BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11480.1
Length=1971
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489975 jgi|Araly1|489975|fgenesh2_kg.6__3109__AT4G11480.1 2547 0.0
Ahg895321 jgi|Araly1|895321|Al_scaffold_0006_3317 1495 0.0
Ahg489974 jgi|Araly1|489974|fgenesh2_kg.6__3108__AT4G11460.1 750 0.0
Ahg895324 jgi|Araly1|895324|Al_scaffold_0006_3320 736 0.0
> Ahg489975 jgi|Araly1|489975|fgenesh2_kg.6__3109__AT4G11480.1
Length=1881
Score = 2547 bits (1379), Expect = 0.0
Identities = 1692/1838 (92%), Gaps = 41/1838 (2%)
Strand=Plus/Plus
Query 1 ATGTGTCTGCAAAATCTCTTGTCAATCCTCTGTTTTGTCCTCGCCATTAGCTTCGGCTAC 60
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTCTGCACAATCTCTTGTCAATCCTCTGTTTTGTCCTCGCCATTAGCTTCGGCTAC 60
Query 61 GTGTCTGCACAAAAATGCGTGGATTCAATGTTTTTCAGACCCAACGGTACTTATGACACA 120
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGTCTGCACAAAAATGTGTGGACTCAATGTTTTTCAGACCCAACGGTACTTATGACACA 120
Query 121 AACCGTCATCTCATTCTCTCAAAC-CTTGCTTCCAACGTGAGTTCTCGAGACGGCTACTA 179
||||||| |||||||||||| ||| |||||||||||||||||| | ||||| ||||||||
Sbjct 121 AACCGTCGTCTCATTCTCTC-AACTCTTGCTTCCAACGTGAGTACACGAGATGGCTACTA 179
Query 180 CAACGGTTCTGTCGGTGAAGGCCCTGATAGAATCTATGCGTTAGGTCTCTGTATCCCAGG 239
||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||||| |
Sbjct 180 CAACGGTTCGGTCGGTGAAGGCCCTGAAAAAATCTATGCCTTAGGTCTCTGTATCCCAAG 239
Query 240 GACTGATCCAAAGGTCTGTGATGATTGTATGCAAATCGCATCTACGGGTATATTACAAAA 299
||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 240 GACTGATCCAAAGGTCTGTTCTGATTGTATCCAAATCGCATCTACGGGTTTATTACAAAA 299
Query 300 CTGCCCGAACCAGACCGACTCATACGACTGGAGATCCCAGAAAACACTCTGTTTCGTTCG 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTGCCCGAACCAGACCGACTCTTACGACTGGAGATCCCAGAAAACACTCTGTTTCGTTCG 359
Query 360 TTACTCCAACAGCTCGTTTTTCAACAAAATGGATCTAGAGCCGACAATGGTTATAGGAGA 419
|||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||
Sbjct 360 TTACTCCAACAGCTCGTTTTCCAACAAAATGGATCTAGAGCCGACAATGATAATAGGAGA 419
Query 420 TCTAAATAGTGGACTATTCCAAGGGGACCTTGCAGCTTATACAAGAACATGGGAGGAGTT 479
||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| |||
Sbjct 420 TCTAAATAGTGGACTATTCCAAGGGAACCTAACAGCTTATTCAAGAACATGGGAGGTGTT 479
Query 480 CATGAACTCTATGATCACCAGAGTCGGTCGAACTCGTTACCTGGCCGATATATCCCCTCG 539
|||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 CATGAAATCTATGATCACCCGAGTCGGTCGAACTCGTTACCTGGCCGATATTTCCCCTCG 539
Query 540 GATAGGTTCTGCTCGTATATATGCGCTGATGCAATGTATT-CGAGGGATATCCTCTATGG 598
|||||| |||||||||||||| |||||||||||||||||| || |||||||||||| |||
Sbjct 540 GATAGGCTCTGCTCGTATATACGCGCTGATGCAATGTATTCCG-GGGATATCCTCTTTGG 598
Query 599 AATGT-GAAACTTGTATTCGAGATAATGTGCGTATGTACCAGAGTTGCTGCAATGGGTTC 657
||||| |||| ||||||||| || |||||||| |||||||||| ||||||||||||||||
Sbjct 599 AATGTGGAAA-TTGTATTCGGGAAAATGTGCGGATGTACCAGAATTGCTGCAATGGGTTC 657
Query 658 ATAGGAGGAACTATTCGCAAGCCGGTCTGCTTTTTCA-GGTGGGATGGTTCTGAATATCT 716
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 658 ATAGGAGGAACTATTCGCAAGCCGGTCTGCTTTTT-ACGGTGGGATGGTTCTGAATATCT 716
Query 717 TGGTGCCTTTGGTGACACGCCATCGCTACCTCCACCATCTCCAGATGGGAAAACAATATC 776
|||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||
Sbjct 717 TGGTGCCTTTGGTGACACGCCATCGCTAACTCCATCTTCTCCAGATGGGAAAACAATATC 776
Query 777 TACGGGAGCTATTGTTGC---AGTTGTTGTCTCCGTGGTTATATTTGTAGTGCTGCTCGC 833
|||||||||||||||||| |||||||| |||| |||||||||||| | |||||||||
Sbjct 777 TACGGGAGCTATTGTTGCGGTTGTTGTTGTTTCCGCGGTTATATTTGTCGCGCTGCTCGC 836
Query 834 TTTAGTATTGGTCATACGGAAGAGAAGACAATCGTACAAAACACTAAAACCTAAAACTGA 893
|||||||||||| || ||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 837 TTTAGTATTGGTTATTCGGAAGAGAAGACAATCATACAAAACACTAAAACCTCAAACTGA 896
Query 894 TGATGACATGACAAGTCCACAGTCTCTGCAATTTGATTTTATGACCCTCGAAGCGGCAAC 953
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TAATGACATGACAAGTCCACAGTCTCTGCAATTTGATTTTATGACCCTCGAAGCGGCAAC 956
Query 954 TGATAAATTTTCGAGGAATAACAAGCTAGGTAAAGGTGGGTTTGGTGAAGTTTACAAGGG 1013
||||||||||||| ||||||||||||||||| ||||||| || || ||| ||| |||||
Sbjct 957 TGATAAATTTTCGGGGAATAACAAGCTAGGTCAAGGTGGATTCGGCGAAATTTTTAAGGG 1016
Query 1014 AATGTTACCAAA-CGAAACAGAAGTTGCGGTGAAGCGGCTATCGAGTAA-TTCAGGACAA 1071
||| |||||||| | |||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1017 AATATTACCAAATC-AAACAGAAGTTGCGGTGAAGCGGCTATCGA-TAAATTCAGGACAA 1074
Query 1072 GGCACACAAGAGTTCAAGAACGAGGTTGTAATTGTGGCTAAGCTTCAACATAAGAATCTT 1131
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1075 GGCACACAAGAGTTCAAGAACGAGGTTGTAATTGTGGCTAAGCTTCAACACAGGAATCTT 1134
Query 1132 GTTAGGCTTCTTGGGTTTTGCTTAGAAAGAGATGAACAGATACTTGTCTACGAGTTTGTT 1191
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1135 GTTAGGCTTCTTGGGTTTTGCTTAGAAAGATATGAACAGATACTTGTCTACGAGTTTGTT 1194
Query 1192 CCCAACAAGAGCCTTAATTATTTCCTCTTTGGTAATAAACAAAAACACTTACTTGATCCA 1251
|||||||||||||||| ||||||||||||| | | | || || | |
Sbjct 1195 TCCAACAAGAGCCTTAACTATTTCCTCTTTG--A-T---C-----CA---AC---A---A 1234
Query 1252 ACCAAGAAGAGTCAGCTAGATTGGAAAAGACGGTACAACATCATAGGAGGGATTACGCGA 1311
| ||||||||||||||||||||||| ||| |||| |||||| |||||||||||||||
Sbjct 1235 A----GAAGAGTCAGCTAGATTGGAAAATACGATACAGCATCATTGGAGGGATTACGCGA 1290
Query 1312 GGGCTTCTCTATCTTCATCAAGACTCGCGGCTAACCATCATACACCGTGACATCAAAGCA 1371
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1291 GGGCTTCTCTATCTTCATCAAGACTCGCGGCTCACCATTATACACCGTGACATCAAAGCA 1350
Query 1372 AGTAACATTCTTTTAGATGCTGATATGAACCCTAAAATAGCGGATTTTGGAATGGCAAGG 1431
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 1351 AGTAACATTCTTTTAGATGCCGATATGAACCCTAAAATAGCGGATTTCGGAATCGCAAGA 1410
Query 1432 AATTTTAGAGTGGACCAAACTGAAGACAATACAAGAAGAGTTGTTGGAACTTTCGGTTAC 1491
|||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1411 AATTTTAGCGTGGACCAAACTGAAGACAATACAGGAAGAGTTGTTGGAACATTCGGTTAC 1470
Query 1492 ATGCCTCCAGAGTATGTGACGCATGGCCAGTTCTCTACCAAATCTGATGTTTATAGCTTT 1551
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1471 ATGCCTCCAGAGTATGTGACGCACGGCCAATTCTCTACCAAATCTGATGTTTATAGCTTT 1530
Query 1552 GGAGTATTGATTCTGGAGATTGTTTGTGGCAAGAAGAACAGCAGCTTCTATAAGATAGAT 1611
||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| | |
Sbjct 1531 GGAGTATTGATTCTGGAGATTATTTGTGGCAAGAAGAATAGCAGCTTCTACCAGATGGCT 1590
Query 1612 GATTCTGGTGGCAATTTGGTGACACATGTTTGGCGGCTTTGGAACAATGACT-CACCTTT 1670
||||||||||||||||||||||||||||||||| ||||||||||||| | || |||| ||
Sbjct 1591 GATTCTGGTGGCAATTTGGTGACACATGTTTGGAGGCTTTGGAACAACG-CTTCACCCTT 1649
Query 1671 AGATCTCATCGACCCTGCGATTGAGGAAAGCTGCGATAATGATAAAGTCATAAGATGTAT 1730
||||||||| ||||| |||||| ||||||||| |||||||||| |||||| ||||||||
Sbjct 1650 AGATCTCATAGACCCCGCGATTAAGGAAAGCTACGATAATGATGTAGTCATTAGATGTAT 1709
Query 1731 CCATATCGGACTTTTATGTGTTCAAGAAACTCCTGTAGATCGGCCAGAGATGTCTACAAT 1790
||||||||| |||||||||||||||||||||| | |||||| || ||||||||||| ||
Sbjct 1710 ACATATCGGAATTTTATGTGTTCAAGAAACTCCGGCAGATCGTCCGGAGATGTCTACGAT 1769
Query 1791 ATTTCAAATGCTTACTAATAGCTCCATTACTCTGCCTG 1828
|||||||||||||| ||||||| ||||||||| ||||
Sbjct 1770 CTTTCAAATGCTTACAAATAGCTTCATTACTCTACCTG 1807
Score = 71.3 bits (38), Expect = 3e-11
Identities = 43/45 (96%), Gaps = 2/45 (4%)
Strand=Plus/Plus
Query 1857 GAACAGATC-CAATTTAGACCCTTTAACTTATGGATCCGAGCTGG 1900
||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1807 GAACAGA-CACAATTTAGACCCTTTAACTTATGGATCCGAGCTGG 1850
Score = 56.5 bits (30), Expect = 7e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1940 GTGCGTCAATCACTAGAGTCACTCCTCGGT 1969
||||||||||||||||||||||||||||||
Sbjct 1850 GTGCGTCAATCACTAGAGTCACTCCTCGGT 1879
> Ahg895321 jgi|Araly1|895321|Al_scaffold_0006_3317
Length=1971
Score = 1495 bits (809), Expect = 0.0
Identities = 1087/1217 (89%), Gaps = 36/1217 (3%)
Strand=Plus/Plus
Query 759 AGATGG-GAAAACAATATCTACGGGAGCTATTGTTGC-AGTTGTTGTCTCCG-TGGTTAT 815
|||||| |||| ||| ||||| |||| |||||| || | | ||||| |||| | |||||
Sbjct 783 AGATGGCAAAAAAAAT-TCTACAGGAGTTATTGTGGCTA-TCGTTGTTTCCGCT-GTTAT 839
Query 816 ATTTGTAGTGCTGCTCGCTTTAGTATTGGTCATACGGAAGAGAAGACAATCGTACAAAAC 875
|| | |||||||||||||||| ||| || || ||||||||||| |||| ||| ||||
Sbjct 840 CTTCGCGGTGCTGCTCGCTTTAGGATTAGTTATTTGGAAGAGAAGAAAATCATACCAAAC 899
Query 876 ACTAAAACCTAAAACTGATGATGACATGACAAGTCCACAGTCTCTGCAATTTGATTTTAT 935
||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 ACTGAAACCTCAAACTGATGATGACATGATAAGTCCACAGTCTCTGCAATTTGATTTTGC 959
Query 936 GACCCTCGAAGCGGCAACTGATAAATTTTCGAGGAATAACAAGCTAGGTA-AAGGTGGGT 994
|| | ||||||||||| ||||| ||||||||||| ||||||||||| | |||| || |
Sbjct 960 AACAATTGAAGCGGCAACAGATAAGTTTTCGAGGAACAACAAGCTAGG-ACAAGGCGGAT 1018
Query 995 TTGGTGAAGTTTACAAGGGAATGTTACCAAACGAAACAGAAGTTGCGGTGAAGCGGCTAT 1054
| ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct 1019 TCGGTGAAGTTTACAAGGGAATGTTACCAAATGAAACAGAAATTGCGGTAAAGCGGCTAT 1078
Query 1055 CGAGTAATTCAGGACAAGGCACACAAGAGTTCAAGAACGAGGTTGTAATTGTGGCTAAGC 1114
| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1079 CAAGAAATTCAGGACAAGGCACACAAGAGTTCAAGAACGAGGTTGTGATTGTGGCTAAAC 1138
Query 1115 TTCAACATAAGAATCTTGTTAGGCTTCTTGGGTTTTGCTTAGAAAGAGATGAACAGATAC 1174
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTCAACACAAGAATCTTGTTAGGCTTCTTGGGTTTTGCTTAGAAAGAGATGAACAGATAC 1198
Query 1175 TTGTCTACGAGTTTGTTCCCAACAAGAGCCTTAATTATTTCCTCTTTGGTAATAAACAAA 1234
|||||||||||||||||||||||||||||| | | | | | | | | |
Sbjct 1199 TTGTCTACGAGTTTGTTCCCAACAAGAGCC-T--TGA-----T-TAT--T--T---C--- 1239
Query 1235 AACACTTACTTGATCCAACCAAGAAGAGTCAGCTAGATTGGAAAAGACGGTACAACATCA 1294
| | | |||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1240 --CTC-T--TTGATCCAACAAAGAAGACTCAGCTAGATTGGAAAAGACGGTACAACATCA 1294
Query 1295 TAGGAGGGATTACGCGAGGGCTTCTCTATCTTCATCAAGACTCGCGGCTAACCATCATAC 1354
||||||||||||||||||||||||| ||||||||||||||||| | || ||||||||||
Sbjct 1295 TAGGAGGGATTACGCGAGGGCTTCTATATCTTCATCAAGACTCAAGACTCACCATCATAC 1354
Query 1355 ACCGTGACATCAAAGCAAGTAACATTCTTTTAGATGCTGATATGAACCCTAAAATAGCGG 1414
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1355 ACCGTGACATCAAAGCAAGTAACATTCTTTTAGATGCCGATATGAACCCTAAAATAGCAG 1414
Query 1415 ATTTTGGAATGGCAAGGAATTTTAGAGTGGACCAAACTGAAGACAATACAAGAAGAGTTG 1474
|||| ||||||||||||||||| |||||||||||||||||||| |||||| | |||||||
Sbjct 1415 ATTTCGGAATGGCAAGGAATTTCAGAGTGGACCAAACTGAAGAAAATACAGGCAGAGTTG 1474
Query 1475 TTGGAACTTTCGGTTACATGCCTCCAGAGTATGTGACGCATGGCCAGTTCTCTACCAAAT 1534
||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1475 TTGGAACATTCGGTTACATGCCTCCAGAATATGTGACGCATGGCCAATTCTCTACCAAAT 1534
Query 1535 CTGATGTTTATAGCTTTGGAGTATTGATTCTGGAGATTGTTTGTGGCAAGAAGAACAGCA 1594
| ||||| |||||||| ||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1535 CCGATGTCTATAGCTTCGGAGTATTGATTCTGGAGATTATTTGTGGCAAGAAGAATAGCA 1594
Query 1595 GCTTCTATAAGATAGATGATTCTGGTGGCAATTTGGTGACACATGTTTGGCGGCTTTGGA 1654
|||||||| |||| ||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 1595 GCTTCTATCAGATGGATGATTCTGGGGGAAATTTGGTGACACATGTTTGGAGGCTTTGGA 1654
Query 1655 ACAATGACTCACCTTTAGATCTCATCGACCCTGCGATTGAGG-AAAGCTGCGATAATGAT 1713
||||||| |||||||||||||||||||||||||||||| ||| |||||| ||||||||||
Sbjct 1655 ACAATGATTCACCTTTAGATCTCATCGACCCTGCGATT-AGGGAAAGCTACGATAATGAT 1713
Query 1714 AAAGTCATAAGATGTATCCATATCGGACTTTTATGTGTTCAAGAAACTCCTG-TAGATCG 1772
||||||| |||||||||||||||||| |||||||||||||||||||||| | | |||||
Sbjct 1714 GAAGTCATTAGATGTATCCATATCGGAATTTTATGTGTTCAAGAAACTCCCGCT-GATCG 1772
Query 1773 GCCAGAGATGTCTACAATATTTCAAATGCTTACTAATAGCTCCATTACTCTGCCTGTGCC 1832
|| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1773 TCCGGAGATGTCTACAACCTTTCAAATGCTTACGAATAGCTCCATTACTCTGCCTGTGCC 1832
Query 1833 TCGACCACCTGGATTTTTCTTCAGGAACAGATCCAATTTAGACCCTTTAACTTATGGATC 1892
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1833 TCGCCCACCTGGATTTTTCTTCAGGAACAGGCCCAATTTAGACCCTTTAACTTATGGATC 1892
Query 1893 CGAGCTGGGGCAATCGAGCAGCAAATCTATTCCTTATACTATAGATAGTGCGTCAATCAC 1952
||||| |||||||| |||| || ||| |||||||| ||||||||||||||||||||||
Sbjct 1893 CGAGCCAGGGCAATCCAGCAACATGTCTGTTCCTTATTCTATAGATAGTGCGTCAATCAC 1952
Query 1953 TAGAGTCACTCCTCGGT 1969
|||||||||||||||||
Sbjct 1953 TAGAGTCACTCCTCGGT 1969
Score = 604 bits (327), Expect = 6e-172
Identities = 628/768 (82%), Gaps = 41/768 (5%)
Strand=Plus/Plus
Query 1 ATGTGTCTGCAA-AATCTCTTGTCAATCCTCTGTTTTGTCCTC-GCCATTAGCTTCGGCT 58
|||| |||| || || || || ||||| ||||||||| || || || |||| ||||| |
Sbjct 1 ATGTTTCTG-AACAAACTTTTTTCAATGCTCTGTTTTATCTTCATCC-TTAGTTTCGGTT 58
Query 59 ACGTGTCTGCACAAAAATGCGTG-GATTCAATGTTTTTCAGACCCAACGGTACTTATGAC 117
|| |||||||||||||| | | || ||||||||||||||||| || ||||||||||||
Sbjct 59 TTGTCTCTGCACAAAAATGTG-GAGAGTCAATGTTTTTCAGACCAAATGGTACTTATGAC 117
Query 118 ACAAACCGTCATCTCATTCTCTCAAAC-CTTGCTTCCAACGTGAGTTCTC--GA-GACGG 173
|| ||||||| |||| ||||||| ||| || ||||||||||| ||||||| | || |
Sbjct 118 ACTAACCGTCGTCTCGTTCTCTC-AACTCTAGCTTCCAACGTCAGTTCTCAAAACAACCG 176
Query 174 CTACTACAACGGT-TCTGTCGGTGAAGG-CCCTGATAGAATCTATGCGTTAGGTCTCTGT 231
|| ||||||| || || ||||||||||| | || || |||||||| ||||| ||||||
Sbjct 177 CTTCTACAAC-GTCTCAGTCGGTGAAGGAGCTTG-GAGGATCTATGCTTTAGGCCTCTGT 234
Query 232 ATCCCAGGGACTGATCCAAAGGTCTGTGATGATTGTATGCAAATCGCATCTACG--GGTA 289
|||||||||||||||||||||||||||| || ||||| ||| ||||||| | | |||
Sbjct 235 ATCCCAGGGACTGATCCAAAGGTCTGTGCCGACTGTATCCAACTCGCATC-A-GAAGGTT 292
Query 290 TATTACAAAACTGCCCGAACCAGACCGACTCATACGACTGGAGATCCCAGAAAACACTCT 349
||||||||||||| ||||||||||||||||||| |||||||||| | | || || ||||
Sbjct 293 TATTACAAAACTGTCCGAACCAGACCGACTCATTCGACTGGAGAGGCAACAAGACGCTCT 352
Query 350 GTTTCGTTCGTTACTCCAACAGCTCGTTTTTCAACAAAATGGATCTAGAGCCGACAATGG 409
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 353 GTTTCGTTCGTTACTCCAACAGCTCGTTTTTCAACAAGATGGATCTAGAGCCGACA--G- 409
Query 410 TTATAGGAGATCTAAATAGTGGACTA-TTCCAAGGGGACCTTGCAGCTTATA-CAAGAAC 467
| | | || | | | || | | | || ||||| || || | |||||| || ||||
Sbjct 410 T-A-AC-AGTTTTCAGTACTAAAA-AGTTTCAAGGTAACTTTAAAACTTATAACA-GAAC 464
Query 468 ATGGGAGGAGTTCATGAACTCTATGATCACCAGAGTCGGTCGAA-CTCGTTACCTGGCCG 526
|||||| | | ||||||||| |||||||||| ||||||||| || ||| ||||| ||||
Sbjct 465 ATGGGACGCGCTCATGAACTTTATGATCACCCGAGTCGGTC-AATCTCAATACCTTGCCG 523
Query 527 ATATATCCCCTCGGATAGGTTCTGCTCGTATATATGCGCTGATGCAATGTATTC-GAGGG 585
| ||||||||||| ||||||| || ||||||||| | |||||||| ||||||| | |||
Sbjct 524 AAATATCCCCTCGAATAGGTTTTGATCGTATATACACTCTGATGCAGTGTATTCCG-GGG 582
Query 586 ATATCCTCTATGGAATGTGAAACTTGTATT-CGAGATAA-TGTGCGTA-TGTACCAGAGT 642
||||||||| || |||||||| |||||| | || ||| ||| |||| | ||||||||
Sbjct 583 CTATCCTCTAACGACTGTGAAACCTGTATTAC-AG-TAAGTGTCCGTAAT-TACCAGAGA 639
Query 643 TGCTGCAATGGGTTCATAGGAGGAA-CTATTCGCAAGCCGGTCTGCTTTTTCAGGTGGGA 701
||||||||||| ||| |||| ||| | |||||||||| |||||||||||| |||||||
Sbjct 640 TGCTGCAATGGCTTCGTAGGTGGAGTCG-TTCGCAAGCCTGTCTGCTTTTTCCGGTGGGA 698
Query 702 TGGTTCTGAATATCTTGGTGCCTTTGGTGACACGCCATCGCTACCTCC 749
||||| |||||||||||||||||||||| |||||| ||| |||||||
Sbjct 699 TGGTTATGAATATCTTGGTGCCTTTGGTAACACGCAATCATTACCTCC 746
> Ahg489974 jgi|Araly1|489974|fgenesh2_kg.6__3108__AT4G11460.1
Length=2016
Score = 750 bits (406), Expect = 0.0
Identities = 715/860 (83%), Gaps = 38/860 (4%)
Strand=Plus/Plus
Query 1022 CAAACGAAACAGAAGTTGCGGTGAAGCGGCTATCGAGTAA-TTCAGGA-CAAGG-CACAC 1078
|||| | ||| |||||||| || ||| |||| || || || |||| || ||||| | ||
Sbjct 1082 CAAATGGAACTGAAGTTGCAGTTAAGAGGCTGTCAAG-AACTTCA-GATCAAGGTGA-AC 1138
Query 1079 AAGAGTTCAAGAACGAGGTTG-TAATTGTGGCTAAGCTTCAACATAAGAATCTTGTTAGG 1137
|||||||||||||||| || | | || || |||||||| | |||||| ||||||
Sbjct 1139 TGGAGTTCAAGAACGAGG-TGCTTCTGGTAGCAAAGCTTCAGCCCCGGAATCTCGTTAGG 1197
Query 1138 CTTCTTGGGTTTTGCT-TAG-AAAGAGATGAACAGATACTTGTCTACGAGTTTGTTCCCA 1195
|||| | ||||||||| | | || |||| ||| ||||||| |||| |||||||||||||
Sbjct 1198 CTTC-TCGGTTTTGCTCT-GCAAGGAGAAGAAAAGATACTCGTCTTTGAGTTTGTTCCCA 1255
Query 1196 ACAAGAGCCTTAATTATTTCCTCTTTGGTAATAAACAAAAACACTTACTTGATCCAACCA 1255
|||||||||| ||||||||||||| |||| | || || | ||||| |
Sbjct 1256 ACAAGAGCCTCGATTATTTCCTCTTCGGTAGT----------AC-TA----ACCCAACAA 1300
Query 1256 AGAAGAGTCAGCTAGATTGGAAAAGACGGTACAACATCATAGGAGGGATTACGCGAGGGC 1315
||||| ||||||| || |||| |||| ||||||||||||| ||||||||||| ||||||
Sbjct 1301 AGAAGGGTCAGCTGGACTGGACAAGATGGTACAACATCATCGGAGGGATTACACGAGGGA 1360
Query 1316 TTCTCTATCTTCATCAAGACTCGCGGCTAACCATCATACACCGTGACATCAAAGCAAGTA 1375
||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||
Sbjct 1361 TTCTCTATCTTCATCAAGACTCGAGGCTCACCATCATACACCGTGACATCAAAGCGAGTA 1420
Query 1376 ACATTCTTTTAGATGCTGATATGAACCCTAAAATAGCGGATTTTGGAATGGCAAGGAATT 1435
|||||||||||||||| |||||||||| |||||||||||||| | |||||| |||||||
Sbjct 1421 ACATTCTTTTAGATGCCAATATGAACCCGAAAATAGCGGATTTCGAAATGGCTAGGAATT 1480
Query 1436 TTAGAG-TGGACCAAACTGAAGACAATACAAGAAGAGTTGTTGGAACTTTCGGTTACATG 1494
| |||| | | ||||||||||||| |||| |||||||||||||||| ||||||||||||
Sbjct 1481 TCAGAGAT-CATCAAACTGAAGACAGTACAGGAAGAGTTGTTGGAACCTTCGGTTACATG 1539
Query 1495 CCTCCAGAGTATGTGACGCATGGCCAGTTCTCTACCAAATCTGATGTTTATAGCTTTGGA 1554
|||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||| |||
Sbjct 1540 CCTCCAGAATATGTGACGCATGGCCAATTCTCTACCAAATCCGATGTCTATAGCTTCGGA 1599
Query 1555 GTATTGATTCTGGAGATTGTTTGTGGCAAGAAGAACAGCAGCTTCTATAAGATAGATGAT 1614
||||||||||||||||||||| |||||| |||||| |||||||||||| |||| |||| |
Sbjct 1600 GTATTGATTCTGGAGATTGTTAGTGGCAGGAAGAATAGCAGCTTCTATCAGATGGATGGT 1659
Query 1615 TCTGGTGGCAATTTGGTGACACATGTTTGGCGGCTTTGGAACAATGACT-CA-CCTTTAG 1672
|||| | |||| ||||| ||| |||||||| | |||||||||| ||| | || || || |
Sbjct 1660 TCTGTTTGCAACTTGGTCACATATGTTTGGAGACTTTGGAACACTGA-TACATCC-TTGG 1717
Query 1673 ATCTCATCGACCCTGCGATTGA-GGAAAGCTGCGATAATGATAAAGTCA-TAAGATGTAT 1730
| ||||| || || |||||| | |||||| | || || ||| |||||| | ||||| ||
Sbjct 1718 AGCTCATAGATCCGGCGATT-AGGGAAAGTTATGAGAAAGATGAAGTCACT-AGATGCAT 1775
Query 1731 CCATATCGGACTTTTATGTGTTCAAGAAACTCCTGTAGATCGGCCAGAGATGTCTACAAT 1790
|||||||||||||||||| |||||||||| ||||| | |||| |||| ||||||||| |
Sbjct 1776 CCATATCGGACTTTTATGCGTTCAAGAAAATCCTGCAAATCGCCCAGCTATGTCTACAGT 1835
Query 1791 ATTTCAAATGCTTACTAATAGCTCCATTACTCTGCCTGTGCCTCGACCACCTGGATTTTT 1850
||| || ||||| || ||||||||||||||||| ||| |||| |||||||||||||||
Sbjct 1836 ATTCCAGATGCTCACCAATAGCTCCATTACTCTAAATGTCCCTCAACCACCTGGATTTTT 1895
Query 1851 CTTCAGGAACAGATCC-AAT 1869
||||||||||||| || |||
Sbjct 1896 CTTCAGGAACAGACCCGAAT 1915
> Ahg895324 jgi|Araly1|895324|Al_scaffold_0006_3320
Length=2007
Score = 736 bits (398), Expect = 0.0
Identities = 890/1120 (79%), Gaps = 64/1120 (6%)
Strand=Plus/Plus
Query 755 CTCCAGATGGGAAAACAATATCTACGGGAGCTATTGTTG-C-AGTTGT-TGTCTCCGTGG 811
|||||||||| ||||| || ||||| ||| ||| | || | | |||| | |||||||||
Sbjct 824 CTCCAGATGGCAAAACGATTTCTACAGGAATTATAG-TGTCTA-TTGTCT-TCTCCGTGG 880
Query 812 TTATATTTGTAGTGCTGCTCGCTTTAGTATTGGTCATACGGAAGAGAAGACAATCGTACA 871
| ||||| || | |||| | ||| ||| ||| | | ||||||||||||| | ||||
Sbjct 881 TCATATTCGTGGCGCTGTTTGCTCTAGGGTTGATTTTTTTGAAGAGAAGACAAACATACA 940
Query 872 AAACACTAAAACCTAAAACTGATGATGACATGACAAGTCCACAGTCTCTGCAATTTGATT 931
|| || |||| | | ||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct 941 AAGCATTAAAGCTTGAAACTAATGATGATATTACAAGTCCACAGTCTCTGCAATTTGATT 1000
Query 932 TTATGACCCTCGAAGCGGCAACTGATAAATTTTCGAGGAATAACAA-GCTAGGTAAAGGT 990
| | ||| | |||||||||||||||||||||||| |||| ||||| | | ||| |||||
Sbjct 1001 TCAAGACAATTGAAGCGGCAACTGATAAATTTTCGGGGAACAACAAAG-TCGGTCAAGGT 1059
Query 991 GGGTTTGGTGAAGTTTACAAGGGAATG-TTACCAAACGAAACAGAAGTTGCGGTGAAGCG 1049
|| |||||||||||||||||||||| | ||| || | | ||| |||||||| ||||||||
Sbjct 1060 GGATTTGGTGAAGTTTACAAGGGAA-GATTATCAGATGGAACTGAAGTTGCCGTGAAGCG 1118
Query 1050 GCTATCGAGTAATTCAGGACAAGGCACACAAGAGTTCAAGAACGAGGTTGTAATTGTGGC 1109
||||| | ||||||||||||||| |||||||||| ||||| |||||||| |||||||
Sbjct 1119 ACTATCAAAAAATTCAGGACAAGGCTCACAAGAGTTTAAGAATGAGGTTGTTCTTGTGGC 1178
Query 1110 TAAGCTTCAACATAAGAA-TCTTGTTAGGCTTCTTGGGTTTTGCTTAGAAAGAGATGAAC 1168
||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 1179 GAAGCTTCAACATA-GAAATCTTGTTAGGCTTCTTGGGTTTTGCTTGGAAGGAGAAGAAC 1237
Query 1169 AGATACTTGTCTACGAGTTTGTTCCCAACAAGAGCCTTAATTATTTCCTCTTTGGTAATA 1228
||||||||||||| |||||||||||||||||||||||| ||||||||||||| | |
Sbjct 1238 AGATACTTGTCTATGAGTTTGTTCCCAACAAGAGCCTTGATTATTTCCTCTTCG--ACCC 1295
Query 1229 AACAAAAACACTTACTTGATCCAACCAAGAAGAGTCAGCTAGATTGGAAAAGACGGTACA 1288
||||||| | | | || | ||| | || | | | |||| |||||||||
Sbjct 1296 AACAAAA-CG-T--C--GA-C-AACTA-GAT---T--G---G---GGAA--GACGGTACA 1333
Query 1289 ACATCATAGGAGGGATTACGCGAGGGCTTCTCTATCTTCATCAAGACTCGCGGCTAACCA 1348
| ||||| ||||||||| | |||||| ||||||||||||||||||| || ||||| || |
Sbjct 1334 ATATCATTGGAGGGATTGCTCGAGGGATTCTCTATCTTCATCAAGATTCACGGCTCACAA 1393
Query 1349 TCATACACCGTGA-CATCAAAGCAAGTAACATTCTTTTAGATGCTGATATGAACCCTAAA 1407
||||||||||||| | ||||||| || ||||||||| |||||| |||||||||||| |||
Sbjct 1394 TCATACACCGTGATC-TCAAAGCGAGCAACATTCTTCTAGATGATGATATGAACCCGAAA 1452
Query 1408 ATAGCGGATTTTGGAATGGCAAGGAATTTTAG-AGTGGACCAAACT-GAAGACAATACAA 1465
|||||||||||||| |||||||||||||| | | |||| |||||| || | |||||| |
Sbjct 1453 ATAGCGGATTTTGGCATGGCAAGGAATTTCGGGA-TGGAGCAAACTCGA-GCCAATACTA 1510
Query 1466 G-AAGAGTTGTTGGAACTTTCGGTTACATGCCTCCAGAGTATGTGACGCATGGCCAGTTC 1524
| || | | | |||||| |||||||||||| |||| |||||||||| ||| || || ||
Sbjct 1511 GCAAAA-TAGCTGGAACCTTCGGTTACATGGCTCCCGAGTATGTGATGCACGGTCAATTT 1569
Query 1525 TCTACCAAATCTGATGTTTATAGCTTTGGAGTATTGATTCTGGAGATTGTTTGTGGCAAG 1584
|| | ||||||||| | |||||||| ||||| ||| |||| |||||| | |||| |||
Sbjct 1570 TCCATGAAATCTGATATCTATAGCTTCGGAGTGTTGGTTCTTGAGATTATAAGTGGTAAG 1629
Query 1585 AAGAACAGCAGCTTCTATAAGAT-AGATG-ATTCTGGTGGCAATTTGGTGACACATGTTT 1642
| ||| || ||||||||| | || ||||| || ||| ||||||||| || ||||||| ||
Sbjct 1630 ATGAATAGTAGCTTCTATCA-ATCAGATGGAT-CTGCTGGCAATTTAGTAACACATGCTT 1687
Query 1643 GGCGGCTTTGGA-ACAATGACTCACCTTTAGATCTCATCGACCCTG-CGATTGA-GGAAA 1699
|| | || |||| | || | || |||||||| ||| | ||| | | | ||||| || ||
Sbjct 1688 GGAGACTATGGAGAAAAGGT-TCGCCTTTAGAACTCTTGGACTC-GACTATTGAAGGGAA 1745
Query 1700 GC-TGCGATAATGATAAAGTCATAAGATGTATCCATATCG-GACTTTTATGTGTTCAAGA 1757
| | | | ||| |||| | |||||| || ||||||| | ||||||||||| |||||
Sbjct 1746 TTAT-C-AGAGCGATGAAGTTACAAGATGCATTCATATCGCG-CTTTTATGTGTGCAAGA 1802
Query 1758 A-ACTCCTGTAGATCGGCCAGA-GATGTCTACAAT-ATTTCAAATGCTTACTAATAGCTC 1814
| ||||| | |||| ||| | |||||||||||| |||| | |||| |||| || | |
Sbjct 1803 GGA-TCCTGAAAATCGTCCA-ATGATGTCTACAATTATTTTGA-TGCTCACTAGTAACAC 1859
Query 1815 CATTACTCTGCCTGTGCCTCGACCACCTGGATTTTTCTTC 1854
|| ||| | | |||||||| |||||| |||||||||
Sbjct 1860 AATCACTTTACAAGTGCCTCGTGCACCTGCTTTTTTCTTC 1899
Score = 339 bits (183), Expect = 6e-92
Identities = 331/400 (83%), Gaps = 19/400 (5%)
Strand=Plus/Plus
Query 14 ATCTCTTGTCAATCCTCTG--TT-TTGTCCTCGCCATTAGCTTCGGCTACGTGTCTGCAC 70
||||||||||||||||||| || || || | | | |||||||||||||||| ||||| |
Sbjct 14 ATCTCTTGTCAATCCTCTGTTTTATTATCTTTGTCTTTAGCTTCGGCTACGTATCTGCTC 73
Query 71 AAAAATGCGTG-GAT--TCAATGTTTTTCAGACCCAACGGTACTTATGACACAAACCGTC 127
||||||| | | ||| || ||||||||||||| |||||||||||||||||||||||||
Sbjct 74 AAAAATGTG-GAGATAGTC--TGTTTTTCAGACCAAACGGTACTTATGACACAAACCGTC 130
Query 128 ATCTCATTCTCTCAAAC-CTTGCTTCCAACGTGAGTTCTCGAGACGGCTACTACAACGGT 186
||| ||||||| ||| ||||| |||||||| |||||||||||||||| || ||| ||
Sbjct 131 GTCTTGTTCTCTC-AACTCTTGCCTCCAACGTCAGTTCTCGAGACGGCTTCTTCAA-TGT 188
Query 187 -TCTGTCGGTGAAGGCCCTGATAGAATCTATGCGTTAGGTCTCTGTATCCCAGGGACTGA 245
|| || ||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 189 CTCGGTTGGTGAAGGCTCTGAAAGAATCTATGCTTTAGGCCTCTGTATCCCAGGGACTGA 248
Query 246 TCCAAAGGTCTGTGATGATTGTATGCAAATCGCATCT-ACGGGTATATTACAA-AACTGC 303
||||||||| ||| || ||||| ||| ||| ||| |||| | | ||| || || ||
Sbjct 249 TCCAAAGGTGTGTTCCGAGTGTATCCAACCCGCGTCTGACGGTT-TGTTA-AAGAATTGT 306
Query 304 CCGAACCAGACCGACTCATACGACTGGAGATCCCAGAAAACACTCTGTTTCGTTCGTTAC 363
||||| ||||||||||||| ||||||||| || | || || |||||||| ||||||||
Sbjct 307 CCGAATCAGACCGACTCATGGGACTGGAGAGCCAACAAGACGCTCTGTTTTGTTCGTTAT 366
Query 364 TCCAA-CAGCTCGTTTTTCAACAAAATGGATCTAGAGCCG 402
||||| | | |||||||||||| | || ||||||||||||
Sbjct 367 TCCAATCGG-TCGTTTTTCAACGAGATTGATCTAGAGCCG 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74085526525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5