BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11485.1
Length=309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327291 jgi|Araly1|327291|fgenesh1_pm.C_scaffold_6002511 383 4e-106
> Ahg327291 jgi|Araly1|327291|fgenesh1_pm.C_scaffold_6002511
Length=309
Score = 383 bits (207), Expect = 4e-106
Identities = 278/312 (89%), Gaps = 6/312 (2%)
Strand=Plus/Plus
Query 1 ATGAAGAAAGCTAGTCAACTATCAACAACCATTCTAACTATCTTCATCGTCCTTGCAATA 60
||||||||| | ||||||||||| | ||||||||||||||||||| | ||||||| |||
Sbjct 1 ATGAAGAAACCCAGTCAACTATCGGCCACCATTCTAACTATCTTCACCATCCTTGCTATA 60
Query 61 GGGATGATGGTGAAAGGAACAGTGGGAAAACAACGTCTT-TGTATTAAAGTTCTAACAAA 119
||| |||||||| ||| |||| |||||||||||||| || ||| ||||||||||||||||
Sbjct 61 GGGGTGATGGTGGAAGAAACACTGGGAAAACAACGT-TTATGTCTTAAAGTTCTAACAAA 119
Query 120 TGCTTCACATGTATCTAAGGGTGCATCAACATGTGATTCGAAATTGTGTACCTCTTTATG 179
|||||||||||||||||||| | ||||||||||||| |||||||||||||| ||| ||||
Sbjct 120 TGCTTCACATGTATCTAAGGATACATCAACATGTGACTCGAAATTGTGTACTTCTCTATG 179
Query 180 TGAAAAGATATCTCCTCAAGGAGTTAGTTTTTGCAAGCCTATTGCAACTACAGGA-CAAT 238
|||||||| |||||| ||||| ||| ||||||||||||||||||||||||| ||| ||||
Sbjct 180 TGAAAAGAAATCTCCCCAAGGGGTTGGTTTTTGCAAGCCTATTGCAACTAC-GGAACAAT 238
Query 239 CCAAGAAAGGAAATCCAGTATGTAACTGCAGATATTGGTGTCGATCGGATGGAACCCCG- 297
|||| |||||||| || | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 239 CCAAAAAAGGAAAACCTGAATGTAACTGCAGATACTGGTGTCGATCGGATGGAACCCCGT 298
Query 298 CACACCACATAG 309
| ||||| ||||
Sbjct 299 C-CACCAAATAG 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10874342865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5