BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11480.1 Length=1971 Score E Sequences producing significant alignments: (Bits) Value Ahg489975 jgi|Araly1|489975|fgenesh2_kg.6__3109__AT4G11480.1 2547 0.0 Ahg895321 jgi|Araly1|895321|Al_scaffold_0006_3317 1495 0.0 Ahg489974 jgi|Araly1|489974|fgenesh2_kg.6__3108__AT4G11460.1 750 0.0 Ahg895324 jgi|Araly1|895324|Al_scaffold_0006_3320 736 0.0 > Ahg489975 jgi|Araly1|489975|fgenesh2_kg.6__3109__AT4G11480.1 Length=1881 Score = 2547 bits (1379), Expect = 0.0 Identities = 1692/1838 (92%), Gaps = 41/1838 (2%) Strand=Plus/Plus Query 1 ATGTGTCTGCAAAATCTCTTGTCAATCCTCTGTTTTGTCCTCGCCATTAGCTTCGGCTAC 60 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTCTGCACAATCTCTTGTCAATCCTCTGTTTTGTCCTCGCCATTAGCTTCGGCTAC 60 Query 61 GTGTCTGCACAAAAATGCGTGGATTCAATGTTTTTCAGACCCAACGGTACTTATGACACA 120 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 61 GTGTCTGCACAAAAATGTGTGGACTCAATGTTTTTCAGACCCAACGGTACTTATGACACA 120 Query 121 AACCGTCATCTCATTCTCTCAAAC-CTTGCTTCCAACGTGAGTTCTCGAGACGGCTACTA 179 ||||||| |||||||||||| ||| |||||||||||||||||| | ||||| |||||||| Sbjct 121 AACCGTCGTCTCATTCTCTC-AACTCTTGCTTCCAACGTGAGTACACGAGATGGCTACTA 179 Query 180 CAACGGTTCTGTCGGTGAAGGCCCTGATAGAATCTATGCGTTAGGTCTCTGTATCCCAGG 239 ||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||||| | Sbjct 180 CAACGGTTCGGTCGGTGAAGGCCCTGAAAAAATCTATGCCTTAGGTCTCTGTATCCCAAG 239 Query 240 GACTGATCCAAAGGTCTGTGATGATTGTATGCAAATCGCATCTACGGGTATATTACAAAA 299 ||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 240 GACTGATCCAAAGGTCTGTTCTGATTGTATCCAAATCGCATCTACGGGTTTATTACAAAA 299 Query 300 CTGCCCGAACCAGACCGACTCATACGACTGGAGATCCCAGAAAACACTCTGTTTCGTTCG 359 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 300 CTGCCCGAACCAGACCGACTCTTACGACTGGAGATCCCAGAAAACACTCTGTTTCGTTCG 359 Query 360 TTACTCCAACAGCTCGTTTTTCAACAAAATGGATCTAGAGCCGACAATGGTTATAGGAGA 419 |||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| Sbjct 360 TTACTCCAACAGCTCGTTTTCCAACAAAATGGATCTAGAGCCGACAATGATAATAGGAGA 419 Query 420 TCTAAATAGTGGACTATTCCAAGGGGACCTTGCAGCTTATACAAGAACATGGGAGGAGTT 479 ||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| ||| Sbjct 420 TCTAAATAGTGGACTATTCCAAGGGAACCTAACAGCTTATTCAAGAACATGGGAGGTGTT 479 Query 480 CATGAACTCTATGATCACCAGAGTCGGTCGAACTCGTTACCTGGCCGATATATCCCCTCG 539 |||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 480 CATGAAATCTATGATCACCCGAGTCGGTCGAACTCGTTACCTGGCCGATATTTCCCCTCG 539 Query 540 GATAGGTTCTGCTCGTATATATGCGCTGATGCAATGTATT-CGAGGGATATCCTCTATGG 598 |||||| |||||||||||||| |||||||||||||||||| || |||||||||||| ||| Sbjct 540 GATAGGCTCTGCTCGTATATACGCGCTGATGCAATGTATTCCG-GGGATATCCTCTTTGG 598 Query 599 AATGT-GAAACTTGTATTCGAGATAATGTGCGTATGTACCAGAGTTGCTGCAATGGGTTC 657 ||||| |||| ||||||||| || |||||||| |||||||||| |||||||||||||||| Sbjct 599 AATGTGGAAA-TTGTATTCGGGAAAATGTGCGGATGTACCAGAATTGCTGCAATGGGTTC 657 Query 658 ATAGGAGGAACTATTCGCAAGCCGGTCTGCTTTTTCA-GGTGGGATGGTTCTGAATATCT 716 ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 658 ATAGGAGGAACTATTCGCAAGCCGGTCTGCTTTTT-ACGGTGGGATGGTTCTGAATATCT 716 Query 717 TGGTGCCTTTGGTGACACGCCATCGCTACCTCCACCATCTCCAGATGGGAAAACAATATC 776 |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||| Sbjct 717 TGGTGCCTTTGGTGACACGCCATCGCTAACTCCATCTTCTCCAGATGGGAAAACAATATC 776 Query 777 TACGGGAGCTATTGTTGC---AGTTGTTGTCTCCGTGGTTATATTTGTAGTGCTGCTCGC 833 |||||||||||||||||| |||||||| |||| |||||||||||| | ||||||||| Sbjct 777 TACGGGAGCTATTGTTGCGGTTGTTGTTGTTTCCGCGGTTATATTTGTCGCGCTGCTCGC 836 Query 834 TTTAGTATTGGTCATACGGAAGAGAAGACAATCGTACAAAACACTAAAACCTAAAACTGA 893 |||||||||||| || ||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 837 TTTAGTATTGGTTATTCGGAAGAGAAGACAATCATACAAAACACTAAAACCTCAAACTGA 896 Query 894 TGATGACATGACAAGTCCACAGTCTCTGCAATTTGATTTTATGACCCTCGAAGCGGCAAC 953 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 TAATGACATGACAAGTCCACAGTCTCTGCAATTTGATTTTATGACCCTCGAAGCGGCAAC 956 Query 954 TGATAAATTTTCGAGGAATAACAAGCTAGGTAAAGGTGGGTTTGGTGAAGTTTACAAGGG 1013 ||||||||||||| ||||||||||||||||| ||||||| || || ||| ||| ||||| Sbjct 957 TGATAAATTTTCGGGGAATAACAAGCTAGGTCAAGGTGGATTCGGCGAAATTTTTAAGGG 1016 Query 1014 AATGTTACCAAA-CGAAACAGAAGTTGCGGTGAAGCGGCTATCGAGTAA-TTCAGGACAA 1071 ||| |||||||| | |||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1017 AATATTACCAAATC-AAACAGAAGTTGCGGTGAAGCGGCTATCGA-TAAATTCAGGACAA 1074 Query 1072 GGCACACAAGAGTTCAAGAACGAGGTTGTAATTGTGGCTAAGCTTCAACATAAGAATCTT 1131 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1075 GGCACACAAGAGTTCAAGAACGAGGTTGTAATTGTGGCTAAGCTTCAACACAGGAATCTT 1134 Query 1132 GTTAGGCTTCTTGGGTTTTGCTTAGAAAGAGATGAACAGATACTTGTCTACGAGTTTGTT 1191 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1135 GTTAGGCTTCTTGGGTTTTGCTTAGAAAGATATGAACAGATACTTGTCTACGAGTTTGTT 1194 Query 1192 CCCAACAAGAGCCTTAATTATTTCCTCTTTGGTAATAAACAAAAACACTTACTTGATCCA 1251 |||||||||||||||| ||||||||||||| | | | || || | | Sbjct 1195 TCCAACAAGAGCCTTAACTATTTCCTCTTTG--A-T---C-----CA---AC---A---A 1234 Query 1252 ACCAAGAAGAGTCAGCTAGATTGGAAAAGACGGTACAACATCATAGGAGGGATTACGCGA 1311 | ||||||||||||||||||||||| ||| |||| |||||| ||||||||||||||| Sbjct 1235 A----GAAGAGTCAGCTAGATTGGAAAATACGATACAGCATCATTGGAGGGATTACGCGA 1290 Query 1312 GGGCTTCTCTATCTTCATCAAGACTCGCGGCTAACCATCATACACCGTGACATCAAAGCA 1371 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1291 GGGCTTCTCTATCTTCATCAAGACTCGCGGCTCACCATTATACACCGTGACATCAAAGCA 1350 Query 1372 AGTAACATTCTTTTAGATGCTGATATGAACCCTAAAATAGCGGATTTTGGAATGGCAAGG 1431 |||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| Sbjct 1351 AGTAACATTCTTTTAGATGCCGATATGAACCCTAAAATAGCGGATTTCGGAATCGCAAGA 1410 Query 1432 AATTTTAGAGTGGACCAAACTGAAGACAATACAAGAAGAGTTGTTGGAACTTTCGGTTAC 1491 |||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 1411 AATTTTAGCGTGGACCAAACTGAAGACAATACAGGAAGAGTTGTTGGAACATTCGGTTAC 1470 Query 1492 ATGCCTCCAGAGTATGTGACGCATGGCCAGTTCTCTACCAAATCTGATGTTTATAGCTTT 1551 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1471 ATGCCTCCAGAGTATGTGACGCACGGCCAATTCTCTACCAAATCTGATGTTTATAGCTTT 1530 Query 1552 GGAGTATTGATTCTGGAGATTGTTTGTGGCAAGAAGAACAGCAGCTTCTATAAGATAGAT 1611 ||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| | | Sbjct 1531 GGAGTATTGATTCTGGAGATTATTTGTGGCAAGAAGAATAGCAGCTTCTACCAGATGGCT 1590 Query 1612 GATTCTGGTGGCAATTTGGTGACACATGTTTGGCGGCTTTGGAACAATGACT-CACCTTT 1670 ||||||||||||||||||||||||||||||||| ||||||||||||| | || |||| || Sbjct 1591 GATTCTGGTGGCAATTTGGTGACACATGTTTGGAGGCTTTGGAACAACG-CTTCACCCTT 1649 Query 1671 AGATCTCATCGACCCTGCGATTGAGGAAAGCTGCGATAATGATAAAGTCATAAGATGTAT 1730 ||||||||| ||||| |||||| ||||||||| |||||||||| |||||| |||||||| Sbjct 1650 AGATCTCATAGACCCCGCGATTAAGGAAAGCTACGATAATGATGTAGTCATTAGATGTAT 1709 Query 1731 CCATATCGGACTTTTATGTGTTCAAGAAACTCCTGTAGATCGGCCAGAGATGTCTACAAT 1790 ||||||||| |||||||||||||||||||||| | |||||| || ||||||||||| || Sbjct 1710 ACATATCGGAATTTTATGTGTTCAAGAAACTCCGGCAGATCGTCCGGAGATGTCTACGAT 1769 Query 1791 ATTTCAAATGCTTACTAATAGCTCCATTACTCTGCCTG 1828 |||||||||||||| ||||||| ||||||||| |||| Sbjct 1770 CTTTCAAATGCTTACAAATAGCTTCATTACTCTACCTG 1807 Score = 71.3 bits (38), Expect = 3e-11 Identities = 43/45 (96%), Gaps = 2/45 (4%) Strand=Plus/Plus Query 1857 GAACAGATC-CAATTTAGACCCTTTAACTTATGGATCCGAGCTGG 1900 ||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1807 GAACAGA-CACAATTTAGACCCTTTAACTTATGGATCCGAGCTGG 1850 Score = 56.5 bits (30), Expect = 7e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1940 GTGCGTCAATCACTAGAGTCACTCCTCGGT 1969 |||||||||||||||||||||||||||||| Sbjct 1850 GTGCGTCAATCACTAGAGTCACTCCTCGGT 1879 > Ahg895321 jgi|Araly1|895321|Al_scaffold_0006_3317 Length=1971 Score = 1495 bits (809), Expect = 0.0 Identities = 1087/1217 (89%), Gaps = 36/1217 (3%) Strand=Plus/Plus Query 759 AGATGG-GAAAACAATATCTACGGGAGCTATTGTTGC-AGTTGTTGTCTCCG-TGGTTAT 815 |||||| |||| ||| ||||| |||| |||||| || | | ||||| |||| | ||||| Sbjct 783 AGATGGCAAAAAAAAT-TCTACAGGAGTTATTGTGGCTA-TCGTTGTTTCCGCT-GTTAT 839 Query 816 ATTTGTAGTGCTGCTCGCTTTAGTATTGGTCATACGGAAGAGAAGACAATCGTACAAAAC 875 || | |||||||||||||||| ||| || || ||||||||||| |||| ||| |||| Sbjct 840 CTTCGCGGTGCTGCTCGCTTTAGGATTAGTTATTTGGAAGAGAAGAAAATCATACCAAAC 899 Query 876 ACTAAAACCTAAAACTGATGATGACATGACAAGTCCACAGTCTCTGCAATTTGATTTTAT 935 ||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 900 ACTGAAACCTCAAACTGATGATGACATGATAAGTCCACAGTCTCTGCAATTTGATTTTGC 959 Query 936 GACCCTCGAAGCGGCAACTGATAAATTTTCGAGGAATAACAAGCTAGGTA-AAGGTGGGT 994 || | ||||||||||| ||||| ||||||||||| ||||||||||| | |||| || | Sbjct 960 AACAATTGAAGCGGCAACAGATAAGTTTTCGAGGAACAACAAGCTAGG-ACAAGGCGGAT 1018 Query 995 TTGGTGAAGTTTACAAGGGAATGTTACCAAACGAAACAGAAGTTGCGGTGAAGCGGCTAT 1054 | ||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| Sbjct 1019 TCGGTGAAGTTTACAAGGGAATGTTACCAAATGAAACAGAAATTGCGGTAAAGCGGCTAT 1078 Query 1055 CGAGTAATTCAGGACAAGGCACACAAGAGTTCAAGAACGAGGTTGTAATTGTGGCTAAGC 1114 | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 1079 CAAGAAATTCAGGACAAGGCACACAAGAGTTCAAGAACGAGGTTGTGATTGTGGCTAAAC 1138 Query 1115 TTCAACATAAGAATCTTGTTAGGCTTCTTGGGTTTTGCTTAGAAAGAGATGAACAGATAC 1174 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 TTCAACACAAGAATCTTGTTAGGCTTCTTGGGTTTTGCTTAGAAAGAGATGAACAGATAC 1198 Query 1175 TTGTCTACGAGTTTGTTCCCAACAAGAGCCTTAATTATTTCCTCTTTGGTAATAAACAAA 1234 |||||||||||||||||||||||||||||| | | | | | | | | | Sbjct 1199 TTGTCTACGAGTTTGTTCCCAACAAGAGCC-T--TGA-----T-TAT--T--T---C--- 1239 Query 1235 AACACTTACTTGATCCAACCAAGAAGAGTCAGCTAGATTGGAAAAGACGGTACAACATCA 1294 | | | |||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 1240 --CTC-T--TTGATCCAACAAAGAAGACTCAGCTAGATTGGAAAAGACGGTACAACATCA 1294 Query 1295 TAGGAGGGATTACGCGAGGGCTTCTCTATCTTCATCAAGACTCGCGGCTAACCATCATAC 1354 ||||||||||||||||||||||||| ||||||||||||||||| | || |||||||||| Sbjct 1295 TAGGAGGGATTACGCGAGGGCTTCTATATCTTCATCAAGACTCAAGACTCACCATCATAC 1354 Query 1355 ACCGTGACATCAAAGCAAGTAACATTCTTTTAGATGCTGATATGAACCCTAAAATAGCGG 1414 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1355 ACCGTGACATCAAAGCAAGTAACATTCTTTTAGATGCCGATATGAACCCTAAAATAGCAG 1414 Query 1415 ATTTTGGAATGGCAAGGAATTTTAGAGTGGACCAAACTGAAGACAATACAAGAAGAGTTG 1474 |||| ||||||||||||||||| |||||||||||||||||||| |||||| | ||||||| Sbjct 1415 ATTTCGGAATGGCAAGGAATTTCAGAGTGGACCAAACTGAAGAAAATACAGGCAGAGTTG 1474 Query 1475 TTGGAACTTTCGGTTACATGCCTCCAGAGTATGTGACGCATGGCCAGTTCTCTACCAAAT 1534 ||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 1475 TTGGAACATTCGGTTACATGCCTCCAGAATATGTGACGCATGGCCAATTCTCTACCAAAT 1534 Query 1535 CTGATGTTTATAGCTTTGGAGTATTGATTCTGGAGATTGTTTGTGGCAAGAAGAACAGCA 1594 | ||||| |||||||| ||||||||||||||||||||| |||||||||||||||| |||| Sbjct 1535 CCGATGTCTATAGCTTCGGAGTATTGATTCTGGAGATTATTTGTGGCAAGAAGAATAGCA 1594 Query 1595 GCTTCTATAAGATAGATGATTCTGGTGGCAATTTGGTGACACATGTTTGGCGGCTTTGGA 1654 |||||||| |||| ||||||||||| || ||||||||||||||||||||| ||||||||| Sbjct 1595 GCTTCTATCAGATGGATGATTCTGGGGGAAATTTGGTGACACATGTTTGGAGGCTTTGGA 1654 Query 1655 ACAATGACTCACCTTTAGATCTCATCGACCCTGCGATTGAGG-AAAGCTGCGATAATGAT 1713 ||||||| |||||||||||||||||||||||||||||| ||| |||||| |||||||||| Sbjct 1655 ACAATGATTCACCTTTAGATCTCATCGACCCTGCGATT-AGGGAAAGCTACGATAATGAT 1713 Query 1714 AAAGTCATAAGATGTATCCATATCGGACTTTTATGTGTTCAAGAAACTCCTG-TAGATCG 1772 ||||||| |||||||||||||||||| |||||||||||||||||||||| | | ||||| Sbjct 1714 GAAGTCATTAGATGTATCCATATCGGAATTTTATGTGTTCAAGAAACTCCCGCT-GATCG 1772 Query 1773 GCCAGAGATGTCTACAATATTTCAAATGCTTACTAATAGCTCCATTACTCTGCCTGTGCC 1832 || ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 1773 TCCGGAGATGTCTACAACCTTTCAAATGCTTACGAATAGCTCCATTACTCTGCCTGTGCC 1832 Query 1833 TCGACCACCTGGATTTTTCTTCAGGAACAGATCCAATTTAGACCCTTTAACTTATGGATC 1892 ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1833 TCGCCCACCTGGATTTTTCTTCAGGAACAGGCCCAATTTAGACCCTTTAACTTATGGATC 1892 Query 1893 CGAGCTGGGGCAATCGAGCAGCAAATCTATTCCTTATACTATAGATAGTGCGTCAATCAC 1952 ||||| |||||||| |||| || ||| |||||||| |||||||||||||||||||||| Sbjct 1893 CGAGCCAGGGCAATCCAGCAACATGTCTGTTCCTTATTCTATAGATAGTGCGTCAATCAC 1952 Query 1953 TAGAGTCACTCCTCGGT 1969 ||||||||||||||||| Sbjct 1953 TAGAGTCACTCCTCGGT 1969 Score = 604 bits (327), Expect = 6e-172 Identities = 628/768 (82%), Gaps = 41/768 (5%) Strand=Plus/Plus Query 1 ATGTGTCTGCAA-AATCTCTTGTCAATCCTCTGTTTTGTCCTC-GCCATTAGCTTCGGCT 58 |||| |||| || || || || ||||| ||||||||| || || || |||| ||||| | Sbjct 1 ATGTTTCTG-AACAAACTTTTTTCAATGCTCTGTTTTATCTTCATCC-TTAGTTTCGGTT 58 Query 59 ACGTGTCTGCACAAAAATGCGTG-GATTCAATGTTTTTCAGACCCAACGGTACTTATGAC 117 || |||||||||||||| | | || ||||||||||||||||| || |||||||||||| Sbjct 59 TTGTCTCTGCACAAAAATGTG-GAGAGTCAATGTTTTTCAGACCAAATGGTACTTATGAC 117 Query 118 ACAAACCGTCATCTCATTCTCTCAAAC-CTTGCTTCCAACGTGAGTTCTC--GA-GACGG 173 || ||||||| |||| ||||||| ||| || ||||||||||| ||||||| | || | Sbjct 118 ACTAACCGTCGTCTCGTTCTCTC-AACTCTAGCTTCCAACGTCAGTTCTCAAAACAACCG 176 Query 174 CTACTACAACGGT-TCTGTCGGTGAAGG-CCCTGATAGAATCTATGCGTTAGGTCTCTGT 231 || ||||||| || || ||||||||||| | || || |||||||| ||||| |||||| Sbjct 177 CTTCTACAAC-GTCTCAGTCGGTGAAGGAGCTTG-GAGGATCTATGCTTTAGGCCTCTGT 234 Query 232 ATCCCAGGGACTGATCCAAAGGTCTGTGATGATTGTATGCAAATCGCATCTACG--GGTA 289 |||||||||||||||||||||||||||| || ||||| ||| ||||||| | | ||| Sbjct 235 ATCCCAGGGACTGATCCAAAGGTCTGTGCCGACTGTATCCAACTCGCATC-A-GAAGGTT 292 Query 290 TATTACAAAACTGCCCGAACCAGACCGACTCATACGACTGGAGATCCCAGAAAACACTCT 349 ||||||||||||| ||||||||||||||||||| |||||||||| | | || || |||| Sbjct 293 TATTACAAAACTGTCCGAACCAGACCGACTCATTCGACTGGAGAGGCAACAAGACGCTCT 352 Query 350 GTTTCGTTCGTTACTCCAACAGCTCGTTTTTCAACAAAATGGATCTAGAGCCGACAATGG 409 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 353 GTTTCGTTCGTTACTCCAACAGCTCGTTTTTCAACAAGATGGATCTAGAGCCGACA--G- 409 Query 410 TTATAGGAGATCTAAATAGTGGACTA-TTCCAAGGGGACCTTGCAGCTTATA-CAAGAAC 467 | | | || | | | || | | | || ||||| || || | |||||| || |||| Sbjct 410 T-A-AC-AGTTTTCAGTACTAAAA-AGTTTCAAGGTAACTTTAAAACTTATAACA-GAAC 464 Query 468 ATGGGAGGAGTTCATGAACTCTATGATCACCAGAGTCGGTCGAA-CTCGTTACCTGGCCG 526 |||||| | | ||||||||| |||||||||| ||||||||| || ||| ||||| |||| Sbjct 465 ATGGGACGCGCTCATGAACTTTATGATCACCCGAGTCGGTC-AATCTCAATACCTTGCCG 523 Query 527 ATATATCCCCTCGGATAGGTTCTGCTCGTATATATGCGCTGATGCAATGTATTC-GAGGG 585 | ||||||||||| ||||||| || ||||||||| | |||||||| ||||||| | ||| Sbjct 524 AAATATCCCCTCGAATAGGTTTTGATCGTATATACACTCTGATGCAGTGTATTCCG-GGG 582 Query 586 ATATCCTCTATGGAATGTGAAACTTGTATT-CGAGATAA-TGTGCGTA-TGTACCAGAGT 642 ||||||||| || |||||||| |||||| | || ||| ||| |||| | |||||||| Sbjct 583 CTATCCTCTAACGACTGTGAAACCTGTATTAC-AG-TAAGTGTCCGTAAT-TACCAGAGA 639 Query 643 TGCTGCAATGGGTTCATAGGAGGAA-CTATTCGCAAGCCGGTCTGCTTTTTCAGGTGGGA 701 ||||||||||| ||| |||| ||| | |||||||||| |||||||||||| ||||||| Sbjct 640 TGCTGCAATGGCTTCGTAGGTGGAGTCG-TTCGCAAGCCTGTCTGCTTTTTCCGGTGGGA 698 Query 702 TGGTTCTGAATATCTTGGTGCCTTTGGTGACACGCCATCGCTACCTCC 749 ||||| |||||||||||||||||||||| |||||| ||| ||||||| Sbjct 699 TGGTTATGAATATCTTGGTGCCTTTGGTAACACGCAATCATTACCTCC 746 > Ahg489974 jgi|Araly1|489974|fgenesh2_kg.6__3108__AT4G11460.1 Length=2016 Score = 750 bits (406), Expect = 0.0 Identities = 715/860 (83%), Gaps = 38/860 (4%) Strand=Plus/Plus Query 1022 CAAACGAAACAGAAGTTGCGGTGAAGCGGCTATCGAGTAA-TTCAGGA-CAAGG-CACAC 1078 |||| | ||| |||||||| || ||| |||| || || || |||| || ||||| | || Sbjct 1082 CAAATGGAACTGAAGTTGCAGTTAAGAGGCTGTCAAG-AACTTCA-GATCAAGGTGA-AC 1138 Query 1079 AAGAGTTCAAGAACGAGGTTG-TAATTGTGGCTAAGCTTCAACATAAGAATCTTGTTAGG 1137 |||||||||||||||| || | | || || |||||||| | |||||| |||||| Sbjct 1139 TGGAGTTCAAGAACGAGG-TGCTTCTGGTAGCAAAGCTTCAGCCCCGGAATCTCGTTAGG 1197 Query 1138 CTTCTTGGGTTTTGCT-TAG-AAAGAGATGAACAGATACTTGTCTACGAGTTTGTTCCCA 1195 |||| | ||||||||| | | || |||| ||| ||||||| |||| ||||||||||||| Sbjct 1198 CTTC-TCGGTTTTGCTCT-GCAAGGAGAAGAAAAGATACTCGTCTTTGAGTTTGTTCCCA 1255 Query 1196 ACAAGAGCCTTAATTATTTCCTCTTTGGTAATAAACAAAAACACTTACTTGATCCAACCA 1255 |||||||||| ||||||||||||| |||| | || || | ||||| | Sbjct 1256 ACAAGAGCCTCGATTATTTCCTCTTCGGTAGT----------AC-TA----ACCCAACAA 1300 Query 1256 AGAAGAGTCAGCTAGATTGGAAAAGACGGTACAACATCATAGGAGGGATTACGCGAGGGC 1315 ||||| ||||||| || |||| |||| ||||||||||||| ||||||||||| |||||| Sbjct 1301 AGAAGGGTCAGCTGGACTGGACAAGATGGTACAACATCATCGGAGGGATTACACGAGGGA 1360 Query 1316 TTCTCTATCTTCATCAAGACTCGCGGCTAACCATCATACACCGTGACATCAAAGCAAGTA 1375 ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| Sbjct 1361 TTCTCTATCTTCATCAAGACTCGAGGCTCACCATCATACACCGTGACATCAAAGCGAGTA 1420 Query 1376 ACATTCTTTTAGATGCTGATATGAACCCTAAAATAGCGGATTTTGGAATGGCAAGGAATT 1435 |||||||||||||||| |||||||||| |||||||||||||| | |||||| ||||||| Sbjct 1421 ACATTCTTTTAGATGCCAATATGAACCCGAAAATAGCGGATTTCGAAATGGCTAGGAATT 1480 Query 1436 TTAGAG-TGGACCAAACTGAAGACAATACAAGAAGAGTTGTTGGAACTTTCGGTTACATG 1494 | |||| | | ||||||||||||| |||| |||||||||||||||| |||||||||||| Sbjct 1481 TCAGAGAT-CATCAAACTGAAGACAGTACAGGAAGAGTTGTTGGAACCTTCGGTTACATG 1539 Query 1495 CCTCCAGAGTATGTGACGCATGGCCAGTTCTCTACCAAATCTGATGTTTATAGCTTTGGA 1554 |||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||| ||| Sbjct 1540 CCTCCAGAATATGTGACGCATGGCCAATTCTCTACCAAATCCGATGTCTATAGCTTCGGA 1599 Query 1555 GTATTGATTCTGGAGATTGTTTGTGGCAAGAAGAACAGCAGCTTCTATAAGATAGATGAT 1614 ||||||||||||||||||||| |||||| |||||| |||||||||||| |||| |||| | Sbjct 1600 GTATTGATTCTGGAGATTGTTAGTGGCAGGAAGAATAGCAGCTTCTATCAGATGGATGGT 1659 Query 1615 TCTGGTGGCAATTTGGTGACACATGTTTGGCGGCTTTGGAACAATGACT-CA-CCTTTAG 1672 |||| | |||| ||||| ||| |||||||| | |||||||||| ||| | || || || | Sbjct 1660 TCTGTTTGCAACTTGGTCACATATGTTTGGAGACTTTGGAACACTGA-TACATCC-TTGG 1717 Query 1673 ATCTCATCGACCCTGCGATTGA-GGAAAGCTGCGATAATGATAAAGTCA-TAAGATGTAT 1730 | ||||| || || |||||| | |||||| | || || ||| |||||| | ||||| || Sbjct 1718 AGCTCATAGATCCGGCGATT-AGGGAAAGTTATGAGAAAGATGAAGTCACT-AGATGCAT 1775 Query 1731 CCATATCGGACTTTTATGTGTTCAAGAAACTCCTGTAGATCGGCCAGAGATGTCTACAAT 1790 |||||||||||||||||| |||||||||| ||||| | |||| |||| ||||||||| | Sbjct 1776 CCATATCGGACTTTTATGCGTTCAAGAAAATCCTGCAAATCGCCCAGCTATGTCTACAGT 1835 Query 1791 ATTTCAAATGCTTACTAATAGCTCCATTACTCTGCCTGTGCCTCGACCACCTGGATTTTT 1850 ||| || ||||| || ||||||||||||||||| ||| |||| ||||||||||||||| Sbjct 1836 ATTCCAGATGCTCACCAATAGCTCCATTACTCTAAATGTCCCTCAACCACCTGGATTTTT 1895 Query 1851 CTTCAGGAACAGATCC-AAT 1869 ||||||||||||| || ||| Sbjct 1896 CTTCAGGAACAGACCCGAAT 1915 > Ahg895324 jgi|Araly1|895324|Al_scaffold_0006_3320 Length=2007 Score = 736 bits (398), Expect = 0.0 Identities = 890/1120 (79%), Gaps = 64/1120 (6%) Strand=Plus/Plus Query 755 CTCCAGATGGGAAAACAATATCTACGGGAGCTATTGTTG-C-AGTTGT-TGTCTCCGTGG 811 |||||||||| ||||| || ||||| ||| ||| | || | | |||| | ||||||||| Sbjct 824 CTCCAGATGGCAAAACGATTTCTACAGGAATTATAG-TGTCTA-TTGTCT-TCTCCGTGG 880 Query 812 TTATATTTGTAGTGCTGCTCGCTTTAGTATTGGTCATACGGAAGAGAAGACAATCGTACA 871 | ||||| || | |||| | ||| ||| ||| | | ||||||||||||| | |||| Sbjct 881 TCATATTCGTGGCGCTGTTTGCTCTAGGGTTGATTTTTTTGAAGAGAAGACAAACATACA 940 Query 872 AAACACTAAAACCTAAAACTGATGATGACATGACAAGTCCACAGTCTCTGCAATTTGATT 931 || || |||| | | ||||| ||||||| || |||||||||||||||||||||||||||| Sbjct 941 AAGCATTAAAGCTTGAAACTAATGATGATATTACAAGTCCACAGTCTCTGCAATTTGATT 1000 Query 932 TTATGACCCTCGAAGCGGCAACTGATAAATTTTCGAGGAATAACAA-GCTAGGTAAAGGT 990 | | ||| | |||||||||||||||||||||||| |||| ||||| | | ||| ||||| Sbjct 1001 TCAAGACAATTGAAGCGGCAACTGATAAATTTTCGGGGAACAACAAAG-TCGGTCAAGGT 1059 Query 991 GGGTTTGGTGAAGTTTACAAGGGAATG-TTACCAAACGAAACAGAAGTTGCGGTGAAGCG 1049 || |||||||||||||||||||||| | ||| || | | ||| |||||||| |||||||| Sbjct 1060 GGATTTGGTGAAGTTTACAAGGGAA-GATTATCAGATGGAACTGAAGTTGCCGTGAAGCG 1118 Query 1050 GCTATCGAGTAATTCAGGACAAGGCACACAAGAGTTCAAGAACGAGGTTGTAATTGTGGC 1109 ||||| | ||||||||||||||| |||||||||| ||||| |||||||| ||||||| Sbjct 1119 ACTATCAAAAAATTCAGGACAAGGCTCACAAGAGTTTAAGAATGAGGTTGTTCTTGTGGC 1178 Query 1110 TAAGCTTCAACATAAGAA-TCTTGTTAGGCTTCTTGGGTTTTGCTTAGAAAGAGATGAAC 1168 ||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||| |||| Sbjct 1179 GAAGCTTCAACATA-GAAATCTTGTTAGGCTTCTTGGGTTTTGCTTGGAAGGAGAAGAAC 1237 Query 1169 AGATACTTGTCTACGAGTTTGTTCCCAACAAGAGCCTTAATTATTTCCTCTTTGGTAATA 1228 ||||||||||||| |||||||||||||||||||||||| ||||||||||||| | | Sbjct 1238 AGATACTTGTCTATGAGTTTGTTCCCAACAAGAGCCTTGATTATTTCCTCTTCG--ACCC 1295 Query 1229 AACAAAAACACTTACTTGATCCAACCAAGAAGAGTCAGCTAGATTGGAAAAGACGGTACA 1288 ||||||| | | | || | ||| | || | | | |||| ||||||||| Sbjct 1296 AACAAAA-CG-T--C--GA-C-AACTA-GAT---T--G---G---GGAA--GACGGTACA 1333 Query 1289 ACATCATAGGAGGGATTACGCGAGGGCTTCTCTATCTTCATCAAGACTCGCGGCTAACCA 1348 | ||||| ||||||||| | |||||| ||||||||||||||||||| || ||||| || | Sbjct 1334 ATATCATTGGAGGGATTGCTCGAGGGATTCTCTATCTTCATCAAGATTCACGGCTCACAA 1393 Query 1349 TCATACACCGTGA-CATCAAAGCAAGTAACATTCTTTTAGATGCTGATATGAACCCTAAA 1407 ||||||||||||| | ||||||| || ||||||||| |||||| |||||||||||| ||| Sbjct 1394 TCATACACCGTGATC-TCAAAGCGAGCAACATTCTTCTAGATGATGATATGAACCCGAAA 1452 Query 1408 ATAGCGGATTTTGGAATGGCAAGGAATTTTAG-AGTGGACCAAACT-GAAGACAATACAA 1465 |||||||||||||| |||||||||||||| | | |||| |||||| || | |||||| | Sbjct 1453 ATAGCGGATTTTGGCATGGCAAGGAATTTCGGGA-TGGAGCAAACTCGA-GCCAATACTA 1510 Query 1466 G-AAGAGTTGTTGGAACTTTCGGTTACATGCCTCCAGAGTATGTGACGCATGGCCAGTTC 1524 | || | | | |||||| |||||||||||| |||| |||||||||| ||| || || || Sbjct 1511 GCAAAA-TAGCTGGAACCTTCGGTTACATGGCTCCCGAGTATGTGATGCACGGTCAATTT 1569 Query 1525 TCTACCAAATCTGATGTTTATAGCTTTGGAGTATTGATTCTGGAGATTGTTTGTGGCAAG 1584 || | ||||||||| | |||||||| ||||| ||| |||| |||||| | |||| ||| Sbjct 1570 TCCATGAAATCTGATATCTATAGCTTCGGAGTGTTGGTTCTTGAGATTATAAGTGGTAAG 1629 Query 1585 AAGAACAGCAGCTTCTATAAGAT-AGATG-ATTCTGGTGGCAATTTGGTGACACATGTTT 1642 | ||| || ||||||||| | || ||||| || ||| ||||||||| || ||||||| || Sbjct 1630 ATGAATAGTAGCTTCTATCA-ATCAGATGGAT-CTGCTGGCAATTTAGTAACACATGCTT 1687 Query 1643 GGCGGCTTTGGA-ACAATGACTCACCTTTAGATCTCATCGACCCTG-CGATTGA-GGAAA 1699 || | || |||| | || | || |||||||| ||| | ||| | | | ||||| || || Sbjct 1688 GGAGACTATGGAGAAAAGGT-TCGCCTTTAGAACTCTTGGACTC-GACTATTGAAGGGAA 1745 Query 1700 GC-TGCGATAATGATAAAGTCATAAGATGTATCCATATCG-GACTTTTATGTGTTCAAGA 1757 | | | | ||| |||| | |||||| || ||||||| | ||||||||||| ||||| Sbjct 1746 TTAT-C-AGAGCGATGAAGTTACAAGATGCATTCATATCGCG-CTTTTATGTGTGCAAGA 1802 Query 1758 A-ACTCCTGTAGATCGGCCAGA-GATGTCTACAAT-ATTTCAAATGCTTACTAATAGCTC 1814 | ||||| | |||| ||| | |||||||||||| |||| | |||| |||| || | | Sbjct 1803 GGA-TCCTGAAAATCGTCCA-ATGATGTCTACAATTATTTTGA-TGCTCACTAGTAACAC 1859 Query 1815 CATTACTCTGCCTGTGCCTCGACCACCTGGATTTTTCTTC 1854 || ||| | | |||||||| |||||| ||||||||| Sbjct 1860 AATCACTTTACAAGTGCCTCGTGCACCTGCTTTTTTCTTC 1899 Score = 339 bits (183), Expect = 6e-92 Identities = 331/400 (83%), Gaps = 19/400 (5%) Strand=Plus/Plus Query 14 ATCTCTTGTCAATCCTCTG--TT-TTGTCCTCGCCATTAGCTTCGGCTACGTGTCTGCAC 70 ||||||||||||||||||| || || || | | | |||||||||||||||| ||||| | Sbjct 14 ATCTCTTGTCAATCCTCTGTTTTATTATCTTTGTCTTTAGCTTCGGCTACGTATCTGCTC 73 Query 71 AAAAATGCGTG-GAT--TCAATGTTTTTCAGACCCAACGGTACTTATGACACAAACCGTC 127 ||||||| | | ||| || ||||||||||||| ||||||||||||||||||||||||| Sbjct 74 AAAAATGTG-GAGATAGTC--TGTTTTTCAGACCAAACGGTACTTATGACACAAACCGTC 130 Query 128 ATCTCATTCTCTCAAAC-CTTGCTTCCAACGTGAGTTCTCGAGACGGCTACTACAACGGT 186 ||| ||||||| ||| ||||| |||||||| |||||||||||||||| || ||| || Sbjct 131 GTCTTGTTCTCTC-AACTCTTGCCTCCAACGTCAGTTCTCGAGACGGCTTCTTCAA-TGT 188 Query 187 -TCTGTCGGTGAAGGCCCTGATAGAATCTATGCGTTAGGTCTCTGTATCCCAGGGACTGA 245 || || ||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| Sbjct 189 CTCGGTTGGTGAAGGCTCTGAAAGAATCTATGCTTTAGGCCTCTGTATCCCAGGGACTGA 248 Query 246 TCCAAAGGTCTGTGATGATTGTATGCAAATCGCATCT-ACGGGTATATTACAA-AACTGC 303 ||||||||| ||| || ||||| ||| ||| ||| |||| | | ||| || || || Sbjct 249 TCCAAAGGTGTGTTCCGAGTGTATCCAACCCGCGTCTGACGGTT-TGTTA-AAGAATTGT 306 Query 304 CCGAACCAGACCGACTCATACGACTGGAGATCCCAGAAAACACTCTGTTTCGTTCGTTAC 363 ||||| ||||||||||||| ||||||||| || | || || |||||||| |||||||| Sbjct 307 CCGAATCAGACCGACTCATGGGACTGGAGAGCCAACAAGACGCTCTGTTTTGTTCGTTAT 366 Query 364 TCCAA-CAGCTCGTTTTTCAACAAAATGGATCTAGAGCCG 402 ||||| | | |||||||||||| | || |||||||||||| Sbjct 367 TCCAATCGG-TCGTTTTTCAACGAGATTGATCTAGAGCCG 405 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74085526525 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5