BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11490.1
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895327 jgi|Araly1|895327|Al_scaffold_0006_3323 1435 0.0
Ahg492543 jgi|Araly1|492543|fgenesh2_kg.7__1976__AT4G23220.1 418 8e-116
> Ahg895327 jgi|Araly1|895327|Al_scaffold_0006_3323
Length=1965
Score = 1435 bits (777), Expect = 0.0
Identities = 948/1031 (92%), Gaps = 9/1031 (1%)
Strand=Plus/Plus
Query 887 CTGATCCTCCAGA-GG-AAT-CACCTAAATATTCACTGCAGTATGATCTTAAGACAATTG 943
||||| ||||| | || | | || ||| |||||||||||| || ||||| |||||||||
Sbjct 938 CTGATTCTCCAAAGGGTATTCCAACTACATATTCACTGCAATACGATCTGAAGACAATTC 997
Query 944 AAGCTGCAACATGTACCTTTTCAAAGTGCAACATGCTTGGTCAAGGTGGATTTGGAGAAG 1003
| |||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 998 AGGCTGCAACATGTACATTTTCAAAGAGCAATATGCTCGGTCAAGGTGGATTTGGAGAAG 1057
Query 1004 TTTTCAAGGGTGTGCTTCAAGACGGATCAGAAATTGCAGTGAAGAGGCTGTCAAAAGAAT 1063
||||||||||| | ||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 1058 TTTTCAAGGGTTTACTTCAAGACGGGTCAGAAATTGCGGTGAAGAGGCTATCAAAAGAAT 1117
Query 1064 CAGCTCAAGGTGTACAAGAGTTCCAGAATGAGACTAGTCTCGTGGCAAAGCTTCAGCACA 1123
|||| ||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1118 CAGCACAAGGAGTACAAGAGTTCAAGAATGAGAGTAGTCTCGTGGCAAAGCTTCAGCACA 1177
Query 1124 GAAATTTGGTTGGAGTTCTCGGGTTTTGTATGGAAGGAGAAGAAAAGATACTCGTATACG 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1178 GAAATTTGGTTGGAGTTCTCGGGTTTTGTATGGAAGGAGAAGAAAAGATACTCGTTTACG 1237
Query 1184 AATTTGTTCCCAACAAAAGCCTCGACCAGTTCTTGTTTGAACCTACAAAGAAAGGCCAAC 1243
| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1238 AGTTTGTTCCTAACAAAAGCCTCGACCAGTTCTTGTTTGAACCTACAAAGCAAGGCCAAC 1297
Query 1244 TGGATTGGGCGAAACGGTACAAGATTATTGTTGGAACTGCTAGAGGAATTCTATATCTTC 1303
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1298 TGGATTGGGCGAAACGGTACAAGATTATTGGTGGGACTGCTAGAGGAATTCTATATCTTC 1357
Query 1304 ATCATGACTCACCCCTCAAAATCATACACCGTGACCTCAAAGCTAGTAACATCCTCTTAG 1363
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 ATCATGACTCACCTCTCAAAATCATACACCGTGACCTCAAAGCTAGTAACATCCTCTTAG 1417
Query 1364 ATGCTGAAATGGAACCCAAAGTCGCAGATTTTGGAATGGCAAGAATTTTTAGGGTGGATC 1423
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||
Sbjct 1418 ATGCTGAAATGGAACCCAAAGTTGCAGATTTTGGAATGGCAAGGATTTTGAGGGTAGATC 1477
Query 1424 AATCTCGAGCGGATACAA-GAAGGGTAGTTGGAACCCATGGCTACATATCTCCAGAGTAT 1482
|||| ||||| ||||||| || | |||||||||||| |||||||||| ||||||||||||
Sbjct 1478 AATCACGAGCTGATACAAAGA-GAGTAGTTGGAACCTATGGCTACATGTCTCCAGAGTAT 1536
Query 1483 TTGATGCATGGCCAGTTCTCGGTGAAATCTGATGTCTATAGTTTTGGAGTCTTGGTTCTT 1542
||||||||||| || |||||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct 1537 TTGATGCATGGGCAATTCTCGATGAAATCTGATGTTTATAGTTTTGGGGTCTTGGTTCTT 1596
Query 1543 GAGATTATAAGTGGAAAAAGAAACAGCAACTTCCATGAAACTGATGAATCCGGAAAGAAT 1602
||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1597 GAGATAATAAGCGGAAAAAGAAACAGCAACTTCCACGAAACTGATGATTCCGGCAAGAAC 1656
Query 1603 TTGGTCACATATGCTTGGAGGCATTGGAGAAACGGATCACCATTAGAGCTTGTGGATTCA 1662
||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 1657 TTGGTCACACATGCTTGGAAGCATTGGAGAAACGGATCACCATTAGAGCTCGTGGATTCG 1716
Query 1663 GAACTCGAAAAGAATTATCAGAGTAATGAAGTCTTCAGATGCATCCATATCGCGCTATTA 1722
||||| | |||||| ||||||||||| ||||| |||||||||| ||||| |||||||||
Sbjct 1717 GAACTTGGAAAGAACTATCAGAGTAACGAAGTAATCAGATGCATTCATATTGCGCTATTA 1776
Query 1723 TGTGTTCAAAATGATCCAGAACAACGTCCGAATTTATCT-ACTATCATCATGATGCTCAC 1781
||||||||||||||||||||||||||||| |||| || | | | ||||| ||||||||||
Sbjct 1777 TGTGTTCAAAATGATCCAGAACAACGTCCAAATTCAT-TGAATGTCATCTTGATGCTCAC 1835
Query 1782 AAGTAACTCCATCACTTTACCGGTGCCTCAGTCACCGGTATATGAGGGAATGGACATGTT 1841
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1836 AAGTAACTCCATCACTTTACCGGTGCCTCAGTCACCAATATATGAGGGAATGGAGATGTT 1895
Query 1842 TCTACCTTCT-ATCAAATCTCTTCCTGGTTCTGTCAACGATTCATTGATTGATGACTTAG 1900
||||||| || |||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 1896 TCTACCT-CTGATCAAATCGGTTCCTGGTTCTATCAACGATTCATTGATTGATGACATAG 1954
Query 1901 TTCCTCGCTGA 1911
|||||||||||
Sbjct 1955 TTCCTCGCTGA 1965
> Ahg492543 jgi|Araly1|492543|fgenesh2_kg.7__1976__AT4G23220.1
Length=2409
Score = 418 bits (226), Expect = 8e-116
Identities = 669/877 (76%), Gaps = 53/877 (6%)
Strand=Plus/Plus
Query 940 ATTGAAGCTGCAACATGTACCTT-TTCAAAGTGCAACATGCTTGGTCAAGGTGGATTTGG 998
||||||| ||||||| || || || || ||||||| |||||| |||||||||||
Sbjct 1048 ATTGAAGATGCAACAAATAAATTCTT-GGAGAGCAACATAATTGGTCGCGGTGGATTTGG 1106
Query 999 AGAAGTTTTCAAGGGTGTGCTTCAAGACGG-ATCAGAAATTGCAGTGAAGAGGCTGTCAA 1057
|||||||||||||||||||||| || ||| | ||||| ||||| | |||||||||||||
Sbjct 1107 AGAAGTTTTCAAGGGTGTGCTT-AA--CGGCA-CAGAAGTTGCAATTAAGAGGCTGTCAA 1162
Query 1058 AAGAATC-AGCTCAAGGTGTACAAGAGTTCCAGAATGAGACTAGTC-TCGTGGC-AAAGC 1114
||| ||| || ||||||| || ||||||| |||||||| | || | || || ||| |
Sbjct 1163 AAGCATCGAGA-CAAGGTGCACGAGAGTTCAAGAATGAGGTT-GTTGTTGTTGCTAAA-C 1219
Query 1115 TTCAGCACAGAAAT-TTGGTTGGAG-TTCTCGGGTTTTGTATGGAAGGAGAAGAAAAGAT 1172
| || || || ||| ||| || || |||||||||||||| | |||||||| || |||||
Sbjct 1220 TCCAACATAGGAATCTTG-TTA-AGCTTCTCGGGTTTTGTCTAGAAGGAGATGAGAAGAT 1277
Query 1173 ACTCGTATACGAATTTGTTCCCAACAAAAGCCTCGACCAGTTCTTGTTTGAACCTACAAA 1232
||| || ||||| ||||| |||||||| |||||||| ||| | ||||| ||||| ||
Sbjct 1278 ACTTGTTTACGAGTTTGTCCCCAACAAGAGCCTCGATTTCTTCCTCTTTGACCCTACCAA 1337
Query 1233 GAAAGGCCAACTGGATTGGGCGAAACGGTACAAGATTATT-GTTGGAA-CTGCTAGAGGA 1290
| |||| || | || ||| ||||| ||||| ||||| | |||| | || |||||
Sbjct 1338 GCAAGGACAGTTAGACTGGAAAAAACGTTACAACATTATCCGG-GGAATCA-CTCGAGGA 1395
Query 1291 ATTCTATATCTTCATCATGACTCACCCCTCAAAATCATACACCGTGACCTCAAAGCTAGT 1350
||||||||||| ||||| ||||||| || | ||||||||| |||||||||||||| ||
Sbjct 1396 ATTCTATATCTCCATCAAGACTCACGGCTTACAATCATACATCGTGACCTCAAAGCCAGC 1455
Query 1351 AACATCCTCTTAGATGCTGAAATGGAACCCAAAG-TCGCAGATTTTGGAATGGCAAGAAT 1409
|| || ||| |||||||||| ||| || ||||| | || |||||||||||||| |||||
Sbjct 1456 AATATTCTCCTAGATGCTGATATG-AATCCAAAAATTGCTGATTTTGGAATGGCTAGAAT 1514
Query 1410 TTTTAGGG-TGGATCAATCTCGAGCGGATACAAGAAGGGTAGTTGGAACCCATGGCTACA 1468
|||| ||| | |||||| | |||| |||||| || ||||||| || | || ||||
Sbjct 1515 TTTT-GGGATCGATCAAAGTGGAGCTAATACAAAAAAAATAGTTGGGACACGCGGTTACA 1573
Query 1469 TATCTCCAGAGTATTTGATGCATGGCC-AGTTCTCGGTGAAATCTGATGTCTATAGTTTT 1527
| ||||||| ||| |||||||||||| | ||||| |||||||||||||||||||||
Sbjct 1574 TGCCTCCAGAATATGTGATGCATGGCCTA-TTCTCAACAAAATCTGATGTCTATAGTTTT 1632
Query 1528 GGAGTCTTGGTTCTTGAGATTATAAGTGGAA-AAAGAAACAGCAA-CTTCCATGAAACTG 1585
|||||||| ||||||||||||||| |||| ||| || ||| | | |||| | | |
Sbjct 1633 GGAGTCTTAGTTCTTGAGATTATATGTGGTCGAAATAA-CAG-ATTCGTCCACCAGTCAG 1690
Query 1586 ATGAATC-CGGAA-AGAATTTGGTCACATATGCTTGGAGG-CATTGGAGAAACGGATCAC 1642
| | | | | |||||||||| ||||| ||||||||| | | |||||||||| ||||
Sbjct 1691 AC-AC-CACAGTTGAGAATTTGGTGACATACGCTTGGAGGTCGT-GGAGAAACGGCTCAC 1747
Query 1643 CATTAGAGCTTGTGGATTCAGAAC-TCGAAAAGAATTATCAGA--GTAATGAAGTCTTCA 1699
|||| || | |||||| || | | | | |||||| | | | | || ||||| ||
Sbjct 1748 CATTGGAAATGGTGGATCCA-ACCATTTCAGAGAATTGTGACACCG-AA-GAAGTGA-CA 1803
Query 1700 -GATGCATCCATATCGCGCTATTATGTGTTCAAAATGATCCAGAACA-A-CGTCCGAATT 1756
|||||||||| || || || ||||||||||| | |||| | || | ||||| | |
Sbjct 1804 AGATGCATCCACATTGCACTGCTATGTGTTCAACACAATCCC-A-CAGATCGTCCCAGCT 1861
Query 1757 TATCTACTATC-ATCATGATGCTCAC-AAGTAACTCC 1791
| || || ||| | |||||||||||| || ||| |||
Sbjct 1862 TGTCGACAATCTA-CATGATGCTCACTAA-TAATTCC 1896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71800111825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5