BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G11510.1

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489977 jgi|Araly1|489977|fgenesh2_kg.6__3111__AT4G11510.1         217    4e-56


> Ahg489977 jgi|Araly1|489977|fgenesh2_kg.6__3111__AT4G11510.1
Length=168

 Score =  217 bits (117),  Expect = 4e-56
 Identities = 152/169 (90%), Gaps = 2/169 (1%)
 Strand=Plus/Plus

Query  91   GCAAATGAGATTGGCTATCCAGGAATGGGACGCGGCGATCGCCAACCAGGATGTGATCAT  150
            ||||| || ||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct  1    GCAAAAGACATTGGCTATCCAGGAATAGGACGAGGCGATCGCCAACCAGGATGTGATCAT  60

Query  151  GGCAACTGTCCACCCGATCAACCGGCGAATCCGTACCATCGAGGATGTGAAAAATCAAAG  210
            ||||| ||||||||||| ||||||||||||||||||||||| || ||||||| | |||| 
Sbjct  61   GGCAATTGTCCACCCGACCAACCGGCGAATCCGTACCATCGGGGTTGTGAAATAGCAAAA  120

Query  211  AGATGTCGTGGTCCAGATCCACCAGCTC-TTCCTCGAAAGATGATATAA  258
            |||||||||||||||  |||||||| || ||| || |||||||||||||
Sbjct  121  AGATGTCGTGGTCCATCTCCACCAGTTCCTTC-TCAAAAGATGATATAA  168



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8974241335


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5