BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11521.1
Length=1151
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895332 jgi|Araly1|895332|Al_scaffold_0006_3328 955 0.0
Ahg914949 jgi|Araly1|914949|Al_scaffold_0001_5203 569 1e-161
> Ahg895332 jgi|Araly1|895332|Al_scaffold_0006_3328
Length=639
Score = 955 bits (517), Expect = 0.0
Identities = 599/639 (94%), Gaps = 4/639 (1%)
Strand=Plus/Plus
Query 217 GCTCACAACGGCTTCTACAGCTCCACCATCGGCCAAAATCCTA-ACCAAATGTTCATCAT 275
||| |||||||||||||||||||| |||||||||||||||| | ||||||||||||||||
Sbjct 1 GCTAACAACGGCTTCTACAGCTCCTCCATCGGCCAAAATCC-AGACCAAATGTTCATCAT 59
Query 276 TAGCATGTGCATCCCTGGAACTAAACCAGAGAGATGTTCAGATTGCATCAAAGGCTCAAC 335
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 60 TGGCATGTGTATCCCTGGAACTAAACCAGAGAGATGTTCAGATTGCATCAAAGGCTCATC 119
Query 336 AGACGGCTTGTTACGAAGCTGTCCTAACCAAACAGTTGGTTATGTATGGCCAGATTGTTG 395
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGACGGCTTGTTAAGAAGCTGTCCTAACCAAACAGTTGGTTATGTATGGCCAGATTGTTG 179
Query 396 TATGGTACGTTATTCCAACATTTCCTTCTCTGGATCACTCATTATGGAACCGTCTCAACC 455
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 180 TATGGTACGTTATTCCAACATTTCATTCTCTGGATCATTCATTATGGAACCGTCTCAACC 239
Query 456 -AGTGTCTGATCCCGCACCTATCGGTGTTGATTTGACATTGTTTGATAGAATATGGGACG 514
| |||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 240 TA-TGTCCGATCCCGCACCTATCGGTGTTGATTTGAAATTGTTTGATAGAATCTGGGACG 298
Query 515 AGTTAATGTCTCGTACGATAACTACAGCTTCGAGGACTCATGGATCATTATCATTTGGGC 574
| |||||||| ||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 299 ACTTAATGTCCCGTACGATAGCTGCAGCTTCGAGGACTCATGGATCATCATCATTTGGGC 358
Query 575 ATAAGTACTATGCAGCTGATGTTGCTTCATTGACAACTTTCCAAACTATATACACCATGG 634
|||| |||||| ||||||| ||||||||||||||| |||||||||||||||| | ||||
Sbjct 359 ATAAATACTATACAGCTGAGGTTGCTTCATTGACAGCTTTCCAAACTATATATGCAATGG 418
Query 635 TACAATGTACACCGGATGTTTCTTCAGGGGATTGTGAGTTTTGTTTGAAGAGAACTGTTC 694
| ||||||||||||||||||||||||||||| |||||||||||| |||| | |||||||
Sbjct 419 TGCAATGTACACCGGATGTTTCTTCAGGGGACTGTGAGTTTTGTCTGAACAAAACTGTTG 478
Query 695 TTGATTACAAGAAATGTTGTCGCGGTCACATTGGCGGTGCTTTTGTAAGACCATTTTGTT 754
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 TTGATTATAAGAAATGTTGTCGCGGTCACATTGGCGGTGCTTTTGTAAGACCATTTTGCT 538
Query 755 TTATCCGGTGGGATTTGTATCCTTTTGCTGGAGCTTTTGAAAATATTACGTTGCCATCGC 814
||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 539 TTATCCGGTGGGATTTGTATCCTTTTGCTGGAGCTTTTGAACATCGTACATTGCCATCGC 598
Query 815 CTCCACCACCGCTTTCTTTGACTCCTCCCGTAAGCAATT 853
|||||||||||||||||||||||||||| ||||||||||
Sbjct 599 CTCCACCACCGCTTTCTTTGACTCCTCCGGTAAGCAATT 637
> Ahg914949 jgi|Araly1|914949|Al_scaffold_0001_5203
Length=1899
Score = 569 bits (308), Expect = 1e-161
Identities = 640/794 (81%), Gaps = 47/794 (6%)
Strand=Plus/Plus
Query 58 ATGATGCTCAA-TACTTTATTTTTACCAATCTTCTTG-TTTTTCCTCATAACCTTTGATT 115
|||| |||||| | |||||||||| |||| ||||||| ||||| ||||||| ||| ||||
Sbjct 1 ATGAAGCTCAAGT-CTTTATTTTTTCCAACCTTCTTGATTTTT-CTCATAAGCTTAGATT 58
Query 116 ATGTTTCT--AC-ACAAACCTGCTTCAATGGATACTTTAAACCAAATGGTACTTACGACT 172
||||||| || | ||| |||||||||||||| ||||||||| ||| |||| ||||| |
Sbjct 59 CTGTTTCTGAACAAGAAATCTGCTTCAATGGATTCTTTAAACCCAATAGTACATACGATT 118
Query 173 TAAACCGTCGTCGGATCCTCTCTTCTCTTGCTTCCAAAGTCACAGCTCACAACGGCTTCT 232
|||||||||||| ||||||||| |||||||||| || |||||||||||||||||||| |
Sbjct 119 TAAACCGTCGTCAAATCCTCTCTACTCTTGCTTCTAATGTCACAGCTCACAACGGCTTTT 178
Query 233 ACAGCTCCACCATCGGC-CAAAATCCTAACCA-AATGTTCATCATTAGCATGTGCATCCC 290
|| ||||| || || ||| |||| || | | | || |||||| | |||||||||||
Sbjct 179 TCAACTCCAAGAT-TGCTCAAGATCCCAA-TAGAGTCTTTATCATTGGTATGTGCATCCC 236
Query 291 TGGAACTAAACCAGAGAGATGTTCAGATTGCATCAAAGGCT-CAACAGACGGCTTG-T-T 347
|| ||||||||||||| ||||||||||| |||||||| | || |||| | | | |
Sbjct 237 GGGGACTAAACCAGAGACTTGTTCAGATTGTATCAAAGG-TGCATCAGA--G-AAGATAT 292
Query 348 ACGA-AGCTGTCCTAACCAAACAGTTGGTTATGTATGGCCAGATTGTTGTATGGTACGTT 406
| | || | |||||||||||||| || |||| ||||||||||||||||||||||||||
Sbjct 293 CCAAGAGTTTTCCTAACCAAACAGATGCTTATACATGGCCAGATTGTTGTATGGTACGTT 352
Query 407 ATTCCAACATTTCCTTCTCTGGATCACTCATTATGGAACCGTCTCAACCAGT-GTCTGAT 465
||||||||||||| ||||||||||||||| |||||||||| ||| || | || || | ||
Sbjct 353 ATTCCAACATTTCATTCTCTGGATCACTCGTTATGGAACCATCTGAAAC-GTTGTATCAT 411
Query 466 CCCGCACCTATCG--G-T--GT----TGATTTGACATTGTTTGATAGAATATGGGACGAG 516
||| | ||||| | | | | |||| ||| ||||||||||||| |||||||||
Sbjct 412 ACCGGAGATATCGAAGATACGGGCACTAATTTAACAGTGTTTGATAGAATCTGGGACGAG 471
Query 517 TTAATGTCTC-GTACGATAACTACAGCTTC---GAG--G-ACTCATGGATCATTATCATT 569
|||||| ||| |||| |||||| ||||||| ||| | ||||||||||||| ||||
Sbjct 472 TTAATG-CTCCGTACAATAACTGCAGCTTCATTGAGTAGTACTCATGGATCAT---CATT 527
Query 570 TGGGCATAAGTACTATGCAGCTGATGTTGCTTCATTGACAACTTTCCAAACTATATACAC 629
||| || ||||||| || |||||| ||||||||||||||| ||||| ||||||| || |
Sbjct 528 TGGACAAAAGTACTTTGGAGCTGAGGTTGCTTCATTGACAGCTTTCGAAACTATGTATGC 587
Query 630 CATGGTACAATGTACACCGGATGTTTCTTCAGGGGATTGTGAGTTTTGTTTGAAGAGAAC 689
||| | |||||||| ||||||||||||||| ||||||||||||||| |||||| ||
Sbjct 588 GATGATGCAATGTACGCCGGATGTTTCTTCAAAAGATTGTGAGTTTTGTCTGAAGACAAG 647
Query 690 TGTTCTTGATTACAAGAAATGTTGTCGCGGTCA-CATTGGCGGTGCTTTTG-TAAGACC- 746
|||| |||||| || |||||||||||| | || || ||||| | | |||||||
Sbjct 648 TGTTGGTGATTATGAGTCTTGTTGTCGCGGTAAACAA-GGTGGTGCGGT-GATAAGACCG 705
Query 747 ATTTTGTTTTATCCGGTGGGATTTGTATCCTTTTGCTGGAGCTTTTGAAAATATTACGTT 806
| || | ||| ||||||||||||||||||||| ||||||||||||||| || ||| | ||
Sbjct 706 AGTT-GCTTTGTCCGGTGGGATTTGTATCCTTATGCTGGAGCTTTTGAGAACATTGCATT 764
Query 807 GCCATCGCCTCCAC 820
|||| |||||||||
Sbjct 765 GCCACCGCCTCCAC 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42926404542
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5