BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11550.1
Length=2007
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942994 jgi|Araly1|942994|scaffold_603538.1 220 2e-56
Ahg942712 jgi|Araly1|942712|scaffold_603256.1 187 2e-46
> Ahg942994 jgi|Araly1|942994|scaffold_603538.1
Length=393
Score = 220 bits (119), Expect = 2e-56
Identities = 283/357 (79%), Gaps = 32/357 (9%)
Strand=Plus/Plus
Query 1 ATGGAATATGAGGAATATGAGGAAGTGTCACTACCGTTGATCCACGAGCATCTTATGATG 60
||||||| ||||| ||||| |||||||||||||||||| ||| |||||| ||||| |
Sbjct 23 ATGGAATCTGAGG---GTGAGGGAGTGTCACTACCGTTGATGCACAAGCATCCTATGACG 79
Query 61 CCGTGTAATTATCTAAC--TAGGGCTGATTGCTGTGGACGCTTCGGTT-TTACCAGTGGT 117
|| || ||| |||| | | || | |||| ||||||| |||| || || ||||| |
Sbjct 80 CCTTGGAATGATCT-GCGGAAAGG-TCATTGTTGTGGACACTTC-CTTGCTATCAGTGAT 136
Query 118 GGTTATTACTGCGAAA-GCTGTAG-CTTCTTGGTTCATAGGAAATGTGTTGAAGATTCCT 175
|||||||||||||||| | ||| | |||||| ||||| | ||||||||| || || |||
Sbjct 137 GGTTATTACTGCGAAATG-TGT-GACTTCTTTGTTCACAAGAAATGTGTAGACGAGTCCA 194
Query 176 CTGAATATATTGAACACCCGTCT-CACTCTGTTCACCCTCTTAAG---CTTCAAAGTAAA 231
| |||||||| |||||||| || ||||| ||||| |||| ||| ||||||||||||
Sbjct 195 CGGAATATATCGAACACCC-ACTCCACTCCATTCACACTCTGAAGCTTCTTCAAAGTAAA 253
Query 232 CCAGACCATATATGTGATATATGTGA--TA----A-G--A--GG-ATCGTGGATCTATGC 279
| ||| || ||||||| ||||||| || | | | || |||||| ||||||||
Sbjct 254 CTAGAGTTTAGATGTGATGTATGTGATGTACGTGATGTCATGGGCATCGTGAATCTATGC 313
Query 280 TATCATTGTGAGATCTGTGACTTC-AATGTGGATCTATACTGTGCAAAGTACCCACC 335
|||| ||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 314 TATCGTTGTGAGATCTGTGACTTCGAA-GTGGATCTATACTGTGCAAAGTACCCACC 369
> Ahg942712 jgi|Araly1|942712|scaffold_603256.1
Length=360
Score = 187 bits (101), Expect = 2e-46
Identities = 252/322 (78%), Gaps = 22/322 (7%)
Strand=Plus/Plus
Query 12 GGAATATGAGGAAGTGTCACTACCGTTGATCCACGAGCATCTTATGATGCCGTGTAATTA 71
||||| ||||||||||||||||||||||||||||||||||| |||||| || || ||| |
Sbjct 23 GGAATCTGAGGAAGTGTCACTACCGTTGATCCACGAGCATCCTATGATACCTTGGAATGA 82
Query 72 TCTAACT-AG-GGCTGATTGCTGTGGACGCTTCGGTTT-TACCAGTGGTGGTTATTACTG 128
||| | | || |||||| |||||||| || || || ||||| ||| ||||||||
Sbjct 83 TCTG-CGGAAAGG-TGATTGTTGTGGACGTTT-GGAAGCTATCAGTGATGGCTATTACTG 139
Query 129 CGAAAGCTGT-AGCTTCTTGGTTCATAGGAAATGTGTTGAAGATTCCTCTGAATATATTG 187
| |||| ||| | |||||| ||||| ||| ||||| ||| | | |||| |||| |||
Sbjct 140 CAAAAGATGTGA-CTTCTTTGTTCACAGGGAATGTACTGA-G-T-CCTCCGAATTTATCA 195
Query 188 AACACCCGTCTCACTCTGTTCACCCTCTTAAGCTTCAAAGTAA-A-CCAGACCATA-T-A 243
||||||| ||||||||||||||| ||||| |||||| |||||| | ||| | ||| | |
Sbjct 196 AACACCCATCTCACTCTGTTCACTCTCTTCAGCTTCGAAGTAATAGCCATA--ATAATTA 253
Query 244 -TGTGATATATGT-GATAAG-AGGATCGTGGATCTATGCTATCATTGTGAGATCTGTGAC 300
|| || ||||| || ||| | ||| ||||||| |||| |||||| |||||||||
Sbjct 254 CTGCAATTTATGTCGA-AAGGAT-ATCACCCATCTATGTTATCGTTGTGATATCTGTGAC 311
Query 301 TTCAATGTGGATCTATACTGTG 322
|| | |||||| |||||||||
Sbjct 312 TTTGAGGTGGATTTATACTGTG 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75456775345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5