BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11590.1
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489981 jgi|Araly1|489981|fgenesh2_kg.6__3115__AT4G11590.1 876 0.0
Ahg943017 jgi|Araly1|943017|scaffold_603561.1 379 2e-104
> Ahg489981 jgi|Araly1|489981|fgenesh2_kg.6__3115__AT4G11590.1
Length=1074
Score = 876 bits (474), Expect = 0.0
Identities = 587/639 (92%), Gaps = 17/639 (3%)
Strand=Plus/Plus
Query 546 GGAAAAAATGCAACGTCATGACGGTCGAACTCG-A-A-T---A-TTACAACTATCATCTC 598
||||||||||||||||||||| ||||||||||| | | | | ||||||||||||||||
Sbjct 443 GGAAAAAATGCAACGTCATGATGGTCGAACTCGAATATTACAAGTTACAACTATCATCTC 502
Query 599 AACATCAAGTATTCCCATTGGGAGTTAAAAAGAAACCATGGAGAATGATTGATTATACAA 658
||||||||||| || |||||||| || ||||||||| |||||||||||||||||||| ||
Sbjct 503 AACATCAAGTAGTCACATTGGGAATTGAAAAGAAACAATGGAGAATGATTGATTATAGAA 562
Query 659 CTCCTCACGGTCCTGTGCTGAACAGTGTGTGCATAGATGGTGTTTTATATTATGTTGCTT 718
||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| |
Sbjct 563 CTCCTCACGGTCCTGTGCTTAACAGTGTGTGCATAGATGGAGTTATATATTATGTTGCGT 622
Query 719 TTACGGGCGA-AGATTTGTCACAGCTGAGCTTAATGAGATTCGATTTGGGGTCTGAAAAG 777
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TTACGGGC-ACTGATTTGTCACAGCTGAGCTTAATGAGATTCGATTTGGGGTCTGAAAAG 681
Query 778 TTGGATCTTTTTACTAGTTTACCCGCGGACTTTCCAGCTGCATTTCTACATGGTTTCACT 837
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 682 TTGGATCTTTTTACTAGTTTATCCGCGGACTTTCCAGCTGCATTTCTACATGGTTTCAAT 741
Query 838 TTGATGAGGTACAAGGGGAAAGTAGCCTTAGCCACTAAAACTTTATTTATTGGTATT-GA 896
|||||||| |||||||||||||||||||||||||||||||||| ||||| || ||| ||
Sbjct 742 TTGATGAGCTACAAGGGGAAAGTAGCCTTAGCCACTAAAACTTCATTTAATGA-ATTTGA 800
Query 897 AGTGTGGGTTTTGGATCAGCAAGCCGAAATTCATGGATGGTTGAAGAAAAGTTTCAGTAT 956
||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 801 AGTGTGGATTTTGGATCAGCAAGTCGAAACTCATGGATGGTTGAAGAAAAGTTTCAGTAT 860
Query 957 CAAAGGTGTTAGGAGGTGGT-TATTTTGTGATTTATTTATCACAGGCACTACTCATACAG 1015
||||||| || || || | |||| || | |||||||||||||||||||||||||||||
Sbjct 861 CAAAGGTA--AGAAGTTGCTATATTCTG-G-TTTATTTATCACAGGCACTACTCATACAG 916
Query 1016 GTGAGTTTATTTTGGCACCACGGTTCTATTCTAATAGCTTTTATGTTATCTATTACAATC 1075
|||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 917 GTGAGTTTGTTTTGGCACTACGGTTCTATTCTAATAACTTTTATGTTATCTATTACAATC 976
Query 1076 CCGACACGAAAAGTTTAAGAAAAACCAAGGTTGAAGTACACGGAGGCTATGACTTCAAGC 1135
|||||||||||||||| ||||||||||||||| ||||||||| || |||||| |||||||
Sbjct 977 CCGACACGAAAAGTTTTAGAAAAACCAAGGTTCAAGTACACGCAGACTATGAGTTCAAGC 1036
Query 1136 ATCGGGAAACAAAAGCAATGGTTTTTCCGGATTATGTAG 1174
|||||||||||||||||||| |||||| |||||||||||
Sbjct 1037 ATCGGGAAACAAAAGCAATGTTTTTTC-GGATTATGTAG 1074
Score = 331 bits (179), Expect = 6e-90
Identities = 251/285 (88%), Gaps = 7/285 (2%)
Strand=Plus/Plus
Query 219 GTCTTCGTTGCAGCCGCGTCTACTAGTCGTGTTTATTGATTTAAATAAACAATGGAACTG 278
|||||||||||| || ||||||||||||||||||||||||||| ||| |||| |||||||
Sbjct 162 GTCTTCGTTGCAACCTCGTCTACTAGTCGTGTTTATTGATTTAGATAGACAACGGAACTG 221
Query 279 CGAAGATTGGTACTTCTTCTCGCTCTCTTCATCAACAACGTCTTATCTATCACGTGTTAC 338
|||| ||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 222 CGAAAATTGGTACTTCTTTTCGCTGTCTTCATCATCAACGTCTTATCTATCACGTGTTAC 281
Query 339 ATGTCCCTT-TCCAGATTATGTGCACTATTCTCATTATGTTAATGGCTTGATAAGCCATG 397
||||| || ||||||||||||| ||||| || ||||||||||||||||||||||| ||
Sbjct 282 ATGTCT-TTCTCCAGATTATGTGTACTATACTTATTATGTTAATGGCTTGATAAGCTTTG 340
Query 398 GATATGGTCTAGAGAAATTCATAACTAACCCTAGCACCGGTAAATC---CACAGTTTTAG 454
|||||||||||||||||| |||| ||||||||||||||||||| | |||||||||||
Sbjct 341 GATATGGTCTAGAGAAATACATAGCTAACCCTAGCACCGGTAACCCTAGCACAGTTTTAG 400
Query 455 GGAGAGTCCAAACCAATAGTAAGGTTGCGCA-ATGTTTTTTGGGG 498
| || |||||||||| |||| ||| || || | ||||||| |||
Sbjct 401 GTAGGGTCCAAACCAGGAGTACGGTCGCACATA-GTTTTTTCGGG 444
Score = 220 bits (119), Expect = 1e-56
Identities = 151/166 (91%), Gaps = 3/166 (2%)
Strand=Plus/Plus
Query 1 ATGACGACAAGTCAATTCAAGAAGAGTAAATTAATAGAGAACAATTCTCAGTCTCTTGAA 60
|||||||||||||||| ||||||||| || |||||||||||||||||||||||| |||
Sbjct 1 ATGACGACAAGTCAATCCAAGAAGAG-CAA--AATAGAGAACAATTCTCAGTCTCTCGAA 57
Query 61 ATCTTAAAAGAGAAGAACTTCAATGATGTTCCTTTGGACGTAGCCATAGAGATATTTATG 120
|||| | |||||||||||||||||| |||||||||||||| || || ||||||||||||
Sbjct 58 ATCTCGAGAGAGAAGAACTTCAATGACGTTCCTTTGGACGTTGCGATGGAGATATTTATG 117
Query 121 AGATTGCCTGTGAAATCCGTAGCTAGGTTTCTCCTACTCTCAAAGT 166
||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 118 AGATTGCCTGTGAAATCAGTAGTTAGGTTTCTCCTACTCTCAAAGT 163
> Ahg943017 jgi|Araly1|943017|scaffold_603561.1
Length=985
Score = 379 bits (205), Expect = 2e-104
Identities = 353/421 (84%), Gaps = 24/421 (6%)
Strand=Plus/Plus
Query 385 TTGATAAGCCATGGATATGGTCTAGAGAAATTCATAACTAACCCTAGCACCGGTAAATCC 444
|||||||||| |||||||||||||||||||| |||| ||||||||||||||| || |||
Sbjct 255 TTGATAAGCCTTGGATATGGTCTAGAGAAATGCATAGCTAACCCTAGCACCGATACCTCC 314
Query 445 ACAGTTTTAGGGAGAGTCCAAACCAATAGTAAGGTTGCGCAATGTTTTTTGGGGTATGAT 504
|| |||||||| ||||||||||| | ||||| | || ||| ||||||| ||||| |||
Sbjct 315 ACGGTTTTAGGTAGAGTCCAAACTAGTAGTACGAACGCACAAAGTTTTTTCGGGTACGAT 374
Query 505 CCGGTTAATGATGAATACAAACTATTGGTATTGTGCATGAAGGAAAAAATGCAACGTCAT 564
| |||||||||||||||||||||||||||| ||| ||||| | | || || | | || |
Sbjct 375 CAGGTTAATGATGAATACAAACTATTGGTAATGTACATGA-GCATGAA-TGGACC-TCCT 431
Query 565 GACGGTCGAACTCGAATATTACAACTATCATCTCAACATCAAGTATTCCCATTGGGAGTT 624
| | ||| |||||||| || ||| ||| | ||||||| || ||||||||| |
Sbjct 432 G--G-TCG---TCGAATAT--CATCTA--ATC--A---TCAAGTAGTCACATTGGGAGCT 476
Query 625 AAAAAGAAACCATGGAGAATGATTGATTATACAACTCCTCACGGTCCTGTGCTGAACAGT 684
||||| ||||||||||||||||||||||||| |||||||||| |||||| | ||||||
Sbjct 477 AAAAACAAACCATGGAGAATGATTGATTATATAACTCCTCACCAACCTGTGTTTAACAGT 536
Query 685 GTGTGCATAGATGGTGTTTTATATTATGTTGCTTTTACGGGCGA-A-GATTTGTCACA-G 741
|| ||||||||||||||||| ||||||||||||||||||||||| | | ||| ||||| |
Sbjct 537 GTATGCATAGATGGTGTTTTGTATTATGTTGCTTTTACGGGCGATAAG-TTT-TCACAAG 594
Query 742 CTGAGCTTAATGAGATTCGATTTGGGGTCTGAAAAGTTGGATCTTTTTACTAGTTTACCC 801
||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 595 -TGAGCTTAATGAGATTCAATTTGAGGTCTGAAAAGTTGGATATTTTTACTAGTTTATCC 653
Query 802 G 802
|
Sbjct 654 G 654
Score = 220 bits (119), Expect = 1e-56
Identities = 209/251 (83%), Gaps = 11/251 (4%)
Strand=Plus/Plus
Query 856 AAAGTAGCCTTAGCCACTAAAACT-TTATTTATTGGTATTGAAGTGTGGGTTTTGGATCA 914
|||||||||||||||||||||||| | |||| | ||||| ||||| ||||||||||
Sbjct 657 AAAGTAGCCTTAGCCACTAAAACTCCAAGTTATAAAT-TTGAACTGTGGATTTTGGATCA 715
Query 915 GCAAGCCGAAATTCATGGATGGTTGAAGAAAAGTTTCAGTATCAA-AGGTGTTAGGAGGT 973
||| |||||| |||||||||||||||||||||||||||||||| || || || | ||
Sbjct 716 GCATGCCGAAGCACATGGATGGTTGAAGAAAAGTTTCAGTATCAATAGTTGGAAG-ATGT 774
Query 974 GGTTATT-TTG--TGATTTATTTATCAC-AGGCACTACTCATACAGGTGAGTTTATTTTG 1029
||| ||| | |||||||||||| || |||||||||||||||||| |||||||||
Sbjct 775 TATTACGGTTGGATAATTTATTTATCAGGAG-CACTACTCATACAGGTGATTTTATTTTG 833
Query 1030 GCACCACGGTTCTATTCTAATAGCTTTTATGTTATCTATTACAATCCCGACACGAAA-AG 1088
|||||||||| ||||||||||| |||||||||||| |||| ||||| ||||| ||| ||
Sbjct 834 GCACCACGGTACTATTCTAATAAATTTTATGTTATCCATTATAATCCGGACAC-AAATAG 892
Query 1089 TTTAAGAAAAA 1099
||| ||| |||
Sbjct 893 TTTTAGAGAAA 903
Score = 185 bits (100), Expect = 5e-46
Identities = 142/162 (88%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 11 GTCAATTCAAGAAGAGTAAATTAATAGAGAACAATTCTCAGTCTCTTGAAATCTTAAAAG 70
|||||| |||||||||| || ||| |||||||||||||||||||||||||||| |||||
Sbjct 1 GTCAATCCAAGAAGAGT-AA--AATGGAGAACAATTCTCAGTCTCTTGAAATCTCAAAAG 57
Query 71 AGAAGAACTTCAATGATGTTCCTTTGGACGTAGCCATAGAGATATTTATGAGATTGCCTG 130
|||| ||||| |||||||| ||||||| || || ||||||| ||||||||| ||||
Sbjct 58 AGAATCACTTCGCTGATGTTCGTTTGGACCTAATGATCGAGATATGTATGAGATTTCCTG 117
Query 131 TGAAATCCGTAGCTAGGTTTCTCCTACTCTCAAAGTTTTGGG 172
||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 118 TGAAATCAGTAGCTAGGTTTCTCCTTCTCTCAAAGTTTTGGG 159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5