BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11560.1
Length=2011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943011 jgi|Araly1|943011|scaffold_603555.1 2822 0.0
Ahg925294 jgi|Araly1|925294|scaffold_200855.1 403 2e-111
Ahg925301 jgi|Araly1|925301|scaffold_200862.1 387 2e-106
> Ahg943011 jgi|Araly1|943011|scaffold_603555.1
Length=1804
Score = 2822 bits (1528), Expect = 0.0
Identities = 1712/1798 (95%), Gaps = 23/1798 (1%)
Strand=Plus/Plus
Query 47 CAATGGTGTTGTCTCGGCGATTTGCTCAAGTGTCGAGTGACGAAGAAGACGATGTACCGA 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 CAATGGTGTTGTCTCGGCGATTTGCTCAAGTGTCGAGTGACGAAGAAGACGATGTACCGA 78
Query 107 TTACTAGGTCTAAGGGAAGAAACTCGGCGAGTCCTGAGGAATCTTTGGGGAAACGGAGGA 166
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 79 TTACTAGGTCTAAGGGAAGAAACTCAGCGAGTCCTGAGGAAACTTTGGGGAAACGGAGGA 138
Query 167 AGCGTaagacggtgaagctatacgaagattttgaagagaaggaagcggataggaagaaga 226
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 139 AGCGTAAGACGGTGAAGCTATACGAAGATTTTGAAGAGAAGGAAGCGGAGAGGAAGAGGA 198
Query 227 agagaaa-ggg--gaa-ta--agga-g--gatgaggatatggcggagggaGATGATGATC 277
||||||| ||| ||| | |||| | ||||||||||||||||| ||| | || ||
Sbjct 199 AGAGAAAGGGGAAGAAGGAGGAGGATGATGATGAGGATATGGCGGA-GGA-A-GAGGAGG 255
Query 278 AGGCGGAGGAAGAAAC-AAATCCGGAGGCTgaagaagaggaagacgaagaagaagaagag 336
||| |||||||| ||| | ||||||| | | | | ||||| |||||||||||||||
Sbjct 256 AGGAGGAGGAAGGAACGCCA-CCGGAGG--G-TG-A-A-GAAGATGAAGAAGAAGAAGAG 308
Query 337 aagCCTGATGATGCGTGTCCTGTTGGTGATTCGGTTAATGTTACGGGTAAAGGAAAAGGG 396
||||||||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||
Sbjct 309 AAGCCTGATGATGCGTGTCCTCTTGGTGAATCGGTTACTATTACGGGTAAAGGAAAAGGG 368
Query 397 AAAAGAACTCATTTCAACCAATTTGCTTATGATGGTAACACTTATGATCTGGAGGTTCCG 456
||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 369 AAAAGAACTCATTTCAAGCAATTTGCGTATGATGGTAACACTTATGATCTGGAGGATCCG 428
Query 457 GTGTTGCTGGTTCCTGAGGACAAAAGTCAAAAACCATATGTTGCAATTATTAAGGATATT 516
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 GTGCTGCTGGTTCCTGAGGACAAAAGTCAAAAACCATATGTTGCAATTATTAAGGATATT 488
Query 517 ACCCAAACTAAAGATGGAAGCATGATGATTCTGGGACAGTGGTTTTATCGCCCCGAAGAA 576
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 489 ACCCAAACTAAAGATGGAAGTATGATGATTCTGGGACAGTGGTTTTATCGCCCCGAAGAA 548
Query 577 GCAGAGAAAAGGGGTGGTGGAAACTGGCAATCAAGTGATACACGAGAACTTTTCTACAGT 636
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 549 GCAGAGAAAAGGGGTGGTGGAAACTGGCAATCAAGTGATACAAGAGAACTGTTCTACAGT 608
Query 637 TTCCATCGTGATGAAGTGCCAGCAGAATCTGTGATGCACAGATGTGTTGTTTATTTTGTC 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TTCCATCGTGATGAAGTGCCAGCAGAATCTGTGATGCACAGATGTGTTGTTTATTTTGTC 668
Query 697 CCGGCCCATAAACAACTTCCAAAACGCAAAAATAACCCTGGATTTATTGTACGAAAGGTC 756
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 669 CCGGCCCATAAACAACTTCCGAAACGCAAAAATAACCCTGGATTTATTGTACGGAAGGTC 728
Query 757 TATGATACCGTTGAAAAGAAGCTGTGGAAGCTGACTGACAAAGACTATGAAGACTCAAAA 816
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TATGATACTGTTGAAAAGAAGCTGTGGAAGCTGACTGACAAAGACTATGAAGACTCAAAA 788
Query 817 CAACGTGAAATCGATGTTCTTGTCAAAAAGACCATGAAC-GTATTGGGTGATCTCCCGGA 875
|||||||||||||| ||||||||| | ||||||||| | |||||||||||||| |||||
Sbjct 789 CAACGTGAAATCGACGTTCTTGTCGACAAGACCATG-TCGGTATTGGGTGATCTTCCGGA 847
Query 876 CCTTGAATCTGAGGATATGCTTGTTGACCAGGAAAATGTGTTGAAGGCCAAAAGATCTTT 935
|||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 848 TCTTGAATCTGAGGAAATGTTTGTTGACCAGGAGAATGTGTTGAAGGCCAAAAGATCTTT 907
Query 936 TCGGAAAGTAAACATAAGTCCTGTGGATGTTAGAAGGGAGGAAGACGCCTCTTTAAAGGC 995
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 TCGGAAAGCGAACATAAGTCCTGTGGATGTTAGAAGGGAGGAAGACGCCTCTTTAAAGGC 967
Query 996 TGAAACTCCTGGAAGTGGTGCGGGTATTTCATCAGAGCATTATGCTATCTTAGAGAAGTT 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TGAAACTCCTGGAAGTGGTGCGGGTATTTCATCAGAGCATTATGCTATCTTAGAGAAGTT 1027
Query 1056 TGATTCACTAACAGGTGATGCTCATCGTGACAAGTGTTTGGGGAAGCTTCTGGAGGCAGT 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 TGATTCACTAACAGGTGATGCTCATCGTGACAAGTGTTTGGGGAAGCTTCTGGAGGCAGT 1087
Query 1116 CCAGCACATATGTTATATCCCTGAGAACAAACAGGCTGGCGACGAAGCAAAGGTGGGTTC 1175
||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1088 CCATCACATATGTTATATCCCAGAGAACAAGCAGGCTGGCGACGAAGCAAAGGTGGGTTC 1147
Query 1176 AGATGCATCTCATCTTGAACAGGATGAGAAAGACACAAAGCCGGAAAATGGAAAGGATGA 1235
||||| ||||||| |||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 1148 AGATGGATCTCATTTTGAACAGGATGGGAAAAATACAAAGCCGGAAAATGGAAAGGATGA 1207
Query 1236 GAAATTTCTCTGGCCAGATGCTGCTGTTCCTCAAGTGTGTGCTCTTGAGAATGCTTCACA 1295
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1208 AAAATTTCTCTGGCCAGATGCTGCTGTTCCTCCAGTGTGTGCTCTTGAGAATGCTTCACA 1267
Query 1296 TGCTTCTCTTGCATCGGATTTTCAGAAATATAACCAAAAGATGAGGACACTGGTTTTCAA 1355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 TGCTTCTCTTGCATCGGATTTTCAGAAATATAACCAAAAGATGAGGACACTGGTTTTCAA 1327
Query 1356 TCTCAAGAACACTGCACTGCTGGCTAGACGACTGCTCAATGGCGAGTTAGAGCCTGCAAC 1415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 TCTCAAGAACACTGCACTGCTGGCTAGACGACTGCTCAATGGCGAGTTAGAGCCTGCAAA 1387
Query 1416 GATTTTGAACATGTCACCCACTGAGTTAAAGGAGGGTCTAACTGCTGACGAGACAACAAA 1475
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1388 GATTTTGAACATGTCACCCACTGAGTTAAAGGAGGGTCTAACTGCTGACGAAACAACAAA 1447
Query 1476 GAAGGAGCCTGATGATGCTGATCGAATGCAGATGACTTCTGTAAGATGCTCGAGATGCAG 1535
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1448 GAAGGAGCCTGATGATGCGGATCGTATGCAGATGACTTCTGTAAGATGCTCGAGATGCAA 1507
Query 1536 TCAATTGACGGTTGGCCTGAGGGATATCATCCAAGCTGGGCATGGAGATCGATATCAGTT 1595
|||||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||| |
Sbjct 1508 TCAATTGAAGGTTGGCCTGAGAGATGTCATCCAAGCTGGGCATGGAGATCGCTATCAGCT 1567
Query 1596 GGAGTGTGTTGACTGTGGCTATTCCTGGTATGCCTCAAGGGATGAGGTATCAACTCTGAC 1655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1568 GGAGTGTGTTGACTGTGGCTATTCCTGGTATGCCTCAAGGGATGAGGTATCAACTCTGAC 1627
Query 1656 AATAGTCACAGATAAACCTGCCCAAGGCACAGAGAAGGAGGATATTGAGAAGAATTTGAC 1715
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 AATAGTCACAGAAAAACCTGCCCAAGGCACAGAGAAGGAGGATATTGAGAAGAATTTGAC 1687
Query 1716 CAGTCCTCGTGAAACTAATAAACCAAAAGACGAAGCCTTGAAGACCAATGACTCGAACGC 1775
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 CAGTCCTCGTGAAACTGAGAAACCAAAAGACGAAGCCTTGAAGACCAATGACTCGAACGC 1747
Query 1776 TGACAACAATCCTGAAGCCTCCAAGAAACCAGAGTAAAGGGTTTCCAACTTTTTAACC 1833
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1748 TGACAACAATCCTGAAGCCTCCAAGAAACCAGAGTAAATGGTTTCCAACTTTT-AACC 1804
> Ahg925294 jgi|Araly1|925294|scaffold_200855.1
Length=400
Score = 403 bits (218), Expect = 2e-111
Identities = 253/270 (94%), Gaps = 2/270 (1%)
Strand=Plus/Plus
Query 946 AACATAAGTCCTGTGGATGTTAGAAGGGAGGAAGACGCCTCTTTAAAGGCTGAAACTCCT 1005
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct 5 AACATAAGTCCTGTTGATGTTAGGAGGGAGGAAGACGCCTC--TAAAGGCTGAAACTCTT 62
Query 1006 GGAAGTGGTGCGGGTATTTCATCAGAGCATTATGCTATCTTAGAGAAGTTTGATTCACTA 1065
||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 63 GGAAGTGGTGCAGGTATTTCATTAGAGCATCATGCTATCTTAGAGAAGTTTGATTCACTA 122
Query 1066 ACAGGTGATGCTCATCGTGACAAGTGTTTGGGGAAGCTTCTGGAGGCAGTCCAGCACATA 1125
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 ACAGGTGATGGTCATCGTGACAAGTGTTTGGGGAAGCTTCTGGAGGCAGTCCAGCACATA 182
Query 1126 TGTTATATCCCTGAGAACAAACAGGCTGGCGACGAAGCAAAGGTGGGTTCAGATGCATCT 1185
| |||||||||||||||||||||||||||| | || ||||||||||||||||||| |||
Sbjct 183 TTTTATATCCCTGAGAACAAACAGGCTGGCAATGATGCAAAGGTGGGTTCAGATGGATCC 242
Query 1186 CATCTTGAACAGGATGAGAAAGACACAAAG 1215
|||| |||||||||||||||||| ||||||
Sbjct 243 CATCATGAACAGGATGAGAAAGATACAAAG 272
> Ahg925301 jgi|Araly1|925301|scaffold_200862.1
Length=272
Score = 387 bits (209), Expect = 2e-106
Identities = 251/271 (93%), Gaps = 4/271 (1%)
Strand=Plus/Plus
Query 946 AACATAAGTCCTGTGGATGTTAGAAGGGAGGAAGACGCCTCTTTAAAGGCTGAAACTCCT 1005
|||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||| |
Sbjct 5 AACATAAGTCCTGTTGATGTTAGGAGGGAGGAAGACGCCAC--TAAAGGCTGAAACTCTT 62
Query 1006 GGAAGTGGTGCGGGTATTTCATCAGAGCATTATGCTATCTTAGAGAAGTTTGATTCACTA 1065
||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 63 GGAAGTGGTGCAGGTATTTCATTAGAGCATCATGCTATCTTAGAGAAGTTTGATTCACTA 122
Query 1066 ACAGGTGATGCTCATCGTGACAAGTGTTTGGGGAAGCTTCTGGAGGCAGTCCAGCACATA 1125
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 ACAGGTGATGGTCATCGTGACAAGTGTTTGGGGAAGCTTCTGGAGGCAGTCCAGCACATA 182
Query 1126 TGTTATATCCCTGAGAACAAACAGGCTGGCGACGAAGCAAAGGTGGGTTCAGATGCATCT 1185
| |||||||||||||||||||||||||||| | || ||||||||||||||||||| |||
Sbjct 183 TTTTATATCCCTGAGAACAAACAGGCTGGCAATGATGCAAAGGTGGGTTCAGATGGATCC 242
Query 1186 CATC-TTGAACAGGATGAGAAAGACACAAAG 1215
|||| || |||| ||||||||||| ||||||
Sbjct 243 CATCATT-AACATGATGAGAAAGATACAAAG 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75609136325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5