGGGATGGTTATAAATAT-TATGGTGCCTTCGGTGATGA-AGCGCCATC-T 765
| ||||||||||||||||||| ||||| | ||||||||| ||| | | | ||| ||| |
Sbjct 685 TTTTTCCGGTGGGATGGTTATGAATATCT-TGGTGCCTTTGGT-A--ACA-CGCAATCAT 739
Query 766 CAACC-CCCCACGCCGCTtcctcttcctcctcctcctcctcGTGATCCAGATGG-AAAAA 823
||| || || | | || | || || | |||||||| || |||||| |||||
Sbjct 740 -TACCTCCTCAAGAATC-TCAACCCCCGCCGCTTCCTCCTCCTG---GAGATGGCAAAAA 794
Query 824 AGATCTCTACAGGAGTTATTGTGGCTATTGTTGTTTCCGCAGTTATCTTCGTGGTGCTAG 883
| || ||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |
Sbjct 795 AAAT-TCTACAGGAGTTATTGTGGCTATCGTTGTTTCCGCTGTTATCTTCGCGGTGCT-G 852
Query 884 -TCGCTTTAGGATTAGTTATTTGGAAGCGAAGACAATCATACAAAACACTGAAATATCAT 942
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||
Sbjct 853 CTCGCTTTAGGATTAGTTATTTGGAAGAGAAGAAAATCATACCAAACACTGAAACCTCAA 912
Query 943 ACTGATGATGATATGACAAGTCCACAGTCTCTGCAATTTGATTTTACAACAATTGAAGTG 1002
||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||| |
Sbjct 913 ACTGATGATGACATGATAAGTCCACAGTCTCTGCAATTTGATTTTGCAACAATTGAAGCG 972
Query 1003 GCAACAGATAATTTTTCGAGGAACAACAAGCTAGGTCAAGGCGGATTCGGTGAAGTTTAC 1062
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 973 GCAACAGATAAGTTTTCGAGGAACAACAAGCTAGGACAAGGCGGATTCGGTGAAGTTTAC 1032
Query 1063 AAGGGAATGTTACCTAATGAAACAGAAATTGCGGTAAAGCGTCTATCGAGTAATTCAGGA 1122
|||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 1033 AAGGGAATGTTACCAAATGAAACAGAAATTGCGGTAAAGCGGCTATCAAGAAATTCAGGA 1092
Query 1123 CAAGGCACACAAGAGTTCAAGAACGAGGTTGTGATTGTGGCCAAACTTCAACACAAGAAT 1182
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1093 CAAGGCACACAAGAGTTCAAGAACGAGGTTGTGATTGTGGCTAAACTTCAACACAAGAAT 1152
Query 1183 CTTGTTAGGCTTCTTGGGTTTTGCATAGAAAGAGATGAACAGATACTTGTCTACGAGTTT 1242
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1153 CTTGTTAGGCTTCTTGGGTTTTGCTTAGAAAGAGATGAACAGATACTTGTCTACGAGTTT 1212
Query 1243 GTTTCCAACAAGAGCCTTGATTATTTCCTCTTTGATCCAA-AAATGAAAAGTCAACTAGA 1301
||| |||||||||||||||||||||||||||||||||||| ||| ||| | ||| |||||
Sbjct 1213 GTTCCCAACAAGAGCCTTGATTATTTCCTCTTTGATCCAACAAA-GAAGACTCAGCTAGA 1271
Query 1302 TTGGAAAAGACGGTACAACATCATAGGAGGGGTTACGCGAGGACTTCTCTATCTTCATCA 1361
||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct 1272 TTGGAAAAGACGGTACAACATCATAGGAGGGATTACGCGAGGGCTTCTATATCTTCATCA 1331
Query 1362 AGACTCAAGGCTAACAATCATACACCGTGACATCAAAGCAAGTAACATACTTTTAGATGC 1421
||||||||| || || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1332 AGACTCAAGACTCACCATCATACACCGTGACATCAAAGCAAGTAACATTCTTTTAGATGC 1391
Query 1422 TGATATGAACCCTAAAATAGCTGATTTTGGAATGGCAAGGAATTTTAGAGTGGACCAAAC 1481
|||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1392 CGATATGAACCCTAAAATAGCAGATTTCGGAATGGCAAGGAATTTCAGAGTGGACCAAAC 1451
Query 1482 TGAAGACCAGACAGGAAGAGTTGTTGGAACCTTCGGTTACATGCCTCCAGAGTATGTGAC 1541
|||||| | ||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1452 TGAAGAAAATACAGGCAGAGTTGTTGGAACATTCGGTTACATGCCTCCAGAATATGTGAC 1511
Query 1542 ACATGGCCAATTCTCTACCAAATCTGATGTATATAGCTTTGGTGTATTGA-TCTTGGAGA 1600
||||||||||||||||||||||| ||||| |||||||| || ||||||| || ||||||
Sbjct 1512 GCATGGCCAATTCTCTACCAAATCCGATGTCTATAGCTTCGGAGTATTGATTC-TGGAGA 1570
Query 1601 TTGTTTGTGGCAAGAAGAACAGCAGCTTCTTTCAGATGGATGATTCTGGGGGAAATTTAG 1660
|| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
Sbjct 1571 TTATTTGTGGCAAGAAGAATAGCAGCTTCTATCAGATGGATGATTCTGGGGGAAATTTGG 1630
Query 1661 TGACACATGTTTGGAGGCTTTGGAACAATGATTCACCCTTAGATCTCATCGACCCTGCGA 1720
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1631 TGACACATGTTTGGAGGCTTTGGAACAATGATTCACCTTTAGATCTCATCGACCCTGCGA 1690
Query 1721 TTAAGGAAAGCTACGATAATGATGAAGTCATTAGATGTATCCATATCGGAATTTTATGTG 1780
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1691 TTAGGGAAAGCTACGATAATGATGAAGTCATTAGATGTATCCATATCGGAATTTTATGTG 1750
Query 1781 TTCAAGAAACTCCGGCAGATCGTCCAGAGATGTCTACAATCTTTCAAATGCTTACCAATA 1840
||||||||||||| || |||||||| ||||||||||||| ||||||||||||||| ||||
Sbjct 1751 TTCAAGAAACTCCCGCTGATCGTCCGGAGATGTCTACAACCTTTCAAATGCTTACGAATA 1810
Query 1841 GCTCCATTACTCTGCCTGTGCCTCGACCACCTGGATTTTTCTTCAGGAACAGACCCAATT 1900
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1811 GCTCCATTACTCTGCCTGTGCCTCGCCCACCTGGATTTTTCTTCAGGAACAGGCCCAATT 1870
Query 1901 TAGACCCCTTAACCTATGGATCCGAGC-AGGGGCAATCCAGCAGCATGTCTGTTCCTTTT 1959
||||||| ||||| ||||||||||||| |||| |||||||||| |||||||||||||| |
Sbjct 1871 TAGACCCTTTAACTTATGGATCCGAGCCAGGG-CAATCCAGCAACATGTCTGTTCCTTAT 1929
Query 1960 TCTATAGATAGTGCGTCAATCACTAGAGCCACTCCTCGGTGA 2001
|||||||||||||||||||||||||||| |||||||||||||
Sbjct 1930 TCTATAGATAGTGCGTCAATCACTAGAGTCACTCCTCGGTGA 1971
> Ahg489975 jgi|Araly1|489975|fgenesh2_kg.6__3109__AT4G11480.1
Length=1881
Score = 1336 bits (723), Expect = 0.0
Identities = 948/1057 (90%), Gaps = 13/1057 (1%)
Strand=Plus/Plus
Query 810 TCCAGAT-GGAAAAAAGATCTCTACAGGAGTTATTG-T--GGCTATTGTTGTTTCCGCAG 865
||||||| |||||| | || ||||| |||| ||||| | || | ||||||||||||| |
Sbjct 756 TCCAGATGGGAAAACA-ATATCTACGGGAGCTATTGTTGCGGTTGTTGTTGTTTCCGCGG 814
Query 866 TTATCTTCGTGGTGCTAG-TCGCTTTAGGATTAGTTATTTGGAAGCGAAGACAATCATAC 924
|||| || || | ||| | ||||||||| ||| |||||| ||||| ||||||||||||||
Sbjct 815 TTATATTTGTCGCGCT-GCTCGCTTTAGTATTGGTTATTCGGAAGAGAAGACAATCATAC 873
Query 925 AAAACACTGAAATATCATACTGATGATGATATGACAAGTCCACAGTCTCTGCAATTTGAT 984
|||||||| ||| ||| |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 874 AAAACACTAAAACCTCAAACTGATAATGACATGACAAGTCCACAGTCTCTGCAATTTGAT 933
Query 985 TTTACAACAATTGAAGTGGCAACAGATAATTTTTCGAGGAACAACAAGCTAGGTCAAGGC 1044
|||| || | |||| |||||| ||||| |||||| |||| |||||||||||||||||
Sbjct 934 TTTATGACCCTCGAAGCGGCAACTGATAAATTTTCGGGGAATAACAAGCTAGGTCAAGGT 993
Query 1045 GGATTCGGTGAAGTTTACAAGGGAATGTTACCTAATGAAACAGAAATTGCGGTAAAGCGT 1104
|||||||| ||| ||| |||||||| ||||| ||| |||||||| ||||||| |||||
Sbjct 994 GGATTCGGCGAAATTTTTAAGGGAATATTACCAAATCAAACAGAAGTTGCGGTGAAGCGG 1053
Query 1105 CTATCGAGT-AATTCAGGACAAGGCACACAAGAGTTCAAGAACGAGGTTGTGATTGTGGC 1163
||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1054 CTATCGA-TAAATTCAGGACAAGGCACACAAGAGTTCAAGAACGAGGTTGTAATTGTGGC 1112
Query 1164 CAAACTTCAACACAAGAATCTTGTTAGGCTTCTTGGGTTTTGCATAGAAAGAGATGAACA 1223
|| |||||||||| |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1113 TAAGCTTCAACACAGGAATCTTGTTAGGCTTCTTGGGTTTTGCTTAGAAAGATATGAACA 1172
Query 1224 GATACTTGTCTACGAGTTTGTTTCCAACAAGAGCCTTGATTATTTCCTCTTTGATCCAA- 1282
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1173 GATACTTGTCTACGAGTTTGTTTCCAACAAGAGCCTTAACTATTTCCTCTTTGATCCAAC 1232
Query 1283 AAATGAAAAGTCAACTAGATTGGAAAAGACGGTACAACATCATAGGAGGGGTTACGCGAG 1342
||| ||| ||||| ||||||||||||| ||| |||| |||||| |||||| |||||||||
Sbjct 1233 AAA-GAAGAGTCAGCTAGATTGGAAAATACGATACAGCATCATTGGAGGGATTACGCGAG 1291
Query 1343 GACTTCTCTATCTTCATCAAGACTCAAGGCTAACAATCATACACCGTGACATCAAAGCAA 1402
| ||||||||||||||||||||||| |||| || || ||||||||||||||||||||||
Sbjct 1292 GGCTTCTCTATCTTCATCAAGACTCGCGGCTCACCATTATACACCGTGACATCAAAGCAA 1351
Query 1403 GTAACATACTTTTAGATGCTGATATGAACCCTAAAATAGCTGATTTTGGAATGGCAAGGA 1462
||||||| ||||||||||| |||||||||||||||||||| ||||| ||||| ||||| |
Sbjct 1352 GTAACATTCTTTTAGATGCCGATATGAACCCTAAAATAGCGGATTTCGGAATCGCAAGAA 1411
Query 1463 ATTTTAGAGTGGACCAAACTGAAGACCAGACAGGAAGAGTTGTTGGAACCTTCGGTTACA 1522
||||||| |||||||||||||||||| | |||||||||||||||||||| ||||||||||
Sbjct 1412 ATTTTAGCGTGGACCAAACTGAAGACAATACAGGAAGAGTTGTTGGAACATTCGGTTACA 1471
Query 1523 TGCCTCCAGAGTATGTGACACATGGCCAATTCTCTACCAAATCTGATGTATATAGCTTTG 1582
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 1472 TGCCTCCAGAGTATGTGACGCACGGCCAATTCTCTACCAAATCTGATGTTTATAGCTTTG 1531
Query 1583 GTGTATTGAT-CTTGGAGATTGTTTGTGGCAAGAAGAACAGCAGCTTCTTTCAGATGGAT 1641
| |||||||| || ||||||| |||||||||||||||| |||||||||| ||||||| |
Sbjct 1532 GAGTATTGATTCT-GGAGATTATTTGTGGCAAGAAGAATAGCAGCTTCTACCAGATGGCT 1590
Query 1642 GATTCTGGGGGAAATTTAGTGACACATGTTTGGAGGCTTTGGAACAATGATTCACCCTTA 1701
|||||||| || ||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1591 GATTCTGGTGGCAATTTGGTGACACATGTTTGGAGGCTTTGGAACAACGCTTCACCCTTA 1650
Query 1702 GATCTCATCGACCCTGCGATTAAGGAAAGCTACGATAATGATGAAGTCATTAGATGTATC 1761
|||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1651 GATCTCATAGACCCCGCGATTAAGGAAAGCTACGATAATGATGTAGTCATTAGATGTATA 1710
Query 1762 CATATCGGAATTTTATGTGTTCAAGAAACTCCGGCAGATCGTCCAGAGATGTCTACAATC 1821
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1711 CATATCGGAATTTTATGTGTTCAAGAAACTCCGGCAGATCGTCCGGAGATGTCTACGATC 1770
Query 1822 TTTCAAATGCTTACCAATAGCTCCATTACTCTGCCTG 1858
|||||||||||||| ||||||| ||||||||| ||||
Sbjct 1771 TTTCAAATGCTTACAAATAGCTTCATTACTCTACCTG 1807
Score = 527 bits (285), Expect = 1e-148
Identities = 619/771 (80%), Gaps = 59/771 (8%)
Strand=Plus/Plus
Query 1 ATGTGTTTGAACACTCTC-TGTGCAATCCTCTGTTTTGTCCTTACCGTTAGTTTCGGCTT 59
|||| | || ||| |||| ||| ||||||||||||||||||| || |||| |||||||
Sbjct 1 ATGTCTCTGCACAATCTCTTGT-CAATCCTCTGTTTTGTCCTCGCCATTAGCTTCGGCTA 59
Query 60 CGTCTCTGCCCAAAAATGCGGGGAGTCTGTGTTTTTCAGACCTAACGGTAAC-TATGACA 118
||| ||||| |||||||| | ||| || ||||||||||||| |||||| || |||||||
Sbjct 60 CGTGTCTGCACAAAAATGTGTGGACTCAATGTTTTTCAGACCCAACGGT-ACTTATGACA 118
Query 119 CTAACCGTCGTCTCGTTCTATCAACGT-TAGCTTCCAACGTCAGTTCTCAAAACAACCGC 177
| |||||||||||| |||| ||||| | | ||||||||||| || | || | | ||
Sbjct 119 CAAACCGTCGTCTCATTCTCTCAAC-TCTTGCTTCCAACGTGAG-T-ACACGA-GATGGC 174
Query 178 TTCTACAACGTTTCGGTCGGTGAAGGAGCTGGAAGAATCTATGCCTTAGGTCTCTGTATC 237
| |||||||| ||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct 175 TACTACAACGGTTCGGTCGGTGAAGGCCCTGAAAAAATCTATGCCTTAGGTCTCTGTATC 234
Query 238 CCAGGGTCTGATCCAAGGGTGTGTTCCGATTGTATCCAACTCGCGTCTCAAGG-TTTATT 296
||| || ||||||||| ||| ||||| |||||||||||| |||| ||| | || ||||||
Sbjct 235 CCAAGGACTGATCCAAAGGTCTGTTCTGATTGTATCCAAATCGCATCT-ACGGGTTTATT 293
Query 297 ACAAACCTGTCCGAACCAGACCGACTCATTCTACTGGACAGGCGACAACGCC-GACAAGA 355
||||| ||| ||||||||||||||||| || || | || || || | || || || |
Sbjct 294 ACAAAACTGCCCGAACCAGACCGACTC-TT--AC-G-ACTGGAGAT--C-CCAGA-AA-A 343
Query 356 CGCTCTGTTTCGTTCGTTACTCTAACAACTCGTTTTTCAACAAGATGGCTCTAGAGCCAA 415
| |||||||||||||||||||| |||| |||||||| |||||| |||| ||||||||| |
Sbjct 344 CACTCTGTTTCGTTCGTTACTCCAACAGCTCGTTTTCCAACAAAATGGATCTAGAGCCGA 403
Query 416 C--TCAC----GCAGTT-TACAATACTATGAGG-TTCCAAGGGAACCTCACAGCTTATAC 467
| | | | || | || |||| | || |||||||||||||| ||||||||| |
Sbjct 404 CAATGATAATAGGAGATCTA-AATAGTG-GACTATTCCAAGGGAACCTAACAGCTTATTC 461
Query 468 AAGAACATGGGACGCGTTCATGAACTTTATGTTCACCCGAGTCGGTCAAACTCGATACCT 527
|||||||||||| | ||||||||| | |||| ||||||||||||||| |||||| |||||
Sbjct 462 AAGAACATGGGAGGTGTTCATGAAATCTATGATCACCCGAGTCGGTCGAACTCGTTACCT 521
Query 528 GGCTGATATATCCCCTCGGATAAATCAGGAACCTTTGTCTCCTGATCTTATATACGCGCT 587
||| ||||| |||||||||||| || | | || ||| | | |||||||||||
Sbjct 522 GGCCGATATTTCCCCTCGGATA-----GG--C-TCTG-CTC--G-T---ATATACGCGCT 566
Query 588 GATGCAGTGTATTCCGGGGATATCTTCTGAAGACTGTG-AAACCTGTCTT-GG-AAAATG 644
|||||| ||||||||||||||||| ||| || |||| ||| ||| || || ||||||
Sbjct 567 GATGCAATGTATTCCGGGGATATCCTCTTTGGAATGTGGAAAT-TGTATTCGGGAAAATG 625
Query 645 TGTCG-ATGACTACCAGAGTTGCTGCAATGGGTTCATAGGTGGAG-TCGTTAACAAGCCG 702
|| || ||| ||||||| ||||||||||||||||||||| ||| | || |||||||
Sbjct 626 TG-CGGATG--TACCAGAATTGCTGCAATGGGTTCATAGGAGGAACTA-TTCGCAAGCCG 681
Query 703 GTCTGCTATTTCCGGTGGGATGGTTATAAATAT-TATGGTGCCTTCGGTGA 752
||||||| ||| ||||||||||||| | ||||| | ||||||||| |||||
Sbjct 682 GTCTGCTTTTTACGGTGGGATGGTTCTGAATATCT-TGGTGCCTTTGGTGA 731
> Ahg895324 jgi|Araly1|895324|Al_scaffold_0006_3320
Length=2007
Score = 756 bits (409), Expect = 0.0
Identities = 883/1105 (80%), Gaps = 60/1105 (5%)
Strand=Plus/Plus
Query 810 TCCAGATGGAAAAAAGATCTCTACAGGAGTTATTGTGGCTATTGTTGTT-TCCGCAGTTA 868
||||||||| |||| ||| ||||||||| |||| ||| |||||| | || |||| || |
Sbjct 825 TCCAGATGGCAAAACGATTTCTACAGGAATTATAGTGTCTATTG-TCTTCTCCGTGGTCA 883
Query 869 TCTTCGTGGTGCTAG-TCGCTTTAGGATTAG-TTATTTGGAAGCGAAGACAATCATACAA 926
| ||||||| ||| | | ||| |||| || | || ||| |||| |||||||| |||||||
Sbjct 884 TATTCGTGGCGCT-GTTTGCTCTAGGGTT-GATTTTTTTGAAGAGAAGACAAACATACAA 941
Query 927 AACACTGAAA--TATCATACTGATGATGATATGACAAGTCCACAGTCTCTGCAATTTGAT 984
| || | ||| | | | ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 942 AGCA-TTAAAGCT-TGAAACTAATGATGATATTACAAGTCCACAGTCTCTGCAATTTGAT 999
Query 985 TTTACA-ACAATTGAAGTGGCAACAGATAATTTTTCGAGGAACAACAA-GCTAGGTCAAG 1042
|| | | |||||||||| |||||| ||||| |||||| |||||||||| | | |||||||
Sbjct 1000 TTCA-AGACAATTGAAGCGGCAACTGATAAATTTTCGGGGAACAACAAAG-TCGGTCAAG 1057
Query 1043 GCGGATTCGGTGAAGTTTACAAGGGAATG-TTACCTA-ATGAAACAGAAATTGCGGTAAA 1100
| ||||| ||||||||||||||||||| | ||| | | ||| ||| ||| |||| || ||
Sbjct 1058 GTGGATTTGGTGAAGTTTACAAGGGAA-GATTATC-AGATGGAACTGAAGTTGCCGTGAA 1115
Query 1101 GCGTCTATCGAGTAATTCAGGACAAGGCACACAAGAGTTCAAGAACGAGGTTGTGATTGT 1160
||| ||||| | ||||||||||||||| |||||||||| ||||| |||||||| ||||
Sbjct 1116 GCGACTATCAAAAAATTCAGGACAAGGCTCACAAGAGTTTAAGAATGAGGTTGTTCTTGT 1175
Query 1161 GGCCAAACTTCAACACAAGAA-TCTTGTTAGGCTTCTTGGGTTTTGCATAGAAAGAGATG 1219
||| || |||||||| | ||| ||||||||||||||||||||||||| | ||| |||| |
Sbjct 1176 GGCGAAGCTTCAACATA-GAAATCTTGTTAGGCTTCTTGGGTTTTGCTTGGAAGGAGAAG 1234
Query 1220 AACAGATACTTGTCTACGAGTTTGTTTCCAACAAGAGCCTTGATTATTTCCTCTTTGATC 1279
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||| || |
Sbjct 1235 AACAGATACTTGTCTATGAGTTTGTTCCCAACAAGAGCCTTGATTATTTCCTCTTCGACC 1294
Query 1280 CAAAAATGAAAAGTC-A-A-CTAGATTGGAAAAGACGGTACAACATCATAGGAGGGGTTA 1336
||| || || ||| | | ||||||||| |||||||||||| ||||| |||||| ||
Sbjct 1295 CAACAA--AAC-GTCGACAACTAGATTGGGGAAGACGGTACAATATCATTGGAGGGATTG 1351
Query 1337 CGCGAGG-ACTTCTCTATCTTCATCAAGACTCAAGGCTAACAATCATACACCGTGA-CAT 1394
| ||||| | ||||||||||||||||||| ||| |||| ||||||||||||||||| | |
Sbjct 1352 CTCGAGGGA-TTCTCTATCTTCATCAAGATTCACGGCTCACAATCATACACCGTGATC-T 1409
Query 1395 CAAAGCAAGTAACATACTTTTAGATGCTGATATGAACCCTAAAATAGCTGATTTTGGAAT 1454
|||||| || ||||| ||| |||||| |||||||||||| |||||||| |||||||| ||
Sbjct 1410 CAAAGCGAGCAACATTCTTCTAGATGATGATATGAACCCGAAAATAGCGGATTTTGGCAT 1469
Query 1455 GGCAAGGAATTTTAG-AGTGGACCAAACT-GAAGACCAG-AC-AGGAAGAGTTGTTGGAA 1510
|||||||||||| | | |||| |||||| || | ||| || || || | | | |||||
Sbjct 1470 GGCAAGGAATTTCGGGA-TGGAGCAAACTCGA-G-CCAATACTAGCAAAA-TAGCTGGAA 1525
Query 1511 CCTTCGGTTACATGCCTCCAGAGTATGTGACACATGGCCAATTCTCTACCAAATCTGATG 1570
|||||||||||||| |||| |||||||||| || || ||||| || | |||||||||
Sbjct 1526 CCTTCGGTTACATGGCTCCCGAGTATGTGATGCACGGTCAATTTTCCATGAAATCTGATA 1585
Query 1571 TATATAGCTTTGGTGTATTGAT-CTTGGAGATTGTTTGTGGCAAGAAGAACAGCAGCTTC 1629
| |||||||| || || ||| | |||| ||||| | |||| |||| ||| || ||||||
Sbjct 1586 TCTATAGCTTCGGAGTGTTGGTTCTTG-AGATTATAAGTGGTAAGATGAATAGTAGCTTC 1644
Query 1630 TTTCAGATG-GATG-ATTCTGGGGGAAATTTAGTGACACATGTTTGGAGGCTTTGGA-AC 1686
| ||| || |||| || ||| || |||||||| ||||||| |||||| || |||| |
Sbjct 1645 TATCA-ATCAGATGGAT-CTGCTGGCAATTTAGTAACACATGCTTGGAGACTATGGAGAA 1702
Query 1687 AATGATTCACCCTTAGATCTCATCGACCCTG-CGATT-AAGGAAAGCTA-CGATAATGAT 1743
|| | ||| || ||||| ||| | ||| | | | ||| |||| || || | | | |||
Sbjct 1703 AAGG-TTCGCCTTTAGAACTCTTGGACTC-GACTATTGAAGGGAAT-TATC-AGAGCGAT 1758
Query 1744 GAAGTCATTAGATGTATCCATATCG-GAATTTTATGTGTTCAAGAA-ACTCCGGCAGATC 1801
||||| | ||||| || ||||||| | |||||||||| ||||| | ||| | | |||
Sbjct 1759 GAAGTTACAAGATGCATTCATATCGCGC-TTTTATGTGTGCAAGAGGA-TCCTGAAAATC 1816
Query 1802 GTCCAGA-GATGTCTACAATC-TTTCAAATGCTTACCAATAGCTCCATTACTCTGCCTGT 1859
||||| | |||||||||||| ||| | |||| || | || | | || ||| | | ||
Sbjct 1817 GTCCA-ATGATGTCTACAATTATTTTGA-TGCTCACTAGTAACACAATCACTTTACAAGT 1874
Query 1860 GCCTCGACCACCTGGATTTTTCTTC 1884
|||||| |||||| |||||||||
Sbjct 1875 GCCTCGTGCACCTGCTTTTTTCTTC 1899
> Ahg489974 jgi|Araly1|489974|fgenesh2_kg.6__3108__AT4G11460.1
Length=2016
Score = 736 bits (398), Expect = 0.0
Identities = 773/949 (81%), Gaps = 45/949 (5%)
Strand=Plus/Plus
Query 1078 AATGAAACAGAAATTGCGGTAAAGCGTCTATCGAGTAA-TTCAGGA-CAAGG-CACACAA 1134
|||| ||| ||| |||| || ||| | || || || || |||| || ||||| | ||
Sbjct 1084 AATGGAACTGAAGTTGCAGTTAAGAGGCTGTCAAG-AACTTCA-GATCAAGGTGA-ACTG 1140
Query 1135 GAGTTCAAGAACGAGGTTG-TGATTGTGGCCAAA-CTTCAACACAAGAATCTTGTTAGGC 1192
|||||||||||||||| || | | || | |||| ||||| | | |||||| |||||||
Sbjct 1141 GAGTTCAAGAACGAGG-TGCTTCTGGTAG-CAAAGCTTCAGCCCCGGAATCTCGTTAGGC 1198
Query 1193 TTCTTGGGTTTTGCAT-AG-AAAGAGATGAACAGATACTTGTCTACGAGTTTGTTTCCAA 1250
||| | |||||||| | | || |||| ||| ||||||| |||| ||||||||| ||||
Sbjct 1199 TTC-TCGGTTTTGC-TCTGCAAGGAGAAGAAAAGATACTCGTCTTTGAGTTTGTTCCCAA 1256
Query 1251 CAAGAGCCTTGATTATTTCCTCTT---T-G-A-T---CCAA-AAATGAAAAGTCAACTAG 1300
||||||||| |||||||||||||| | | | | |||| ||| ||| |||| || |
Sbjct 1257 CAAGAGCCTCGATTATTTCCTCTTCGGTAGTACTAACCCAACAAA-GAAGGGTCAGCTGG 1315
Query 1301 ATTGGAAAAGACGGTACAACATCATAGGAGGGGTTACGCGA-GGACTTCTCTATCTTCAT 1359
| |||| |||| ||||||||||||| |||||| |||| ||| ||| ||||||||||||||
Sbjct 1316 ACTGGACAAGATGGTACAACATCATCGGAGGGATTACACGAGGGA-TTCTCTATCTTCAT 1374
Query 1360 CAAGACTCAAGGCTAACAATCATACACCGTGACATCAAAGCAAGTAACATACTTTTAGAT 1419
|||||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1375 CAAGACTCGAGGCTCACCATCATACACCGTGACATCAAAGCGAGTAACATTCTTTTAGAT 1434
Query 1420 GCTGATATGAACCCTAAAATAGCTGATTTTGGAATGGCAAGGAATTTTAGAG-TGGACCA 1478
|| |||||||||| |||||||| ||||| | |||||| |||||||| |||| | | ||
Sbjct 1435 GCCAATATGAACCCGAAAATAGCGGATTTCGAAATGGCTAGGAATTTCAGAGAT-CATCA 1493
Query 1479 AACTGAAGACCAG-ACAGGAAGAGTTGTTGGAACCTTCGGTTACATGCCTCCAGAGTATG 1537
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1494 AACTGAAGA-CAGTACAGGAAGAGTTGTTGGAACCTTCGGTTACATGCCTCCAGAATATG 1552
Query 1538 TGACACATGGCCAATTCTCTACCAAATCTGATGTATATAGCTTTGGTGTATTGAT-CTTG 1596
|||| ||||||||||||||||||||||| ||||| |||||||| || |||||||| || |
Sbjct 1553 TGACGCATGGCCAATTCTCTACCAAATCCGATGTCTATAGCTTCGGAGTATTGATTCT-G 1611
Query 1597 GAGATTGTTTGTGGCAAGAAGAACAGCAGCTTCTTTCAGATGGATGATTCTGGGGGAAAT 1656
||||||||| |||||| |||||| |||||||||| ||||||||||| ||||| | ||
Sbjct 1612 GAGATTGTTAGTGGCAGGAAGAATAGCAGCTTCTATCAGATGGATGGTTCTGTTTGCAAC 1671
Query 1657 TTAGTGACACATGTTTGGAGGCTTTGGAACAATGATTCACCCTTAGATCTCATCGACCCT 1716
|| || ||| |||||||||| |||||||||| |||| || |||| || ||||| || ||
Sbjct 1672 TTGGTCACATATGTTTGGAGACTTTGGAACACTGATACATCCTTGGAGCTCATAGATCCG 1731
Query 1717 GCGATTAAGGAAAGCTACGATAATGATGAAGTCATTAGATGTATCCATATCGGAATTTTA 1776
||||||| |||||| || || || |||||||||| |||||| |||||||||||| |||||
Sbjct 1732 GCGATTAGGGAAAGTTATGAGAAAGATGAAGTCACTAGATGCATCCATATCGGACTTTTA 1791
Query 1777 TGTGTTCAAGAAACTCCGGCAGATCGTCCAGAGATGTCTACAATCTTTCAAATGCTTACC 1836
|| |||||||||| ||| ||| |||| |||| ||||||||| | || || ||||| |||
Sbjct 1792 TGCGTTCAAGAAAATCCTGCAAATCGCCCAGCTATGTCTACAGTATTCCAGATGCTCACC 1851
Query 1837 AATAGCTCCATTACTCTGCCTGTGCCTCGACCACCTGGATTTTTCTTCAGGAACAGACCC 1896
||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||
Sbjct 1852 AATAGCTCCATTACTCTAAATGTCCCTCAACCACCTGGATTTTTCTTCAGGAACAGACCC 1911
Query 1897 -AATTTAGACCCCTTAA-CCT-ATG-GATCCGAGCAGGGGCAATCCAGCAGCATGTCTGT 1952
||| ||| | |||| || | | | | ||||||| |||| | || || |||||
Sbjct 1912 GAATCG-GACACATTAAGCCGCA-GAG-TG-GAGCAGGACCAATATAACACCAAATCTGT 1967
Query 1953 TCCTTTTTCTATAGAT-AGTGCGTCAATCACTAGAGC-CACTCCTCGGT 1999
| ||| |||||| || | ||| | ||||||| | | |||||||||||
Sbjct 1968 TACTTGTTCTATCGACGA-TGCAACGATCACTACA-CTCACTCCTCGGT 2014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75228233875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5