BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11580.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943016 jgi|Araly1|943016|scaffold_603560.1 614 5e-175
Ahg943018 jgi|Araly1|943018|scaffold_603562.1 516 1e-145
Ahg352229 jgi|Araly1|352229|fgenesh1_pg.C_scaffold_6002822 235 4e-61
> Ahg943016 jgi|Araly1|943016|scaffold_603560.1
Length=1135
Score = 614 bits (332), Expect = 5e-175
Identities = 479/547 (88%), Gaps = 21/547 (4%)
Strand=Plus/Plus
Query 465 GATGCCAAATATAGAGAAACTTGCTTTACCAATCTGGTGCTATCAAA-ACGAGAAGTCAT 523
||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct 581 GATGCCAAATATAGAGAAACTTGCTTTACCAATCTGGTGCTATCAAACA-GAGAATTCAT 639
Query 524 TGCGGTTTGCATTCAGTCAATGGAAGAATCTTAAAACATTGATCATCGCTCATGAACACT 583
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 640 TGCGGTTTGCTTTCAGTCAATGGAAGAATCTTAAAACACTGATCATCGCTCATGAACACT 699
Query 584 CTTTCAGCGGGAGATTCGACTTTAAAGCTGTGGGGGAGAGCTGTAGTAACCTAACCAACT 643
|||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 700 CTTTCACCGGGATTTTCGACTTTAAAGCTGTGGGAGAGAGCTGTAGTAACCTAACCAACT 759
Query 644 TAAAATATTTGGGTCGTTTGGAAGAATACACGTCCAGGGAAATAGTGTCTTACCTCCATA 703
|||||||||| |||| |||||||||||||| | |||||||||| ||| |||||||||| |
Sbjct 760 TAAAATATTTAGGTCATTTGGAAGAATACAAGACCAGGGAAATCGTGCCTTACCTCCAGA 819
Query 704 GCCTCAAGAGGTTGAGTTTACGATGCTTTTTGGTCAGTTCT-ATAGCAGTTTACAGGTTT 762
||||||||||||||||||| ||||||| |||||| |||| | | |||||||||| | | |
Sbjct 820 GCCTCAAGAGGTTGAGTTTGCGATGCTCTTTGGTTAGTTATGA-AGCAGTTTACTG-TCT 877
Query 763 A-TCACCGGCCTTCCAAACCTCACGATTCTTAATGTTTCACATTGCAAAAACCCGTATGA 821
| ||| |||||||| |||||||||||| |||||||||||||||||||||||| ||||
Sbjct 878 AATCATCGGCCTTCAAAACCTCACGATGCTTAATGTTTCACATTGCAAAAACTCGTAC-- 935
Query 822 TTATTTTCTTCCTAT-AGCGAAATCTATAGACAATTATGTTATAAC-AGCCGCCACTCAG 879
|| | | |||| | ||| ||||| |||| ||| ||||||||| | |||||||||||
Sbjct 936 TTC----CATGCTATCA-CGAGATCTAGAGACGATTTTGTTATAACGA-CCGCCACTCAG 989
Query 880 AAGCTTGAGAAATTT-ATCACATGTCCTCACGATTGTATGATTTGCAAAGATCGT---TG 935
|||||||| |||||| ||| ||||||||| ||||||| |||||||||||||| | ||
Sbjct 990 AAGCTTGA-AAATTTTATCTTATGTCCTCAGGATTGTAGGATTTGCAAAGATCATCAATG 1048
Query 936 TCGCTACTCATTGTCTTATCTCGCTGAGGTTTGGCGGAATGATGAGATAAAGGAACTTGA 995
| ||||||| | ||| |||| |||||||| |||| |||| |||||||||||||||||||
Sbjct 1049 TTGCTACTCCTGGTCGTATCACGCTGAGGATTGGAGGAACGATGAGATAAAGGAACTTGC 1108
Query 996 ATTCTGA 1002
||||||
Sbjct 1109 TTTCTGA 1115
Score = 568 bits (307), Expect = 4e-161
Identities = 420/472 (89%), Gaps = 17/472 (4%)
Strand=Plus/Plus
Query 3 GACGAAGGTAGAAAGTACTTCAGGAGAAGTTTCAGAATGGGCAGATCTAAACAAAGACAT 62
||| ||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 24 GAC-AAGGTAGAAAG--CTT-AGGAGAAGTTTCAGGATGGGCAGATCTAAACAGAGACAT 79
Query 63 ACTTGAACTTATTTTCAATAAGCTCGACGTGATGGACATTACCATGGGAGCTTCACGTGT 122
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 80 ACTTGAACTTATCTTCAATAAGCTCGAAGTGATGGACATTACCATGGGAGCTTCACGTGT 139
Query 123 CTGCATCTCTTGGTTCCTTGCTTCTCACAATAAAAC-TCTGTGGAACACGGTCGACCTCA 181
||||||||||||||||||||| |||||||| ||||| | |||||||||||||||| || |
Sbjct 140 CTGCATCTCTTGGTTCCTTGCCTCTCACAAAAAAACAT-TGTGGAACACGGTCGATCTTA 198
Query 182 CCAATCTCCAAGAGTTAGATGTCTCCCGCATTTTCAACTTTAAGGATAAAGAAAGACCAA 241
||| |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||
Sbjct 199 CCAGTCTCCAAGAGTTAGATGTCTCCCGCAGTTTCAACTTTAAGGATGAAGAAAAACCAA 258
Query 242 TTTTCTTTTACAAGCACCCGGTTGACCATAAACATGGCCTTACGAATCTTTTGACTAAGA 301
||||||| |||||||||| ||||||| | | | ||||||||||||||||||||||||
Sbjct 259 TTTTCTTCTACAAGCACCGGGTTGACGACGATGAAGGCCTTACGAATCTTTTGACTAAGT 318
Query 302 TCATCTCTCGGTTCTTTCTTGACTTTTTTGAAGTAGAAGGCAGCAT-A-----A---GTC 352
|||||||| |||||||||||||||| | |||||||||| || | || | | |||
Sbjct 319 TCATCTCTTGGTTCTTTCTTGACTTGTATGAAGTAGAAAGCGGGATTATCGGGATTAGTC 378
Query 353 TCATGAATCTATT-AGTTGAGATCAGCAAGTTGAGCCGCATGGCCCCCAAGAATTTGTTC 411
|||||||||| || | ||||||||| |||||||||||||||| |||| |||||||| |||
Sbjct 379 TCATGAATCTGTTGA-TTGAGATCACCAAGTTGAGCCGCATGACCCCGAAGAATTTATTC 437
Query 412 TTTAACTTCAATTCCTATATACAGGAAAATGGTCTCAAGTTCGCTGCTGAGA 463
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 438 TTTAACTTTAATTCCTATATACAAGAAAATGGTCTCAAGTTTGCTGCTGAGA 489
> Ahg943018 jgi|Araly1|943018|scaffold_603562.1
Length=763
Score = 516 bits (279), Expect = 1e-145
Identities = 391/444 (88%), Gaps = 12/444 (3%)
Strand=Plus/Plus
Query 20 CTTCAGGAGAAGTTTCAGAATGGGCAGATCTAAACAAAGACATACTTGAACTTATTTTCA 79
||| ||||||||||||| ||||||||||| |||||| |||||| ||||||||||| ||||
Sbjct 38 CTT-AGGAGAAGTTTCAAAATGGGCAGATGTAAACAGAGACATTCTTGAACTTATCTTCA 96
Query 80 ATAAGCTCGACGTGATGGACATTACCATGGGAGCTTCACGTGTCTGCATCTCTTGGTTCC 139
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 97 ATAAGCTCGACTTGATGGACATTACCATGGGAGCTTCACGTGTATGCATCTCTTGGTTCC 156
Query 140 TTGCTTCTCACAATAAA-ACTCTGTGGAACACGGTCGACCTCACCAATCTCCAAGAGTTA 198
|||| ||| |||| || ||| ||||||||||||||||||||||||| || ||||| |||
Sbjct 157 TTGCCTCTAACAA-AAGTACTTTGTGGAACACGGTCGACCTCACCAAGCTTCAAGAATTA 215
Query 199 GATGTCTCCCGCA-TTTTCAACTTTAAG-GATAAAGAAAGACCAATTTTCTTTTACAAGC 256
||| ||||| || |||| ||||||| | ||||| | ||||||| |||| ||||||||
Sbjct 216 GATATCTCCAACAGTTTTGT-CTTTAAGAG-TAAAGTACGACCAATCTTCTATTACAAGC 273
Query 257 ACCCGGTTGACCATAAACATGGCCTTACGAAT---CTTTTGACTAAGATCATCTCTCGGT 313
||||||||||| | | | |||||| | ||| |||||||||||||||||||| ||||
Sbjct 274 ACCCGGTTGACGACGATGAAGGCCTTTCTAATAATCTTTTGACTAAGATCATCTCCCGGT 333
Query 314 TCTTTCTTGACTTTTTTGAAGTAGAAGGCAGCATAAGTCTCATGAATCTATT-AGTTGAG 372
|||||| ||||| |||||||||| ||||| |||||||||||||||||||||| | |||||
Sbjct 334 TCTTTCATGACTATTTTGAAGTACAAGGCGGCATAAGTCTCATGAATCTATTGA-TTGAG 392
Query 373 ATCAGCAAGTTGAGCCGCATGGCCCCCAAGAATTTGTTCTTTAACTTCAATTCCTATATA 432
||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 393 ATCAGCAAGTTGAGCTGCATGACCCCGAAGAATTTGTTCTTTAACTTCAATTCCTATTTA 452
Query 433 CAGGAAAATGGTCTCAAGTTCGCT 456
|| |||||||||||||||||||||
Sbjct 453 CAAGAAAATGGTCTCAAGTTCGCT 476
Score = 292 bits (158), Expect = 3e-78
Identities = 224/256 (88%), Gaps = 4/256 (2%)
Strand=Plus/Plus
Query 550 AATCTTAAAACATTGATCATCGCTCATGAACACTCTTTCAGCGGGAGATTCGACTTTAAA 609
|||||||||||| |||||||||||||||||| |||||||| ||||| ||| || ||| |
Sbjct 477 AATCTTAAAACACTGATCATCGCTCATGAACCCTCTTTCACCGGGACATTTGAGTTTCAG 536
Query 610 GCTGTGGGGGAGAGCTGTAGTAACCTAACCAACTTAAAATATTTGGGTCGTTTGGAAGAA 669
|||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 537 GCTGTGGGAGAGAGTTGTAGTAACCTAACCAACTTAAAATATTTGGGTCATTTGGAAGAT 596
Query 670 TACACGTCCAGGGAAATAGTGTC-TTACCTCCATAGCCTCAAGAGGTTGAGTTTACGATG 728
|||| | ||| ||||| ||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 597 TACAAGGCCATTGAAATGGTG-CGTTACCTCCATAGCCTCAAGAGGTTGAGTTTACGGTG 655
Query 729 CTTTTTGGTCAGTT-CTATAGCAGTTTACAGGTTTATCACCGGCCTTCCAAACCTCACGA 787
|| |||||| ||| | ||||||||||| | || |||| |||||||| |||||||||||
Sbjct 656 CTCTTTGGTTAGTAACC-TAGCAGTTTACCGCTTAATCATCGGCCTTCGAAACCTCACGA 714
Query 788 TTCTTAATGTTTCACA 803
|||||||||||| |||
Sbjct 715 TTCTTAATGTTTTACA 730
> Ahg352229 jgi|Araly1|352229|fgenesh1_pg.C_scaffold_6002822
Length=975
Score = 235 bits (127), Expect = 4e-61
Identities = 368/478 (77%), Gaps = 42/478 (9%)
Strand=Plus/Plus
Query 286 AATCTTTTGACTAAGATCATCTCTCGGTTCTTTC-TTGACTTTTTTGAAGTAGAAGGCAG 344
|||||||| | |||||| | | | | ||| ||| || |||||| ||||||| || | |
Sbjct 259 AATCTTTTAATTAAGATGAGC-CAC--TTC-TTCTTTAACTTTTGTGAAGTA-AAAG--G 311
Query 345 CATAAGTCTCATGAATCTATTAG-TTGAGATCAGC-AAGTTGAGCCGCATGGCCCCCAAG 402
||||| ||| ||||||||| | ||||||||| | |||||||| |||| |||||| |||
Sbjct 312 CATAAAACTCCGGAATCTATT-GATTGAGATCA-CTAAGTTGAGTCGCACGGCCCCAAAG 369
Query 403 AATTTGTTCTTTAACTTCAATTCCTATATACAGGAAAA--TGG-TCTCAAGTTCGCTGCT 459
||||| ||||||||||| ||||| ||||| | |||| || ||||| ||| | ||||
Sbjct 370 AATTTATTCTTTAACTTTTATTCCAATATA-A--AAAAGCAGGATCTCATGTTTGTTGCT 426
Query 460 GAGAAGATGCCAAATATAGAGAAACTTGCTTTACC--AATC-TGGT-GCTAT-CAAAAC- 513
|||| ||||||||| |||||||| ||||||||||| || |||| || | || |
Sbjct 427 GAGAGGATGCCAAACATAGAGAAGCTTGCTTTACCGGTTTCATGGTCACTGTGTAATGCG 486
Query 514 GAGAAGTCATTGCGGTTTGCATTCAGTCAATGGAAGAATCTTAAAACATTGATCATCGCT 573
| ||| ||||| ||||||| || ||||| |||||||||||||||||| ||||||| |||
Sbjct 487 GTGAACTCATTTAGGTTTGCGTTTAGTCAGTGGAAGAATCTTAAAACACTGATCATGGCT 546
Query 574 CATGAA-CACTCTTTCAGC-GG--G---AGATTCGACTTTAAAGCTGTGGGGGAGAGCTG 626
||| || ||| ||||| | || | | ||| || ||| || |||||| |||| |||
Sbjct 547 CAT-AATGACTTTTTCATCTGGCCGTACACATTTGAGTTTCGAGTTGTGGGAGAGAACTG 605
Query 627 TAGTAACCT-AACCAACTTAAAATATT-TGGGTCGTTTGGAAGAATACACG-TCCAG-GG 682
|||||||| || ||||| || ||| ||||| ||||| | || | | | | | | ||
Sbjct 606 CAGTAACCTGAA-TAACTT-GAAGATTATGGGTTATTTGG-ATAACA-AAGATGCTGTGG 661
Query 683 AAATAGTGTC-TTACCTCCATAGCCTCAAGAGGTTGAGTTTACGATGCTTTTTGGTCA 739
|||| ||| | ||||||||| |||||||||||||||||||||| ||||| ||||||||
Sbjct 662 AAATCGTG-CGTTACCTCCAGAGCCTCAAGAGGTTGAGTTTACAATGCTCTTTGGTCA 718
Score = 167 bits (90), Expect = 2e-40
Identities = 149/176 (85%), Gaps = 10/176 (6%)
Strand=Plus/Plus
Query 22 TCAGGAGAAGTTTCAGAATGGGCAGA-TCTAAACA-AAGACATACTTGAAC-TTATTTTC 78
||| |||||| |||| |||||||| | |||| ||| || ||||||||| | |||| |||
Sbjct 19 TCAAGAGAAGATTCAAAATGGGCA-ACTCTAGACAGAA-ACATACTTG-CCATTATCTTC 75
Query 79 AATAAGCTCGACGTGATGGACATTACCATGGGAGCTTCACGTGTCTGCATCTCTTGGTTC 138
||||||||||| | ||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 76 GATAAGCTCGACATAATGGACATTACCATGGGAGCTTCACGTGTATGCATCTATTGGTTC 135
Query 139 CTTG-CTTCTCACAATAAAACTCTGTGGAACACGGTCGACCTCACCAA-TCTCCAA 192
|||| || ||||||| | |||||| |||||||| |||||||| |||| | |||||
Sbjct 136 CTTGTCT-CTCACAACATAACTCTATGGAACACCATCGACCTCTCCAAGT-TCCAA 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5