BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11600.1
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489982 jgi|Araly1|489982|fgenesh2_kg.6__3116__AT4G11600.1 1269 0.0
> Ahg489982 jgi|Araly1|489982|fgenesh2_kg.6__3116__AT4G11600.1
Length=963
Score = 1269 bits (687), Expect = 0.0
Identities = 881/972 (91%), Gaps = 24/972 (2%)
Strand=Plus/Plus
Query 38 TTTTGCAAATGCTTCGCTCCTCAATTCGACTTCTCTATATAAGAAGAACCAGTCCTCTGC 97
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1 TTTTGCAAATGCTTCGATCCTCAATTCGACTTCTCTATATAAGAAGAACCAATCCTCTCC 60
Query 98 TTCGAAG-TT-T-atcatcatcatcatcatca---tca---tcatcaAAACGATTCGATT 148
||||||| || | ||||||||||||||||||| ||| ||||||||||||||| |||
Sbjct 61 TTCGAAGTTTATCATCATCATCATCATCATCATCTTCATCTTCATCAAAACGATTCAATT 120
Query 149 CTGCGAAACCACTTTTCAATTCTCATCGGATTATTTCTCTTCCAATTTCTACAACGGGAG 208
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 121 CTGCGAAACCACTTTTCAATTCTCATCGGATTATTTCTCTTCCAATCTCTACAACGGGTG 180
Query 209 CTAAACTATCTAGATCGGAGCATTCAATGGCTGCTTCTTCCGAACCCAAATCTCTTTACG 268
||||||| ||||||||||| |||||||||||| |||||||||||||||||||| | ||||
Sbjct 181 CTAAACTTTCTAGATCGGAACATTCAATGGCTACTTCTTCCGAACCCAAATCTATCTACG 240
Query 269 ATTTCACCGTCAAGGATGCTAAGGGAAACGATGTTGATCTAAGCATCTACAAAGGGAAGG 328
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 ATTTCACCGTCAAGGATGCTAAGGGAAACGATGTTGATCTAAGCATCTACAAGGGGAAGG 300
Query 329 TTCTTTTGATTGTGAACGTTGCTTCTCAATGTGGCTTGACTAATTCGAATTATACTGAGC 388
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 301 TTCTTTTGATTGTGAACGTTGCTTCTCAATGTGGCTTGACTAATTCGAACTATACTGAGC 360
Query 389 TTGCGCAGCTGTATGAGAAGTACAAAGGCCATGG-TTTCGAGATTCTTGCGTTTCCGTGT 447
|||| ||||| |||||||||||||||| |||||| ||| |||||||||||||| ||||||
Sbjct 361 TTGCACAGCTTTATGAGAAGTACAAAGACCATGGGTTT-GAGATTCTTGCGTTCCCGTGT 419
Query 448 AACCAGTTTGGGAATCAAGAGCCTGGTACTAATGAAGAGATTGTTCAGTTTGCTTGTACT 507
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 420 AACCAGTTTGGGAATCAAGAACCTGGTACAAATGAAGAGATTGTTCAGTTTGCTTGTACC 479
Query 508 CGTTTCAAGGCTGAGTACCCGATTTTCGACAAGGTTGATGTTAACGGTGACAAAGCTGCC 567
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 480 CGTTTCAAGGCCGAGTACCCGATTTTCGATAAGGTTGATGTGAACGGTGACAAAGCTGCC 539
Query 568 CCAGTCTACAAGTTTCTGAAATCAAGCAAAGGCGGGCTCTTTGGAGACGGCATTAAGTGG 627
||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 540 CCAATCTACAAGTTTCTGAAATCAAGCAAAGGCGGGCTTTTTGGAGACGGCATCAAGTGG 599
Query 628 AACTTCGCAAAGTTCTTGGTTGACAAAGATGGAAATGTTGTCGATCGTTTCGCACCAACT 687
|||||||| |||||||||||| |||||||||||||||| ||||| |||| ||| ||||||
Sbjct 600 AACTTCGCTAAGTTCTTGGTTAACAAAGATGGAAATGTCGTCGACCGTTACGCGCCAACT 659
Query 688 ACCTCACCTCTCAGCATTGAGAAGGATGTGAAGAAGTTGTTGGGAGTTACTGCTTAAGCA 747
|| || |||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 660 ACTTCTCCTCTCAGCATTGAGAAGGACCTGAAGAAACTGTTGGGAGTTACTGCTTAAGCG 719
Query 748 AGGCAAGATTGCATAATTAGACAAATAAAA-GCTCATTAGTATTGTATTACCAATACTGT 806
||| |||| |||| ||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 720 AGGAAAGAG-GCATTATTAGACAAATAAAAAGCTCATTAGTATTGTGTTACCAATACTGT 778
Query 807 GTAGTAAGCTGAGTTCGTGAGTGTGTGCCTT-TGGGACCGCG-TACAATTATAATCCGTT 864
|| ||||| ||||||||||| ||| | ||| | || || |||| ||||||||||||
Sbjct 779 GTTGTAAGATGAGTTCGTGAATGTCTTTCTTATTT--CCTCGGTACAGTTATAATCCGTT 836
Query 865 TTTTAGCGGCCAAACTATGTAATAATCGTAGATCTAAATATCAGATTTCCCGTTACCTTA 924
||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||| | |
Sbjct 837 TTT-AGCGGCCAAACTATGTAATAAACGTAGATCTAAATTTCAGATTTCCCTTTACGT-A 894
Query 925 CAATTTGGA-TC-AGTCTTTGTTACCAAAGCATGAAACTGTGTCTCCTACAACAACCGAA 982
||||| || | | || |||| |||||||||||||| | |||||||||||||| ||
Sbjct 895 TAATTTTGAATATA-TCAGAGTTATCAAAGCATGAAACTCT--CTCCTACAACAACCTAA 951
Query 983 CAGTCTCTACAT 994
|| |||||||||
Sbjct 952 CACTCTCTACAT 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37017352407
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5