BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11530.1
Length=2010
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914949 jgi|Araly1|914949|Al_scaffold_0001_5203 1282 0.0
Ahg895324 jgi|Araly1|895324|Al_scaffold_0006_3320 761 0.0
Ahg895328 jgi|Araly1|895328|Al_scaffold_0006_3324 750 0.0
Ahg889847 jgi|Araly1|889847|Al_scaffold_0007_1833 676 0.0
Ahg492547 jgi|Araly1|492547|fgenesh2_kg.7__1980__AT4G23150.1 483 3e-135
Ahg492542 jgi|Araly1|492542|fgenesh2_kg.7__1975__AT4G23260.1 455 6e-127
Ahg889839 jgi|Araly1|889839|Al_scaffold_0007_1825 291 2e-77
Ahg895333 jgi|Araly1|895333|Al_scaffold_0006_3329 231 1e-59
> Ahg914949 jgi|Araly1|914949|Al_scaffold_0001_5203
Length=1899
Score = 1282 bits (694), Expect = 0.0
Identities = 883/972 (91%), Gaps = 21/972 (2%)
Strand=Plus/Plus
Query 1 ATGAAGCTAAAGAT-TTCGTTTTTACCAACCTTCTTGATTTTTCTCATAAGCTTAGATTC 59
|||||||| ||| | || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGCTCAAG-TCTTTATTTTTTCCAACCTTCTTGATTTTTCTCATAAGCTTAGATTC 59
Query 60 TGTTACTGCTCAAGAAATCTGTTTCAGTGGATTCTTTAAACCCAATAGTACATACGATTT 119
|||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 60 TGTTTCTGAACAAGAAATCTGCTTCAATGGATTCTTTAAACCCAATAGTACATACGATTT 119
Query 120 AAACCGTCGTCAAATCCTCTCTACTCTTTCTTCTAATGTCACAAG-TCACAACGGCTTTT 178
|||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||
Sbjct 120 AAACCGTCGTCAAATCCTCTCTACTCTTGCTTCTAATGTCACA-GCTCACAACGGCTTTT 178
Query 179 TCAACTCCAAGTTTGGTCAAGCTCCCAATAGAGTCTTCATCAATGGCATGTGCATCCCTG 238
||||||||||| ||| ||||| ||||||||||||||| |||| ||| ||||||||||| |
Sbjct 179 TCAACTCCAAGATTGCTCAAGATCCCAATAGAGTCTTTATCATTGGTATGTGCATCCCGG 238
Query 239 GGACTAAACCAGAGACTTGTTCAGATTGTATTAAAGGTGCATCAGACAAGATATC-AGAG 297
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||
Sbjct 239 GGACTAAACCAGAGACTTGTTCAGATTGTATCAAAGGTGCATCAGAGAAGATATCCA-AG 297
Query 298 AGTTGTCCTAACAAAACAGATGCTTATACATGGCCTGATTGTTGTATGGTACGTTATTCC 357
|||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 298 AGTTTTCCTAACCAAACAGATGCTTATACATGGCCAGATTGTTGTATGGTACGTTATTCC 357
Query 358 AACGTTTCTTTCTCTGGTTCACTCGTTATGGAACCTTCTGAAAC-TCTCTATCATACGGG 416
||| |||| |||||||| ||||||||||||||||| |||||||| | | |||||||| ||
Sbjct 358 AACATTTCATTCTCTGGATCACTCGTTATGGAACCATCTGAAACGT-TGTATCATACCGG 416
Query 417 AGATATCGAAGATACAGGCACTAATTTAACAGTGTTTGATAGAATTTGGGAAGAGTTAAT 476
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 417 AGATATCGAAGATACGGGCACTAATTTAACAGTGTTTGATAGAATCTGGGACGAGTTAAT 476
Query 477 GCTCCGTACAATAACTGCAGCTTCATTGAGTAGTAGTAATGGATCATCATTTGGACAAAA 536
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 477 GCTCCGTACAATAACTGCAGCTTCATTGAGTAGTACTCATGGATCATCATTTGGACAAAA 536
Query 537 GTACTTTGCAGCTGAGGTTGCTTCATTGACTA-CTTTCCAAACCATGTATGCGATGATGC 595
|||||||| ||||||||||||||||||||| | ||||| |||| ||||||||||||||||
Sbjct 537 GTACTTTGGAGCTGAGGTTGCTTCATTGAC-AGCTTTCGAAACTATGTATGCGATGATGC 595
Query 596 AATGTACGCCGGATGTTTCTTCGAAAGATTGTGAGTTTTGTTTGAAGACAAGTGTTGGTG 655
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 596 AATGTACGCCGGATGTTTCTTCAAAAGATTGTGAGTTTTGTCTGAAGACAAGTGTTGGTG 655
Query 656 ATTATGAGTCATGTTGCCGTGGTAAACAAGGTGGTGCGGTGATAAGACCAAGTTGCTTTG 715
|||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 656 ATTATGAGTCTTGTTGTCGCGGTAAACAAGGTGGTGCGGTGATAAGACCGAGTTGCTTTG 715
Query 716 TCCGGTGGGATTTGTATCCTTATGCTGGAGCTTTTGAAAATGTTACATTTCCACCGCCTC 775
||||||||||||||||||||||||||||||||||||| || || |||| ||||||||||
Sbjct 716 TCCGGTGGGATTTGTATCCTTATGCTGGAGCTTTTGAGAACATTGCATTGCCACCGCCTC 775
Query 776 CACCGCAGTCTTTACCTCAGCCACCGGTTTCTTTGATTCCTCCTCCAGTTAGCGATAGG- 834
||| |||||||||||||||||||||| |||||||| |||||||| ||||||||| ||
Sbjct 776 CAC-GCAGTCTTTACCTCAGCCACCGCTTTCTTTG---CCTCCTCCGGTTAGCGATCGGA 831
Query 835 -GCAAA-TACAACCATCAA-AGGGATTATTGTGGCTATTGTTGTTCCTATCATTGTTATC 891
| ||| | || | || ||||||||| ||||| |||||||| |||||| | ||||||
Sbjct 832 TGGAAAAT-CA-CTTTCGCCAGGGATTATGGTGGCAATTGTTGT-CCTATCGTCGTTATC 888
Query 892 TTGGTTTCACTTGTTGTACTACTCGTGGTTTGCAGAAGAAAGAAGTCATATAAAACAACT 951
||||||| ||||||||| |||||| |||||| || |||| ||| |||||||||||||||
Sbjct 889 TTGGTTTTTCTTGTTGTAGTACTCGCGGTTTGTAGGAGAAGGAAATCATATAAAACAACT 948
Query 952 GAGGTTCAAGCT 963
||||| ||||||
Sbjct 949 GAGGTCCAAGCT 960
Score = 1153 bits (624), Expect = 0.0
Identities = 715/759 (94%), Gaps = 6/759 (1%)
Strand=Plus/Plus
Query 1255 GAGTTTGTACCCAACAAAAGCCTTGACTATTTTC-TCTTTGACCCTGCAAAACAAGGTGA 1313
|||||||| |||||||||||||| ||||| |||| | |||||||||||||||||||||||
Sbjct 1144 GAGTTTGTCCCCAACAAAAGCCTCGACTA-TTTCTTGTTTGACCCTGCAAAACAAGGTGA 1202
Query 1314 ACTAGATTGGACAAGACGGTACAATATCATTGGGGGGATTGCTCGAGGAATTCTATATCT 1373
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 ACTAGACTGGACAAGACGGTACAATATCATTGGGGGGATTGCTCGAGGAATTCTATATCT 1262
Query 1374 TCATCAAGATTCACGGCTTACAATCATACACCGTGATCTCAAAGCGAGTAACATTCTCTT 1433
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1263 TCATCATGATTCACGGCTTACAATCATACATCGTGATCTCAAAGCGAGTAACATTCTCTT 1322
Query 1434 AGATGCTGATATGAACCCCAAAATTGCAGATTTTGGCATGGCGAGGATTTTTGGAGTTGA 1493
|||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1323 AGATGCCAATATGAACCCCAAAATTGCAGATTTTGGAATGGCAAGGATTTTTGGAGTTGA 1382
Query 1494 TCAAAGTCAAGCCAACACAAGAAGAATCGCCGGAACATTTGGTTATATGTCTCCAGAATA 1553
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1383 TCAAAGTCAAGCCAACACAAGAAGAATCGTCGGAACATTTGGTTATATGTCTCCAGAATA 1442
Query 1554 TGCAATGCGTGGCCATTTCTCCATGAAGTCTGATGTCTATAGCTTTGGAGTATTGGTACT 1613
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1443 TGCAATGCGTGGCCATTTCTCCATGAAGTCTGATGTCTATAGCTTTGGAATATTGGTTCT 1502
Query 1614 AGAGATTATAAGTGGCAAAAAGAA-TAGCAGTTTCTACAACATTGATGATTCTGGTAGCA 1672
||| |||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct 1503 GGAGGTTATAAGTGGCAAAAA-AACTAGCAGTTTCTACAACATTGATGATTCTGGTGGCA 1561
Query 1673 ATTTGGTAACACACGCTTGGAGACTTTGGAGAAATGGGTCACCGTTAGAACTGGTGGATC 1732
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 1562 ATTTGGTAACACACGCTTGGAGGCTTTGGAGAAACGGGTCACCGTTGGAACTGGTGGATC 1621
Query 1733 CAACCATAGGAGAAAGTTATCAGAGTAGCGAGGCTACTAGATGCATCCATATCGCACTAT 1792
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1622 CAATCATAGGAGAAAGTTATCAGAGTAATGAGGCTACTAGATGCATCCATATCGCACTAT 1681
Query 1793 TATGTGTTCAAGAAGATCCTGCAGATCGTCCATTGTTACCAGCGATCATCATGATGCTTA 1852
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1682 TATGTGTTCAAGAAGATCCTGCAGATCGTCCGTTGTTACCAGCGATCATCTTGATGCTTA 1741
Query 1853 CTAGTAGCACAACCACTTTACATGTGCCTCGAGCGCCCGGATTTTGCCTAAGCGGGCGTG 1912
|||||||||||||||| |||| |||||||||||||||||||||||||||| | || ||||
Sbjct 1742 CTAGTAGCACAACCACGTTACCTGTGCCTCGAGCGCCCGGATTTTGCCTAGGTGGACGTG 1801
Query 1913 ATCTGGAACAGGATGG-TGTAGAGTATACCGAATCCACAAGCAGGTCTATTCCTGGTTCT 1971
| ||||| | |||| | | ||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 1802 AACTGGACCTGGATAGCT-TAGAGTATACCCAATCCACAAGCTGGTCTATTCCTTGTTCT 1860
Query 1972 ATCAATGATGCATCGATTACAGAGTTCTATCCTCGTTGA 2010
|||||||||||||| |||||||||||| |||||||||||
Sbjct 1861 ATCAATGATGCATCAATTACAGAGTTCGATCCTCGTTGA 1899
Score = 261 bits (141), Expect = 1e-68
Identities = 174/190 (92%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 1016 AAGCTGCAACTGACAAGTTTTCGGACAGTAACATGATCGGGCGAGGTGGATTTGGTGAAG 1075
||||||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||||
Sbjct 956 AAGCTGCAACTGATAAGTTTTCAGACAATAACATGATAGGGCGAGGTGGATTTGGTGAAG 1015
Query 1076 TTTACAGGGGAA-AGCTTTCAAGTGGACCTGAAGTAGCAGTGAAGAGACTGTCGAAAACA 1134
||||||| |||| | |||||| |||| | |||||||| |||||||||||||||||||||
Sbjct 1016 TTTACAGAGGAACA-TTTTCAACTGGAACAGAAGTAGCGGTGAAGAGACTGTCGAAAACA 1074
Query 1135 TCAGGACAAGGCGCGGAAGAGTTCAAGAATGAGGCTGTTCTTGTGTCGAAGCTTCAACAT 1194
||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 1075 TCAGGACAAGGCGCGGAAGAGTTCAAGAATGAGGCTGTTCTTGTGACAAAGCTTCAGCAT 1134
Query 1195 AAGAATCTGG 1204
| ||||||||
Sbjct 1135 AGGAATCTGG 1144
> Ahg895324 jgi|Araly1|895324|Al_scaffold_0006_3320
Length=2007
Score = 761 bits (412), Expect = 0.0
Identities = 769/939 (82%), Gaps = 34/939 (4%)
Strand=Plus/Plus
Query 962 CTACTGATGAGATCACAACAACACACTCACTGCAGTTTAG-TTTTAAGACAATTGAAGCT 1020
||| |||||| || |||| |||| || ||||| ||| | ||| ||||||||||||||
Sbjct 959 CTAATGATGATATTACAAGTCCACAGTCTCTGCAATTT-GATTTCAAGACAATTGAAGCG 1017
Query 1021 GCAACTGACAAGTTTTCGGACAGTAAC-ATGATCGGGCGAGGTGGATTTGGTGAAGTTTA 1079
|||||||| || ||||||| | ||| | | |||| | |||||||||||||||||||||
Sbjct 1018 GCAACTGATAAATTTTCGGGGAACAACAAAG-TCGGTCAAGGTGGATTTGGTGAAGTTTA 1076
Query 1080 CAGGGGAAAGCTT-TCAAG-TGGACCTGAAGTAGCAGTGAAGAGACTGTCGAAAACA-TC 1136
|| ||| ||| || || || |||| ||||||| || |||||| |||| || |||| | ||
Sbjct 1077 CAAGGG-AAGATTATC-AGATGGAACTGAAGTTGCCGTGAAGCGACTATC-AAAAAATTC 1133
Query 1137 AGGACAAGGCGCGGAAGAGTTCAAGAATGAGGCTGTTCTTGTGTCGAAGCTTCAACATAA 1196
|||||||||| | ||||||| |||||||||| |||||||||| |||||||||||||| |
Sbjct 1134 AGGACAAGGCTCACAAGAGTTTAAGAATGAGGTTGTTCTTGTGGCGAAGCTTCAACAT-A 1192
Query 1197 G-AATCTGGTCAGGCTTCTTGGATTTTGTTTGGAAGGAGAAGAAAAGATACTCGTCTATG 1255
| ||||| || ||||||||||| ||||| ||||||||||||||| ||||||| |||||||
Sbjct 1193 GAAATCTTGTTAGGCTTCTTGGGTTTTGCTTGGAAGGAGAAGAACAGATACTTGTCTATG 1252
Query 1256 AGTTTGTACCCAACAAAAGCCTTGACTATTTTCTCTTTGACCCTGCAAAACAAGGTGAAC 1315
||||||| |||||||| |||||||| ||||| ||||| ||||| |||||| | |||
Sbjct 1253 AGTTTGTTCCCAACAAGAGCCTTGATTATTTCCTCTTCGACCCAACAAAACGTCGACAAC 1312
Query 1316 TAGATTGGACAAGACGGTACAATATCATTGGGGGGATTGCTCGAGGAATTCTATATCTTC 1375
|||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 1313 TAGATTGGGGAAGACGGTACAATATCATTGGAGGGATTGCTCGAGGGATTCTCTATCTTC 1372
Query 1376 ATCAAGATTCACGGCTTACAATCATACACCGTGATCTCAAAGCGAGTAACATTCT-CTTA 1434
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |
Sbjct 1373 ATCAAGATTCACGGCTCACAATCATACACCGTGATCTCAAAGCGAGCAACATTCTTCT-A 1431
Query 1435 GATGCTGATATGAACCCCAAAATTGCAGATTTTGGCATGGCGAGGATTTTTGGAGTTG-A 1493
|||| |||||||||||| ||||| || |||||||||||||| |||| ||| || | || |
Sbjct 1432 GATGATGATATGAACCCGAAAATAGCGGATTTTGGCATGGCAAGGAATTTCGG-GATGGA 1490
Query 1494 TCAAAGTCAAGCCAACACAAG-AAGAATCGCCGGAACATTTGGTTATATGTCTCCAGAAT 1552
|||| || |||||| || || || ||| || ||||| || ||||| ||| |||| || |
Sbjct 1491 GCAAACTCGAGCCAATACTAGCAA-AATAGCTGGAACCTTCGGTTACATGGCTCCCGAGT 1549
Query 1553 ATGCAATGCGTGGCCA-TTTCTCCATGAAGTCTGATGTCTATAGCTTTGGAGTATTGGTA 1611
||| |||| || || ||| |||||||| |||||| |||||||||| ||||| |||||
Sbjct 1550 ATGTGATGCACGGTCAATTT-TCCATGAAATCTGATATCTATAGCTTCGGAGTGTTGGTT 1608
Query 1612 CTAGAGATTATAAGTGGCAAAAAGAATAGCAGTTTCTA-CAA-CATTGATG-ATTCTGGT 1668
|| |||||||||||||| || | |||||| || ||||| ||| || |||| || ||| |
Sbjct 1609 CTTGAGATTATAAGTGGTAAGATGAATAGTAGCTTCTATCAATCA--GATGGAT-CTGCT 1665
Query 1669 AGCAATTTGGTAACACACGCTTGGAGACTTTGGAGAAATGGGTCACCGTTAGAACTGGTG 1728
||||||| |||||||| ||||||||||| |||||||| || || || |||||||| ||
Sbjct 1666 GGCAATTTAGTAACACATGCTTGGAGACTATGGAGAAAAGGTTCGCCTTTAGAACTCTTG 1725
Query 1729 GA-TCCAACCATAGGAGA-AAGTTATCAGAGT-AGCGAGGCTACTAGATGCATCCATATC 1785
|| || | | || | || || ||||||||| | || | ||| |||||||| ||||||
Sbjct 1726 GACTCGA-CTATTGAAGGGAA-TTATCAGAGCGAT-GAAGTTACAAGATGCATTCATATC 1782
Query 1786 GCACTATTATGTGTTCAAGAAGATCCTGCAGATCGTCCATTGTTACC-AGCGATCATCAT 1844
|| || |||||||| ||||| ||||||| | |||||||| || | | | | || || |
Sbjct 1783 GCGCTTTTATGTGTGCAAGAGGATCCTGAAAATCGTCCAATGATGTCTA-CAATTATTTT 1841
Query 1845 GATGCTTACTAGTAGCACAACCACTTTACATGTGCCTCG 1883
|||||| ||||||| ||||| ||||||||| ||||||||
Sbjct 1842 GATGCTCACTAGTAACACAATCACTTTACAAGTGCCTCG 1880
> Ahg895328 jgi|Araly1|895328|Al_scaffold_0006_3324
Length=819
Score = 750 bits (406), Expect = 0.0
Identities = 587/674 (87%), Gaps = 13/674 (2%)
Strand=Plus/Plus
Query 1236 AGAAAAGATACTCGTCTATGAGTTTGTACCCAACAAAAGCCTTGACTATTTTCTCTTTGA 1295
|||||| |||||||| || ||||||||||| |||||||||||||| ||||| || || ||
Sbjct 75 AGAAAAAATACTCGTTTACGAGTTTGTACCTAACAAAAGCCTTGATTATTTCCTGTTCGA 134
Query 1296 CCCTGCAAAACAAGGTGAACTAG-ATTGGACAAGACGGTACAATATCATTGGGGGGATTG 1354
||||||||| | ||| ||||| | | ||||||||||||||| | || |||| |||||||
Sbjct 135 CCCTGCAAAGCGAGGCGAACT-GAACTGGACAAGACGGTACCACATTATTGCAGGGATTG 193
Query 1355 CTCGAGGAATTCTATATCTTCATCAAGATTCACGGCTTACAATCATACACCGTGATCTCA 1414
||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 194 CTCGAGGAATTATGTATCTTCATCATGATTCACGTCTTACAATCATACACCGTGATCTGA 253
Query 1415 AAGCGAGTAACATTCTCTTAGATGCTGATATGAACCCCAAAATTGCAGATTTTGGCATGG 1474
|||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 254 AAGCAAGTAACATTCTCTTAGATGCCGACATGAACCCCAAAATCGCAGATTTTGGCATGG 313
Query 1475 CGAGGATTTTTGGAGTTGATCAAAGTCAAGCCAACACAAGA-AGAATCGCCGGAACATTT 1533
||||||||| || ||||||||| ||| |||||||||| | ||||||| ||||||| |
Sbjct 314 CGAGGATTTACAGAATTGATCAAACTCATGCCAACACAA-ATAGAATCGTTGGAACATAT 372
Query 1534 GGTTATATGTCTCCAGAATATGCAATGCGTGGCCATTTCTCCATGAAGTCTGATGTCTAT 1593
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 373 GGTTATATGTCTCCAGAATATGCAATGCGTGGCCATTTCTCCATGAAATCTGATGTCTAT 432
Query 1594 AGCTTTGGAGTATTGGTACTAGAGATTATAAGTGGCAAAAAGAATAGCAGTTTCTACAAC 1653
|||||||| ||| || | |||||||| ||||||||||||| ||||||||| |||||| ||
Sbjct 433 AGCTTTGGTGTAATGATTCTAGAGATCATAAGTGGCAAAATGAATAGCAGCTTCTACGAC 492
Query 1654 ATTGATGATTCTGGTAGCAATTTGGTAACACACGCTTGGA-GACTTTGGAGAA-ATGGGT 1711
|||||||||||| |||||||||||| ||||| ||||||| | |||||||||| | ||||
Sbjct 493 ATTGATGATTCTCCTAGCAATTTGGTCACACATGCTTGGAAG-CTTTGGAGAACA-GGGT 550
Query 1712 CACCGTTAGAACTGGTGGATCCAACCATAGGAGAAAGTTATCAGAGTAGCGAGGCTACTA 1771
||| |||||||| |||||||| || ||||| || |||| | ||||| |||||||| ||
Sbjct 551 CACAATTAGAACTCGTGGATCCGACAATAGGTGAGAGTTCCCCGAGTAACGAGGCTATTA 610
Query 1772 ---GATGCATCCATATCGCACTATTATGTGTTCAAGAAGATCCTGCAGATCGTCCATTGT 1828
||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct 611 TTAGATTCATCCATATCGCACTTTTATGTGTTCAAGAAGATCCTGCAGATCGACCAATGT 670
Query 1829 TACCAGCGATCATCATGATGCTTACTAGTAGCACA-ACCACTTTACATGTGCCTCGAGCG 1887
| ||||| ||| || ||||||| ||||||| ||| || ||||||| ||||||||||||
Sbjct 671 TGCCAGCAATCGTCGTGATGCTCACTAGTAATACAGAC-ACTTTACCTGTGCCTCGAGCA 729
Query 1888 CCCGGATTTTGCCT 1901
||||| ||||||||
Sbjct 730 CCCGGCTTTTGCCT 743
Score = 93.5 bits (50), Expect = 6e-18
Identities = 60/65 (92%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 221 ATGGCATGTGCATCCCTGGGACTAAACCAGAGACTTGTTCAGATTGTATTAAAGGTGCAT 280
|||| |||||||||||||||||||||||||||||||| |||||||| || ||||| ||||
Sbjct 1 ATGGTATGTGCATCCCTGGGACTAAACCAGAGACTTGCTCAGATTGCATCAAAGGCGCAT 60
Query 281 CAGAC 285
|||||
Sbjct 61 CAGAC 65
> Ahg889847 jgi|Araly1|889847|Al_scaffold_0007_1833
Length=2025
Score = 676 bits (366), Expect = 0.0
Identities = 732/905 (81%), Gaps = 40/905 (4%)
Strand=Plus/Plus
Query 1002 TTTTAAGACAATTGAAGCTGCAACTGACAAGTTTTCGGAC-AGTAACATGATCGGGCG-A 1059
||||||||||||||||||||||||| |||||||||| || ||||| | | | || | |
Sbjct 1029 TTTTAAGACAATTGAAGCTGCAACTAACAAGTTTTC-AACAAGTAATAAGCT-TGGTGAA 1086
Query 1060 GGTGGATTTGGTGAAGTTTACAGGGGAAAGCTTTC-AAGTGGACCTGAAGTAGCAGTGAA 1118
|||||||| |||| ||||||| ||| |||||||| || |||| |||||||||| || ||
Sbjct 1087 GGTGGATTCGGTGCGGTTTACATGGGTAAGCTTTCTAA-TGGAACTGAAGTAGCTGTAAA 1145
Query 1119 GAGACTGTCGAAAACA-TCAGGACAAGGCGCGGA-AGAGTTCAAGAATGAGGCTGTTCTT 1176
| |||||||||||| | |||||||||||| | | |||||||| ||||||||||||||||
Sbjct 1146 GCGACTGTCGAAAA-AGTCAGGACAAGGCAC-AAGAGAGTTCAGGAATGAGGCTGTTCTT 1203
Query 1177 GTGTCGAAGCTTCAACATAAGAATCTGGTCAGGCTTCTTGGATTTTGTTTGGAAGGAGAA 1236
||||| || |||||||||| ||| |||||||||||||||||||| ||||||||| ||||
Sbjct 1204 GTGTCAAAACTTCAACATAGGAACCTGGTCAGGCTTCTTGGATTCTGTTTGGAAAGAGAG 1263
Query 1237 GAAAAGATACTCG-TCTATGAGTTTGTACC-CAACAAAAGCCTTGACTATTTTCTCTTTG 1294
||| |||| || | | ||||||||||| || |||||||||||||||||| ||||| || |
Sbjct 1264 GAACAGATTCT-GATTTATGAGTTTGT-CCACAACAAAAGCCTTGACTACTTTCTATTCG 1321
Query 1295 ACCCTGCA-AAACAAGGTGAACTAGATTGGA-CAAGACGGTACAATATCATTGGGGGGAT 1352
|||| | | || ||| || | ||||| |||| | || | |||| |||||||| |||||
Sbjct 1322 ACCC-GGAGAAGCAAAGTCAGCTAGACTGGACCCGGA-GATACAGGATCATTGGAGGGAT 1379
Query 1353 TGCTCGAGGAATTCTATATCTTCATCAAGATTCACGGCTTACAATCATACACCGTGATCT 1412
|||| |||| ||||||||||||||||||||||||||||| | ||||||||| ||||| ||
Sbjct 1380 TGCTAGAGGGATTCTATATCTTCATCAAGATTCACGGCTCAAAATCATACATCGTGACCT 1439
Query 1413 CAAAGCGAGTAACATTCTCTTAGATGCTGATATGAACCCCAAAATTGCAGATTTTGGCAT 1472
||||||||| ||||||||||||||||| |||||||| || |||||||| |||||||| ||
Sbjct 1440 CAAAGCGAGCAACATTCTCTTAGATGCGGATATGAATCCGAAAATTGCTGATTTTGG-AT 1498
Query 1473 -GGCGAGGATTTTTGGAGTTGATCAAAGTCAAGCCAACAC-AAGAAGAATCGCCGGAACA 1530
||| | ||||||||| | || |||| ||||| ||||| || | |||| || |||||
Sbjct 1499 TGGCAACTATTTTTGGAATGGAGCAAACTCAAGGAAACACGAACA-GAATTGCTGGAACC 1557
Query 1531 TTTGGTTATATGTCTCCAGAATATGCAATGCGTGGCCATTTCTCCATGAAGTCTGATGTC 1590
| | ||| |||||||| || ||||| |||| ||| || | ||||||||| ||||| |
Sbjct 1558 TACGCTTACATGTCTCCCGAGTATGCGATGCATGGTCAATACTCCATGAAATCTGACATT 1617
Query 1591 TATAGCTTTGGAGTATTGGTACTAGAGATTATAAGTGGCAA-AAAGAATAGCAGTTTCTA 1649
|||||||||||||| || || || ||||||||||| ||||| ||| || ||| | ||||
Sbjct 1618 TATAGCTTTGGAGTCTTAGTTCTTGAGATTATAAGCGGCAAGAAA-AACAGCGGCGTCTA 1676
Query 1650 CAACATTGATGATTCTGGTA--GCA--AT--TTGGTAACACACGCTTGGAGACTTTGGA- 1702
| | || ||||| || ||| ||| | || || || | |||| || |||||||
Sbjct 1677 CCAGATGGATGAAACTAGTACTGCAGGAAACTTAGTCACTTATGCTTCAAGGCTTTGGAT 1736
Query 1703 GAA-ATGGGTCACCGTTAGAACTGGTGGATCCAACCATAGGA-GAAAGTTATCAGAGTAG 1760
||| | | ||||| ||||| ||||||||||||||| | ||| | || |||||||||||
Sbjct 1737 GAACAAG--TCACCATTAGAGCTGGTGGATCCAACCTTTGGAAGGAA-TTATCAGAGTAA 1793
Query 1761 CGAGG-CTACTAGATGCATCCATATCGCACTATTATGTGTTCAAGAAGATCCTGCAGATC 1819
|| | | |||||||||||||||||||| || ||||||||||||||| |||| | ||| |
Sbjct 1794 TGAAGTC-ACTAGATGCATCCATATCGCGCTCTTATGTGTTCAAGAAAATCCAGAAGACC 1852
Query 1820 GTCCATTGTTACCAGCGATCATCATGATGCTTACTAGTAGCACAACCACTTTAC-ATGTG 1878
||||| ||||| || | |||||| | ||||| ||||| | ||||| |||| ||| | |||
Sbjct 1853 GTCCAATGTTATCAACAATCATCTTAATGCTCACTAGCAACACAATCACTCTACCA-GTG 1911
Query 1879 CCTCG 1883
|||||
Sbjct 1912 CCTCG 1916
> Ahg492547 jgi|Araly1|492547|fgenesh2_kg.7__1980__AT4G23150.1
Length=1656
Score = 483 bits (261), Expect = 3e-135
Identities = 527/655 (80%), Gaps = 20/655 (3%)
Strand=Plus/Plus
Query 1004 TTA-AGA-CAATTGAAGCTGCAACTGACAAGTTTTCGGACAGTAACATGATCGGGCGAGG 1061
||| ||| ||||| ||||| |||| | | ||||| || | ||| | || || |||||
Sbjct 975 TTATAGAGCAATTCAAGCTACAACAAATGATTTTTCAGAGAATAATAAAATTGGTCGAGG 1034
Query 1062 TGGATTTGGTGAAGTTTAC-AGGGGAAAGCTTTCAAGTGG-ACCTGAAGTAGCAGTGAAG 1119
|||||||||||| |||||| |||| | | |||||| ||| ||| ||||| |||||||||
Sbjct 1035 TGGATTTGGTGACGTTTACAAGGGTACA-TTTTCAAATGGAACC-GAAGTTGCAGTGAAG 1092
Query 1120 AGACTGTCGAAAACATCAGGACAAGGCG-CGGAAGAGTTCAAGAATGAGGCTGTTCTTGT 1178
||||||||||||||||||| |||||| | | | || |||||||| |||| |||| ||||
Sbjct 1093 AGACTGTCGAAAACATCAGAACAAGGTGACACA-GAATTCAAGAACGAGGTTGTTGTTGT 1151
Query 1179 -GTCGAAGCTTCAACATAAGAATCTGGTCAGGCTTCTTGGATTTTGTTTGGAAGGAGAAG 1237
| | || |||| || || |||||||| ||| |||| ||||||| | | ||||||||||
Sbjct 1152 TG-CAAATCTTCGGCACAAAAATCTGGTTAGGATTCTCGGATTTTCTATAGAAGGAGAAG 1210
Query 1238 AAAAGATACTCGTCTATGAGTTTGTACCCAACAAAAGCCTTGACTATTTTC-TCTTTGAC 1296
||| |||| | |||||||||| ||| || ||||||||||| || ||| | |||||
Sbjct 1211 AAAGGATATTGGTCTATGAGTATGTGGAAAATAAAAGCCTTGA-TAACTTCCTATTTGAT 1269
Query 1297 CCTGCAAA-ACAAGGTGAACTAG-ATTGGACA-AGACGGTACAATATCATTGGGGGGATT 1353
|||||||| | ||||| | || | | |||||| || || ||| |||||||| | ||||||
Sbjct 1270 CCTGCAAAGA-AAGGTCAGCT-GTACTGGACACAG-CGATACTATATCATTAGTGGGATT 1326
Query 1354 GCTCGAGGAATTCTATATCTTCATCAAGATTCACGGCTTACAATCATACACCGTGATCTC 1413
||| |||| || ||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 1327 GCTAGAGGGATCCTATATCTTCATCAAGATTCACGACTCACAATCATACACCGTGACCTC 1386
Query 1414 AAAGCGAGTAACATTCTCTTAGATGCTGATATGAACCCCAAAATTGCAGATTTTGGCATG 1473
|||||||||||||||||| | ||||| |||||||| || |||||||| |||||||| |||
Sbjct 1387 AAAGCGAGTAACATTCTCCTGGATGCAGATATGAATCCTAAAATTGCTGATTTTGGAATG 1446
Query 1474 GCGAGGATTTTTGGAGTTGATCAAAGTCAAGCC-AACACAAGAAGAATCGCCGGAACATT 1532
|| ||||| || ||| | || |||| || || |||||||| ||||| | || || |
Sbjct 1447 GCAAGGATCTTCGGAATGGACCAAACCCA-GCAGAACACAAGCAGAATAGTTGGTACCTA 1505
Query 1533 TGGTTATATGTCTCCAGAATATGCAATGCGTGGCCATTTCTCCATGAAGTCTGATGTCTA 1592
||||| |||||||| |||||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 1506 CGGTTACATGTCTCCTGAATATGCGATGCGTGGCCAATTCTCAATGAAATCTGATGTCTA 1565
Query 1593 TAGCTTTGGAGTATTGGTACTAGAGATTATAAGTGGCAAAAAGAATAGCAGTTTC 1647
|| ||||||||||| || || ||||||||||| || | ||||||| ||| |||
Sbjct 1566 CAGTTTTGGAGTATTAGTTCTTGAGATTATAAGCGGTAGGAAGAATAACAGCTTC 1620
> Ahg492542 jgi|Araly1|492542|fgenesh2_kg.7__1975__AT4G23260.1
Length=1990
Score = 455 bits (246), Expect = 6e-127
Identities = 494/613 (81%), Gaps = 19/613 (3%)
Strand=Plus/Plus
Query 1103 CTGAAGTAGCAGTGAAGAGACTGTCGAAAACATCAGGACAAGGCGCGGAAGAGTTCAAGA 1162
||||| | || || |||||| |||||||||||||||||||||| | | |||||||||||
Sbjct 1074 CTGAAATTGCGGTAAAGAGATTGTCGAAAACATCAGGACAAGGTGAAGTAGAGTTCAAGA 1133
Query 1163 ATGAGGCTGTTCTTG-TGTCGAAGCTTCAACATA-AGAATCTGGTCAGGCTTCTTGGATT 1220
| |||| |||| ||| || | ||||||||||| | | ||||| || || ||||| || ||
Sbjct 1134 ACGAGGTTGTTGTTGTTG-CAAAGCTTCAACACATA-AATCTCGTTAGACTTCTCGGTTT 1191
Query 1221 TT-GTTTGGAAGGAGAAGAAAAGATACTCGTCTATGAGTTTGTACCCAACAAAAGCCTTG 1279
|| | | |||||||||| ||| ||||||| ||||||||||| | ||||||||||| |
Sbjct 1192 TTCG-CTACAAGGAGAAGAGAAGTTACTCGTATATGAGTTTGTTTCAAACAAAAGCCTCG 1250
Query 1280 ACTATTTTCTCTTTGACCCTGC-AAAACAAGGTGAACTAGATTGGACAA-GACGGTACAA 1337
| ||||| |||||||| ||| | || | || | | | || ||||||| | || |||
Sbjct 1251 ATTATTTCCTCTTTGATCCTACGAAGAGAA-ATCAGTTGGACTGGACAATG-CGACGCAA 1308
Query 1338 TATCATTGGGGGGATTGCTCGAGGAATTCTATATCTTCATCAAGATTCACGGCTTACA-A 1396
|||||| || |||||| ||||||| ||| ||||||||||||||||||||||||| | | |
Sbjct 1309 TATCATCGGTGGGATTACTCGAGGGATTTTATATCTTCATCAAGATTCACGGCTGA-AGA 1367
Query 1397 TCATACACCGTGATCTCAAAGCGAGTAACATTCTCTTAGATGCTGATATGAACCCCAAAA 1456
||||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1368 TCATACATCGTGACCTCAAAGCGAGTAACATTCTCTTAGATGCTGATATGAATCCGAAAA 1427
Query 1457 TTGCAGATTTTGGCATGGCGAGGATTTTTGGAGTTGATCAAAGTCAAGCCAACACAAG-A 1515
|||| |||||||| ||||| ||||| |||||||| || |||| | |||||| ||| | |
Sbjct 1428 TTGCTGATTTTGGAATGGCAAGGATCTTTGGAGTGGACCAAACTGTAGCCAATACA-GCA 1486
Query 1516 AGAATCGCCGGAACATTTGGTTATATGTCTCCAGAATATGCAATGCGTGGCCATTTCTCC 1575
||| | | ||||| || ||||| |||||||| || |||| | | |||||| |||||
Sbjct 1487 AGAGTAGTTGGAACCTTCGGTTACATGTCTCCCGAGTATGTGACACATGGCCAATTCTCG 1546
Query 1576 ATGAAGTCTGATGTCTATAGCTTTGGAGTATTGGTACTAGAGATTATAAGTGGCAAAAAG 1635
||||| || ||||| |||||||||||||||||| | || ||||| || ||||||||||||
Sbjct 1547 ATGAAATCAGATGTGTATAGCTTTGGAGTATTGATTCTTGAGATCATTAGTGGCAAAAAG 1606
Query 1636 AATAGCAGTTTCTACAACATTGATGATTCTGGT-AGCAATTTGGTAACACACG-CTTGGA 1693
|||||||| |||||| | || |||| || | || | |||||| || ||| | | || |||
Sbjct 1607 AATAGCAGCTTCTACCAGATGGATGGTT-TAGTTAACAATTTAGTCACATATGTCT-GGA 1664
Query 1694 GACTTTGG-AGAA 1705
||||||| ||||
Sbjct 1665 AACTTTGGGAGAA 1677
> Ahg889839 jgi|Araly1|889839|Al_scaffold_0007_1825
Length=1506
Score = 291 bits (157), Expect = 2e-77
Identities = 280/339 (83%), Gaps = 10/339 (3%)
Strand=Plus/Plus
Query 1197 GAATCTGGTCAGGCTTCTTGGATTTTGTTTGGAAGGAGAAGAAAAGATACTCGTCTATGA 1256
|||||| || |||||||| || ||||||||||||||||||||||||||||| || || ||
Sbjct 627 GAATCTTGTTAGGCTTCTCGGTTTTTGTTTGGAAGGAGAAGAAAAGATACTTGTTTACGA 686
Query 1257 GTTTGTACCCAACAAAAGCCTTGACTATTTTCTCTTTGACCC--TGCAAAACAAGGTGAA 1314
|||||| |||||||| ||||| | || || ||||||||||| || || ||||| ||
Sbjct 687 GTTTGTGCCCAACAAGAGCCTCAATTACTTCCTCTTTGACCCAATG-AAG-CAAGGAGAG 744
Query 1315 CTAGATTGGACAAGACGGTACAATATCATTGGGGGGATTGCTCGAGGAATTCTATATCTT 1374
|||| ||||||| ||||||||| || || || || ||||||||||| ||||||||
Sbjct 745 TTAGACTGGACAAAACGGTACAACATTATCCTAGGAATCACTCGAGGAATTTTATATCTT 804
Query 1375 CATCAAGATTCACGGCTTACAATCATACACCGTGATCTCAAAGCGAGTAACATTCT-CTT 1433
|||||||||||| |||| |||||||||||||||||||||||||| || |||||||| ||
Sbjct 805 CATCAAGATTCAAGGCTCACAATCATACACCGTGATCTCAAAGCCAGCAACATTCTTCT- 863
Query 1434 AGATGCTGATATGAACCCCAAAATTGCAGATTTTGGCATGGCGAGGATTTTTGGAGTT-G 1492
|||||| |||||||||| |||||||| |||||||| |||||||| || ||||| | | |
Sbjct 864 AGATGCCAATATGAACCCAAAAATTGCTGATTTTGGAATGGCGAGAATATTTGG-GATCG 922
Query 1493 ATCAAAGTCAAGCCAACACAAGA-AGAATCGCCGGAACA 1530
| |||||| ||| || |||| | ||||| || ||||||
Sbjct 923 ACCAAAGTGGAGCTAATACAA-ACAGAATAGCTGGAACA 960
> Ahg895333 jgi|Araly1|895333|Al_scaffold_0006_3329
Length=180
Score = 231 bits (125), Expect = 1e-59
Identities = 162/180 (90%), Gaps = 1/180 (1%)
Strand=Plus/Plus
Query 643 ACAAGTGTTGGTGATTATGAGTCATGTTGCCGTGGTAAACAAGGTGGTGCGGTGATAAGA 702
|||||||||| |||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct 1 ACAAGTGTTGTTGATTATGAGTCGTGTTGTCGCGGTAAACAAGGTGGTGCGGTGATAAGA 60
Query 703 CCAAGTTGCTTTGTCCGGTGGGATTTGTATCCTTATGCTGGAGCTTTTGAAAATGTTACA 762
|||||||||||| |||||||||| |||||| ||||||||||||||||||| ||| |||||
Sbjct 61 CCAAGTTGCTTTTTCCGGTGGGAATTGTATACTTATGCTGGAGCTTTTGAGAATATTACA 120
Query 763 TTTCCACCGCCTCCACCGCAGTCTTT-ACCTCAGCCACCGGTTTCTTTGATTCCTCCTCC 821
|| | |||| ||||||| |||||||| ||||||||||||| ||||||| |||||||||
Sbjct 121 TTGCTACCGTCTCCACCACAGTCTTTCACCTCAGCCACCGCAATCTTTGACTCCTCCTCC 180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75571046080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5