BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11570.1
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489979 jgi|Araly1|489979|fgenesh2_kg.6__3113__AT4G11570.1 2152 0.0
> Ahg489979 jgi|Araly1|489979|fgenesh2_kg.6__3113__AT4G11570.1
Length=1442
Score = 2152 bits (1165), Expect = 0.0
Identities = 1337/1418 (94%), Gaps = 20/1418 (1%)
Strand=Plus/Plus
Query 1 GAATCACAATTAAACCCAATTCAGGAAAAAGATTTCATCTTTGAGTTTTTCATTCATCTA 60
||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 1 GAATCACAAATAAACCCAATTCAGGAAAAAGATTTCATCTTTCAG--TTT--TTCATCTA 56
Query 61 -TCGGTTGTTTCCATTCT-CAGGTTT---T-GATTGATAATCATAGATTGGTAGTGATTT 114
|||||||||||| || | ||||||| | |||||| ||||||||||||||||||||||
Sbjct 57 GTCGGTTGTTTCC-TTTTCCAGGTTTCAATCGATTGAGAATCATAGATTGGTAGTGATTT 115
Query 115 GGGAGTTTCTTGATTGTGTAATCATGGCGGAGGCTATTGGTGCTGTATCTTTGGTGGGTC 174
||||||||||||||| | | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 116 GGGAGTTTCTTGATTCTCTCATCATGGCGGATGCTATTGGTGCTGTATCTTTGGTGGGTC 175
Query 175 ATCGACCTTCAATTGTGAGGATTACAGTGAAGAATGAATTGAAAACGCAGAAATCACAGA 234
||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 176 ATCGACCGTCGATTGTGAGGATTACTGTGAAGAATGAATCGAAAACGCAGAAATCACAGA 235
Query 235 GCATTGTTCGCTTTCCGGTGAAGGTAGATTATAGTGCGAAAGGTGTTCTCTCTCATTTGA 294
||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 236 ACATTGTTCGATTTCCGGTGAAGGTAGATTATAGTGCCAAAGGGGTTCTCTCTCATTTGA 295
Query 295 TGACGCAGAGTGTGAAAAAGAATCGAATGTCGGTGTTTCCGATCAGGGCTCTTGCTATGG 354
||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 296 TGATGCAGAGTGTGAAAAAGAATCAAATGTCGGTGTTCCCGATCAGGGCTCTTGCTATGG 355
Query 355 AATTGACGAAAGAGAAGAAGAAAGACGATCGGTTACCGAAAACTTGGAATTATCTTGATT 414
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 356 AATTGACGAAAGAGAAGAAGAAAGACGAGCGGTTACCGAAAACTTGGAATTATCTTGATT 415
Query 415 CTGGTGCTGATGATAAGCCTAGTTTATGGCCTCCTGAGAACAAAGCTGATAAGCCTTCAT 474
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CTGGTGCGGATGATAAGCCCAGTTTATGGCCTCCTGAGAACAAAGCTGATAAGCCTTCAT 475
Query 475 TGCATAATCCTTTACTTAGGCAAGAGCGGATGGGTTGTGGTTGGTTAGGTGCTATATTTG 534
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 476 TGCACAATCCTTTACTTAGGCAAGAGCGGATGGGTTGTGGTTGGTTAGGTGCGATATTTG 535
Query 535 AGTGGGAAGGAGTATTGATTGAAGACAATCCTGACTTGGATAACCAATCATGGCTTACTT 594
|||||||||||||||||||||||||||| |||||| | ||||||||||||||||| || |
Sbjct 536 AGTGGGAAGGAGTATTGATTGAAGACAACCCTGACCTCGATAACCAATCATGGCTGACGT 595
Query 595 TAGCTCAAGAAGAAGGGAAATCTCCTCCTCCGGCTTTTATGCTCAGACGTGTCGAAGGGA 654
||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 596 TAGCTCAGGAAGAAGGGAAATCTCCTCCTCCAGCTTTTATGCTCAGACGTGTTGAAGGGA 655
Query 655 TGAAGAACGAGCAGGCCATATCTGAGGTTCTGTGTTGGTCGAGAGATCCTGTTCAAGTGA 714
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TGAAAAACGAGCAGGCGATATCTGAGGTTCTGTGTTGGTCGAGAGATCCTGTTCAAGTGA 715
Query 715 GAAGGATGGCTAAGCGTAAAGAAGAGATCTTTAAAGCTCTACATGGAGGAGTGTATAGAC 774
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 716 GAAGGATGGCTAAACGTAAAGAAGAGATCTTTAAAGCACTACATGGAGGAGTGTATAGAC 775
Query 775 TAAGAGATGGGTCGCAGGAATTTGTCAATGTCTTGATGAATAATAAGATCCCTATGGCTT 834
||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 776 TAAGAGATGGGTCGCAGGAGTTTGTGAATGTCTTGATGAATAATAAGATCCCAATGGCTT 835
Query 835 TGGTATCGACTCGTCCTC-GGGAAACATTGGAGAATGCAGTTGGATCGATAGGTA-TCAG 892
|||||||||||||||| | |||||||||| ||||||||||||||||||||||||| || |
Sbjct 836 TGGTATCGACTCGTCC-CAGGGAAACATTAGAGAATGCAGTTGGATCGATAGGTATTC-G 893
Query 893 AAAGTTCTTCAGTGTGATAGTTGCATCGGAAGATGTTTACAGAGGTAAACCAGATCCTGA 952
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 894 AAAGTTCTTCAGTGTGATAGTTGCATCAGAAGATGTTTACAGAGGTAAACCGGATCCTGA 953
Query 953 GATGTTCATTTACGCAGCACAGCTTCTTGATTTCATACCGGAACGTTGCATTGTATTTGG 1012
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 954 GATGTTTATTTACGCAGCACAGCTTCTTGATTTCATTCCAGAACGTTGCATTGTATTTGG 1013
Query 1013 AAACTCAAACCAGACCATAGAGGCAGCTCACGATGGGAGGATGAAATGTGTGGCTGTGGC 1072
|||||||||||||||||| || || || ||||||||||||||||||||||| ||||||||
Sbjct 1014 AAACTCAAACCAGACCATTGAAGCGGCCCACGATGGGAGGATGAAATGTGTAGCTGTGGC 1073
Query 1073 GAGTAAACACCCGATTTATGAGCTTGGTGCAGCTGAGCTGGTGGTAAGAAGACTAGACGA 1132
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GAGTAAACACCCCATTTATGAGCTTGGTGCAGCTGAGCTGGTGGTAAGAAGACTAGACGA 1133
Query 1133 GTTATCGATTATCGATTTGAAGAAACTTGCTGATACCGATTTGACAGAGTTCGAACCGGA 1192
|||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 1134 GTTATCGATTATTGATTTGAAGAAACTTGCAGATACCGATTTGACTGAATTCGAACCGGA 1193
Query 1193 ATTGGAGATGGAAAAGGAAGATGAGCGTGAGCTGCCTTCATCGGCTGTAGCAGTTGATGA 1252
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1194 ATTGGAGATGGAAAAGGAAGATGAGCGTGAACTGCCTTCATCGGCTGTAGCAGTTGATGA 1253
Query 1253 T---TTCTGATGGAAGTGATCTTCTGTAATGTTGTACAGTTTTATGGATTTGGA-TTCTT 1308
| ||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||
Sbjct 1254 TAACTTCTGATGGAAGTGAGCTTCTGTAATATTGTACAGTTTTATGGATTTGGAATTCTT 1313
Query 1309 CCTCGTGTAATTCACAAAATGTTATAGTTTCTGTGTATAATTGGAACAAGTTAAACGAGG 1368
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1314 CCTCGTGTAATTCACACAATGTTATAGTTTCTGTGTATAATTGGAACAGGTTAAACGAGG 1373
Query 1369 GATAAATATAAAATGTATACTCCTAGTTTTAATGTTGT 1406
|||||||||||| ||||||||| |||||||||||||||
Sbjct 1374 GATAAATATAAA-TGTATACTCTTAGTTTTAATGTTGT 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55230855250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5