BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11610.1
Length=3466
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489983 jgi|Araly1|489983|fgenesh2_kg.6__3117__AT4G11610.1 5011 0.0
Ahg488114 jgi|Araly1|488114|fgenesh2_kg.6__1248__AT5G12970.1 285 1e-75
> Ahg489983 jgi|Araly1|489983|fgenesh2_kg.6__3117__AT4G11610.1
Length=3377
Score = 5011 bits (2713), Expect = 0.0
Identities = 3084/3262 (95%), Gaps = 29/3262 (1%)
Strand=Plus/Plus
Query 1 ACTTGAAATCTAAGTTGGTCTTACCATAATTATTCAATTTTTCTCCACAA-CT-T-ACAT 57
|||||||||||||||||||||| ||| ||||||| || ||||||||||| || | | ||
Sbjct 1 ACTTGAAATCTAAGTTGGTCTTTCCAAAATTATTTAA-GTTTCTCCACAACCTATAAAAT 59
Query 58 ATACTTATGAATGCACATGCATGTGCATAT-AAT-TT-TATTATGTAGTATATAGTTCCA 114
|||| ||||||||| ||||||||||| || ||| || || ||||||||||||| || ||
Sbjct 60 ATACCAATGAATGCATATGCATGTGCAAATAAATATTATAATATGTAGTATATAATTTCA 119
Query 115 AGACCC-TTTATCAAAATTGAAGTTGTGAGCTTGATTCTACTCTAAGTCTCTCTTTCACT 173
|||||| |||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 120 AGACCCTTTTATCAAAATTGAAGTTGTGAGCTTGAATCTACTCTAAGCCTCTC-TTCACT 178
Query 174 TTTAAGTGTTC-----GAT----C--AA-AAGATCGACGGTCATGATGATGAGCAATCTA 221
||||||||||| ||| | || |||||||||||||||||||||||||||||||
Sbjct 179 TTTAAGTGTTCGATTTGATCGAACAAAACAAGATCGACGGTCATGATGATGAGCAATCTA 238
Query 222 AAACTCGGCGTGGACGTGATCGGAGCACACAATCTCTTCCCAAAAGATGGGCAAGGAACA 281
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 239 AAACTCGGCGTGGACGTGATCGGAGCCCACAATCTCTTCCCAAAAGATGGGCAAGGAACA 298
Query 282 TCGAACGCTTACGTTGAGCTTTACTTCGATGGTCAAAAGCACCGAACAACGATCAAAGAT 341
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCGAATGCTTACGTTGAGCTTTACTTCGATGGTCAAAAGCACCGAACAACGATCAAAGAT 358
Query 342 CGAGACTTAAACCCGGTTTGGAACGAGAGTTTCTTCTTCAACATCTCAGATCCATCTCGT 401
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 359 CGAGACTTAAACCCGGTTTGGCATGAGAGTTTCTTCTTCAACATCTCAGATCCATCTCGT 418
Query 402 CTTCACTATCTCAATCTTGAAGCTCAAGCTTATAGTCACAACAGATCTACTAATGGACGT 461
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 419 CTTCACTATCTCAATCTTGAAGCTCAAGCGTATAGTCACAACAGATCTACTAATGGTCGT 478
Query 462 TCCTTCCTTGGCAAGGTATCTCTCTCAGGGACCTCTTTTGTTCCTCATTCTGATGCTGTT 521
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 479 TCCTTCCTTGGCAAGGTATCGCTTTCAGGGACATCTTTTGTTCCTCATTCTGATGCTGTT 538
Query 522 GTTCTTCACTTTCCCATGGAGAGACGTGGGATCTTTTCTCGTGTGAGAGGTGAGCTCGGC 581
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 539 GTTCTTCACTTTCCCTTGGAGAGACGTGGGATCTTCTCTCGTGTGAGAGGTGAGCTCGGC 598
Query 582 TTGAAAGTTTACATAACCGACGAGGCTTCTTTAAAATCCTCTGCTGCTTCTAATGATCAT 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTGAAAGTTTACATAACCGACGAGGCTTCTTTAAAATCCTCTGCTGCTTCTAATGATCAT 658
Query 642 CCAGATAATCTAGATCCGGCGCTCCCAAGAGCAATGAATGTAGAACATAGATCCGACAAA 701
| ||||||||||||||| | | ||||||||||||| |||||||||||||||||||||
Sbjct 659 CTAGATAATCTAGATCC-G-G----CAAGAGCAATGAAGGTAGAACATAGATCCGACAAA 712
Query 702 CGACATGTGTTTTACAATCTCCCAAACAGTGCTCAAGAACATCAACACCAACATCCACAA 761
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 713 CGACATGTGTTTTACAATCTCCCAAACAGTGCTCAAGAACATCAACAACAACATCCACAA 772
Query 762 GGGCCTAACCAATCCTCTTCCTTAGCCGCTGAACAAGATAATCATAACGAACATCATCAC 821
|||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 773 GGGCATAACCAGTCCTCTTCCTTAGCCGCTGAACAAGATCATCATAACGAACATCATCAC 832
Query 822 CATTACGTACCAAAGCATCAAGTAGACGAGATGAGATCCGAACCAGCGCGGCCCTCGAAG 881
|||||||| |||||||| |||||| ||||||||||| |||||||||| | || ||||||
Sbjct 833 CATTACGTGCCAAAGCACCAAGTAAACGAGATGAGACCCGAACCAGCACCTCCTTCGAAG 892
Query 882 CTAGTCCATGCGCATTCCATTGCTTCGGCTCAGCCTGCTGATTTCGCGCTTAAGGAGACA 941
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 893 CTAGTCCATGCGCATTCCATTGCTTCGGCTCAGCCTGCAGATTTCGCGCTTAAGGAAACA 952
Query 942 AGCCCGCATCTCGGTGGTGGAAGAGTCGTTGGTGGGCGTGTTATACACAAAGACAAAACC 1001
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||
Sbjct 953 AGCCCGCATCTCGGTGGTGGAAGAGTCGTTGGTGGGCGTGTTATCCACAAGGACCAAACC 1012
Query 1002 GCTACGAGTACTTATGATCTTGTCGAGAGAATGTATTTCCTTTATGTCCGCGTTGTCAAA 1061
||||| ||||||||||||||||| ||||||||||||||||||||||| || || ||||||
Sbjct 1013 GCTACAAGTACTTATGATCTTGTAGAGAGAATGTATTTCCTTTATGTTCGTGTCGTCAAA 1072
Query 1062 GCTCGTGAGCTTCCTATAATGGATATAACAGGAAGTGTTGATCCATTCGTCGAGGTGAGA 1121
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 1073 GCTCGTGAGCTTCCTATAATGGATATAACAGGAAGTGTTGATCCATTCGTGGAGGTTAAA 1132
Query 1122 GTGGGGAACTACAAAGGAATCACAAGACATTTTGAGAAGAGACAACATCCGGAATGGAAC 1181
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1133 GTGGGGAACTATAAAGGAATCACAAGACATTTTGAGAAGAGACAACATCCGGAGTGGAAC 1192
Query 1182 CAAGTGTTTGCATTCGCGAAAGAGCGAATGCAAGCCTCGGTGTTGGAAGTAGTGGTTAAG 1241
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 CAAGTGTTTGCATTTGCGAAAGAGCGAATGCAAGCCTCGGTGTTGGAAGTAGTGGTTAAG 1252
Query 1242 GACAAAGATCTTTTAAAAGACGATTATGTCGGGTTTGTTAGGTTTGACATTAATGATGTC 1301
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 GACAAAGATCTTTTGAAAGACGATTATGTCGGGTTTGTTAGGTTTGACATTAATGATGTC 1312
Query 1302 CCTCTTCGTGTGCCACCAGACAGCCCTCTTGCTCCGCAATGGTATAGATTAGAGGACAAG 1361
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1313 CCTCTTCGTGTGCCTCCGGACAGCCCTCTTGCTCCGCAATGGTATAGATTAGAAGACAAG 1372
Query 1362 AAAGGAGAGAAGATCAAAGGTGAGCTTATGCTTGCTGTTTGGATCGGTACACAAGCTGAT 1421
||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||
Sbjct 1373 AAAGGGGAGAAGATCAAAGGTGAGCTAATGCTCGCTGTTTGGATAGGTACACAAGCCGAT 1432
Query 1422 GAAGCTTTCTCTGATGCTTGGCATTCTGATGCTGCAATGCCCGTTGATTGTTCTCCAGCT 1481
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1433 GAAGCTTTCTCTGATGCTTGGCATTCTGATGCTGCAATGCCTGTTGATTGTTCTCCAGCT 1492
Query 1482 ATCTCCGCCGTTCTCCGCTCAAAGGTCTATCATGCGCCTCGTCTATGGTACGTCCGTGTG 1541
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1493 ATCTCCGCCGTTCTTCGCTCAAAGGTCTATCATGCGCCTCGTCTATGGTACGTGCGTGTG 1552
Query 1542 AACGTGATCGAAGCACAAGACTTGATTCCGACAGACAAAACTAGGTTCCCTGATGTTTAC 1601
|| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1553 AATGTGATCGAAGCACAAGACTCAATTCCAACAGACAAAACTAGGTTCCCTGATGTTTAC 1612
Query 1602 GTCAAGGCGCAGCTAGGAAACCAAGTCATGAAGACCAGACCATGCCAAGCTCGAACCCTT 1661
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1613 GTCAAAGCGCAGCTAGGAAACCAAGTCATGAAGACCAGACCGTGCCAAGCTCGAACCCTT 1672
Query 1662 GGTGCCGTATGGAACGAAGACTTTTTGTTTGTTGTTGCGGAGCCATTTGAAGACCATTTA 1721
|| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1673 GGCGCAGTATGGAACGAAGACTTTTTATTTGTTGTTGCAGAGCCATTTGAAGACCATTTG 1732
Query 1722 GTTCTCACCGTCGAGGACCGGGTTGCTCCAGGAAAGGACGAGATAGTTGGTCGTACTTAC 1781
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1733 GTTCTCACCGTCGAGGACCGGGTTGCTCCAGGAAAGGACGAGATAGTTGGCCGTACTTAC 1792
Query 1782 ATTCCTTTGAACACGGTAGAGAAGCGAGCTGATGATCATATGATACATGCGCGATGGTAT 1841
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1793 ATTCCTTTGAACACGGTAGAGAAGCGAGCTGATGACCATATGATACATGCGCGATGGTAT 1852
Query 1842 AATCTGGAGAGACCGGTTATTGTAGATGTGGATCAGCTCAAGAGAGAAAAATTCTCTATG 1901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1853 AATCTGGAGAGACCGGTTATTGTAGATGTGGATCAGCTCAAGAGAGAAAAATTCTCTATG 1912
Query 1902 AGGATTCATCTGCGAGTTTGTCTTGAAGGAGGATACCATGTTTTGGATGAGTCAACTCAT 1961
||||||||||| |||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 1913 AGGATTCATCTCCGAGTTTGTCTTGAAGGAGGCTACCATGTTTTGGATGAGTCGACACAC 1972
Query 1962 TACAGCAGCGATCTCCGCCCATCCGCTAGACCACTCTGGAGACAACCGATCGGAGTTCTT 2021
|| ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 1973 TATAGCAGCGATCTCCGCCCATCCGCGAGACCGCTCTGGAGACAACCGATTGGAGTTCTT 2032
Query 2022 GAGCTCGGGATCTTAAACGCTGTTGGACTTCACCCAATGAAAACTAGAGAAGGCAGAGGA 2081
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2033 GAACTCGGGATCTTAAACGCTGTTGGACTACACCCAATGAAAACTAGAGAAGGCAGAGGA 2092
Query 2082 ACCTCTGACACTTTTTGCGTTGGGAAATATGGACAAAAGTGGGTTAGAACAAGGACAATG 2141
||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 2093 ACCTCTGACACTTTTTGTGTTGGAAAATATGGCCAAAAGTGGGTTAGAACGAGGACAATG 2152
Query 2142 GTGGATAACTTGTGTCCCAAGTATAACGAGCAGTATACATGGGAAGTCTTTGACCCAGCG 2201
|||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||
Sbjct 2153 GTGGATAACTTGTGTCCCAAGTATAACGAGCAGTATACGTGGGAAGTATTCGATCCAGCG 2212
Query 2202 ACGGTTTTAACCGTTGGTGTGTTTGATAACGGACAGCTAGGTGAAAAAGGAAATAGAGAT 2261
|| |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 2213 ACAGTTTTAACCGTTGGTGTGTTTGATAATGGACAGCTTGGAGAAAAAGGAAATAGAGAT 2272
Query 2262 GTGAAGATTGGGAAGATTCGTATAAGGTTATCTACTTTAGAGACTGGACGGATCTACACA 2321
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 2273 GTGAAGATTGGGAAGATTCGCATAAGGTTGTCTACTTTAGAGACTGGACGGATCTACACA 2332
Query 2322 CATTCTTACCCGCTACTTGTTCTTCACCCTACTGGGGTGAAGAAAATGGGCGAGCTACAT 2381
|||||||| ||||| || |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 2333 CATTCTTATCCGCTCCTCGTTCTTCACCCTACCGGGGTGAAGAAAATGGGCGAGCTGCAT 2392
Query 2382 ATGGCCGTGAGGTTCACATGCATCTCGTTCGCAAACATGCTTTACCAATACTCAAAACCA 2441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2393 ATGGCCGTGAGGTTCACATGCATCTCGTTCGCAAACATGCTTTACCAATACTCAAAACCA 2452
Query 2442 CTTTTGCCTAAAATGCATTATGTTAGACCGTTTTCAGTAATGCAGCAGGACATGCTTCGA 2501
|||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 2453 CTTTTGCCTAAAATGCATTACGTAAGACCGTTTTCAGTTATGCAGCAGGACATGCTTCGG 2512
Query 2502 CATCAAGCGGTGAATATAGTGGCTGCGCGGTTAGGTAGAGCAGAGCCTCCCCTGA-GGAA 2560
|| ||||| ||||||||||||||||| ||| |||||||||||||||||||||| | ||||
Sbjct 2513 CACCAAGCTGTGAATATAGTGGCTGCACGGCTAGGTAGAGCAGAGCCTCCCCT-ACGGAA 2571
Query 2561 AGAGATCATTGAGTTTATGTCGGACACGGATTCGCATTTGTGGAGTATGCGTAAGAGCAA 2620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2572 AGAGATCATTGAGTTTATGTCGGACACGGATTCGCATTTGTGGAGTATGCGTAAGAGCAA 2631
Query 2621 AGCTAATTTCTTCCGGATGATGACAGTTTTCTCCGGTGTTATCGCGGTTGGAAAATGGTT 2680
|||||||||||||||||||||||| |||||||| || |||||||||||||| ||||||||
Sbjct 2632 AGCTAATTTCTTCCGGATGATGACGGTTTTCTCTGGAGTTATCGCGGTTGGGAAATGGTT 2691
Query 2681 CTCGGACATTTGCTCGTGGCGAAACCCGATCACGACCGTTCTTGTTCATGTTCTGTTTTT 2740
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2692 CTCGGACATTTGCTCGTGGAGAAACCCGATCACGACCGTTCTTGTTCATGTTCTGTTTCT 2751
Query 2741 GATGCTTGTTTGTCTCCCAGAACTGATCTTACCAACAATGTTTCTCTACATGTTTTTGAT 2800
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 2752 GATGCTTGTTTGTCTCCCGGAACTGATCTTACCAACCATGTTTCTCTACATGTTTTTGAT 2811
Query 2801 CGGGCTCTGGAACTACCGGTTTAGACCACGTTATCCACCACACATGAACACAAAAATCTC 2860
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 2812 CGGGCTCTGGAACTACCGATTTAGACCACGTTATCCGCCACACATGAACACAAAAATCTC 2871
Query 2861 TCAAGCCGAGGCGGTCCATCCAGACGAGCTTGATGAAGAGTTTGATACGTTTCCAACCAC 2920
|||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 2872 TCAAGCAGAGGCGGTCCATCCAGACGAGCTTGACGAAGAGTTTGACACGTTTCCAACCAC 2931
Query 2921 TAGAAACCCTGACATGGTGCGTTTAAGGTATGACCGGCTTAGAAGCGTGGCCGGGAGGAT 2980
|||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 2932 AAGAAACCCTGACATGGTGCGGTTAAGGTACGACCGGCTAAGAAGCGTGGCCGGGAGGAT 2991
Query 2981 TCAGACCGTGATCGGAGATCTTGCAACACAAGGAGAACGTTTTCAAGCACTTTTAAGCTG 3040
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2992 TCAGACCGTGATTGGAGATCTTGCAACACAAGGAGAACGTTTTCAAGCACTTTTAAGCTG 3051
Query 3041 GAGAGATCCACGCGCTACCGCGATATTTGTTATATTGTGCTTTATTGCGGCCATAGTTTT 3100
||||||||||||||| |||||||||||||||||||| |||||| |||| ||||| |||||
Sbjct 3052 GAGAGATCCACGCGCGACCGCGATATTTGTTATATTCTGCTTTCTTGCAGCCATTGTTTT 3111
Query 3101 CTTCATAACACCGATTCAGATTGTTGTAGCATTGGCTGGATTCTTCACGATGAGGCATCC 3160
|||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 3112 CTTCATAACACCAATTCAGATTGTTGTAGCGTTGGCTGGTTTCTTCACGATGAGGCATCC 3171
Query 3161 GAGGTTCCGACATCGGCTTCCTTCTGTTCCAGTTAACTTCTTTCGCCGGTTGCCTGCTCG 3220
|||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 3172 GAGGTTCCGACACCGGCTTCCTTCTGTTCCGGTTAACTTCTTCCGCCGGTTACCTGCTCG 3231
Query 3221 AACGGATAGTATGCTCTAGCTT 3242
||||||||||||||| ||||||
Sbjct 3232 AACGGATAGTATGCTTTAGCTT 3253
Score = 143 bits (77), Expect = 9e-33
Identities = 97/106 (92%), Gaps = 3/106 (3%)
Strand=Plus/Plus
Query 3358 ATGGTATTCATTAGTGTTTCCTTTTCAAAA-ATACCTCTAAGAAAA-TCAGAGAAAGGAT 3415
|||||||||||||||||||||||||||| | ||| ||||| ||||| |||||||||||||
Sbjct 3273 ATGGTATTCATTAGTGTTTCCTTTTCAAGATATAGCTCTA-GAAAAATCAGAGAAAGGAT 3331
Query 3416 CAGTGAGTCCAAAATTCCCAATTTGGTATAAACTAGAAATGAAATT 3461
|||||||||||| ||||| |||||||||||||||||| | ||||||
Sbjct 3332 CAGTGAGTCCAAGATTCCTAATTTGGTATAAACTAGACACGAAATT 3377
> Ahg488114 jgi|Araly1|488114|fgenesh2_kg.6__1248__AT5G12970.1
Length=2535
Score = 285 bits (154), Expect = 1e-75
Identities = 1427/2015 (71%), Gaps = 193/2015 (10%)
Strand=Plus/Plus
Query 1100 TGATCCAT-TCGTCGAGGTGAGAG-TGGGGAACTACAAAGGAATCAC-AAGACATTTTGA 1156
|||||||| | || || |||| || | || ||||||| ||| || || ||| ||||||||
Sbjct 405 TGATCCATAT-GTGGAAGTGA-AGCTCGGAAACTACAGAGGGATGACTAAG-CATTTTGA 461
Query 1157 GAAG-AGACAACATCCGGAATGGAACCAAGTGTTTGCATTCGCGAAA-GAGCGAATGCAA 1214
|||| || | | ||||||| ||||| ||||||||||| || | ||| ||| |||| |||
Sbjct 462 GAAGAAGTCGA-ATCCGGAGTGGAAGCAAGTGTTTGCGTTTTC-AAAGGAGAGAATCCAA 519
Query 1215 GCCTCGGTGTTGGAAGTAGTGGTTAAGGACAAAGATCTTTTAAAAGACGA-TT-ATGTCG 1272
|| || | ||||| || || ||||| ||||||||| | | || || || || |
Sbjct 520 GCATCAATCTTGGAGGTTGTAGTTAAAGACAAAGATGTGGTGTTGGATGATTTAAT-T-- 576
Query 1273 GGTTTG--TTAGGTTTGA-CATTAATGATG-TCCCTCTTCGTGTGCCACCAGACAG-CCC 1327
|| | | | | |||||| | ||||||| | | ||| || || || || || || ||
Sbjct 577 GG-TAGAATCATGTTTGATC-TTAATGA-GATTCCTAAGCGAGTTCCGCCTGATAGTCCA 633
Query 1328 TCTTGCTCCGCAATGGTATAGATTAGAGGA-CAAGAAAGGAG-AGAAGATCAAAGGTGAG 1385
| | ||||| || |||||||| |||||||| | | | || | | ||| | ||||| |||
Sbjct 634 T-TGGCTCCTCAGTGGTATAGGTTAGAGGATCGACATGGGCGTA-AAG-TTAAAGGAGAG 690
Query 1386 CTTATGCTT-GCTGTTTGGATCGGTACACAAGCTGATGAAGCTTTCTCTGATGCTTGGCA 1444
|||||| || ||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 691 CTTATG-TTAGCTGTTTGGATGGGGACACAAGCCGATGAAGCTTTCTCTGATGCTTGGCA 749
Query 1445 TTCTGATGCTGCAATGCCCGTTGATTGTTCTCCAGCTATCTCCGCCGTTCTCCGCTCAAA 1504
||| ||||| || | | |||| | || || | | | || | |||| |||||
Sbjct 750 TTCAGATGCAGCC-T-CG-GTTG---GACCTGAAGGTGTGAC-GCA-TA-TCCGTTCAAA 800
Query 1505 GGTCTATCATGCGCCTC-GTCTATGGTACGTCCGTGTGAACGTGATCGAAGCACAAGACT 1563
||| |||| | |||| | || ||||| || | || || || || || || ||||| |
Sbjct 801 GGTTTATCTTTCGCCAAAG-CTTTGGTATGTGAGGGTCAATGTAATTGAGGCTCAAGATT 859
Query 1564 TGATTCCGACA-GACAAAACTAGGTTCCCTGATGTTTACGTCAAGGCGCA-GCTAGGAAA 1621
|||| || || || ||||| | ||||||||| |||||||| || || | ||| |||||
Sbjct 860 TGATACCT-CATGATAAAACCAAGTTCCCTGAGGTTTACGTGAAAGCA-ATGCTCGGAAA 917
Query 1622 CCA-AGTCATGAAGACCA-G-ACCATGC-CA-AGCTCGAACCCTTGG-TGCCG-TATGGA 1674
||| | || ||| || || | | | | || | | | || | ||| | ||| | ||||
Sbjct 918 CCAGACTC-TGA-GAACACGTATT-T-CTCAGA-C-CAAAACATTGAAT-CCGATGTGGA 970
Query 1675 ACGAAGA-CTTTTTGTTTGTTGTTGCGGAGCCATTTGAAGA-CCATTTAGTTCTCACCGT 1732
| ||||| || | |||||||||||| ||||| ||||| || ||||| | ||||| | ||
Sbjct 971 ATGAAGATCTGAT-GTTTGTTGTTGCTGAGCCTTTTGAGGAGCCATTGA-TTCTCGCGGT 1028
Query 1733 CGAGGACCGGGTTGCTCC-AGGAAAGGACGAGATAGTT-GGTC-G-TACTTACATTCCT- 1787
|| || ||||||| || | |||| | || | ||| || | | | | || |||
Sbjct 1029 GGAAGATAGGGTTGCACCGAACAAAG-ATGAAAC-GTTAGG-CAGGTG-TG-CAATCCCG 1083
Query 1788 TTGAACACGGTAGAGAAGCGAGCTGATGATCATATGATACATG-CGCGA--TGGTAT-AA 1843
||| | | || | ||| || | | || |||| | | | | ||| |||| | ||
Sbjct 1084 TTGCAGAATGTCCA-AAGA-AGGTTA-GACCATAGGCCGCTTAACTCGAGGTGGT-TCAA 1139
Query 1844 TCTGGAGAGACCGGTTATTGTAGATGTGGATCAGCTCAAGAGAGAA-AAATTCTCTATG- 1901
||||||| || |||| || || | | | || || ||||| |||||| | | |
Sbjct 1140 CCTGGAGAAACATATTATGGTGGAAG-G-AG-AGAAAAA-AGAGATCAAATTCGCAA-GC 1194
Query 1902 AGGATTCATCTGCGAGT-TTGTCTTGAAGGAGGATACCATGTT-TTGGATGAGTCAACTC 1959
||||||||||| || | || ||||||||| |||||||||||| ||| |||| |||||||
Sbjct 1195 AGGATTCATCTAAGAATCTT-TCTTGAAGGTGGATACCATGTTCTTG-ATGAATCAACTC 1252
Query 1960 ATTACAGCAGCGATCTCCGCCCATCCGCTAGACCA-CTCTGGAGAC-AACCGATCGGAGT 2017
| ||||||||||| || | ||| |||| | || | || |||| || || | |||||| |
Sbjct 1253 ACTACAGCAGCGACCTAAGGCCAACCGCAAAAC-AGCTATGGAAACCAAGC-ATCGGACT 1310
Query 2018 TCTTGA-GCTCGGGATCTTAAACGCTGTT-GGACTTCAC-CCAATGAAAACTAGAGAAGG 2074
||||| | | |||||| ||| || | ||||| | |||||||| || | ||| ||
Sbjct 1311 GCTTGAAG-TAGGGATCATAAGTGC-GCACGGACTG-ATGCCAATGAAGACAAAAGATGG 1367
Query 2075 CA-GAGGAACCTCTGACACTTTTTGCGTTGGGAAA-TATGGACA-AAAGTGGGTTAGAAC 2131
| | ||| | | || | | ||| || || || ||||| || ||| ||| | |||||
Sbjct 1368 GAAGGGGA-CAACAGATGCATATTGTGT-GGCTAAGTATGGGCAGAAA-TGGATCAGAAC 1424
Query 2132 AAGGACAATGGTGGATAACTTGTGTC-CC-AAGTATAACGAGCAGTATACATGGGAAGTC 2189
||| ||||| || |||| || | | || || | ||||||||||| |||||||||||
Sbjct 1425 AAGAACAATTGTCGATAGTTT-TA-CGCCTAAATGGAACGAGCAGTACACATGGGAAGTG 1482
Query 2190 TTTGAC-CCAGCGACGGTTTTAACCGTTGGTGTGTTTGATAACGGACAGC-T---AGGTG 2244
||||| || || || || |||| |||| | || || |||||||| | | ||| |
Sbjct 1483 TTTGATACCTGC-ACTGTCATAACTTTTGGAGCATTCGACAACGGACA-CATTCCAGGAG 1540
Query 2245 AAAAAGGAAATAGAGATGTGAAGATT-GGGAAGATTC-GTATAAGGT-TATCTACT-TTA 2300
|| ||||| ||| | ||| || | ||||| | | | || | | | || || ||
Sbjct 1541 GAAGCGGAAA-AGAT-T-TGA-GAATCGGGAA-AGTGAGAATCCG-TCTCTCGACCCTT- 1593
Query 2301 GA-GACTGGACGG-ATCTACACACATTCTTACCCGCTACTTGTTCTT-CACCCTACTGGG 2357
|| | ||| || | |||||||||||||| || ||||| || || ||| || ||| | |||
Sbjct 1594 GAAG-CTG-ACCGTATCTACACACATTCATATCCGCTGCTCGT-CTTTCATCCTTCCGGG 1650
Query 2358 GTGAAGAAAATGGGCGAGCTACATATG-GCCGTGAGGTTCACATGC--ATCTCGTTCG-C 2413
| ||||| | || || |||| || |||||| ||||||| ||| ||||| | | |
Sbjct 1651 ATCAAGAAGACAGGTGAAATACA-ATTAGCCGTGCGGTTCACTTGCCTATCTC-T-CATC 1707
Query 2414 AAACATGCTT--TACCAATACTCAAAACCACTTT-TGCCTAAAATGCATTATGTTAGACC 2470
|| ||||||| || || |||| ||| || | || ||||||||||| | |||
Sbjct 1708 AA-CATGCTTCATATGTATTCTCAG--CCA-TTACTACCCAAAATGCATTACATCC-ACC 1762
Query 2471 -GTTTTCAGTAATGCAGCAGGACATGCTT-CGACATCAAGCGGTGAATATAGTGGCTGCG 2528
||| || || | |||| ||||| || | ||||| || ||| |||| || || | |||
Sbjct 1763 CGTTATCGGTTCTCCAGCTGGACA-GCCTGCGACACCAGGCGATGAACATTGTCTCGGCG 1821
Query 2529 CGGTT-AGGTAGAGCAGAGCCTCCCCTGAGGAAAGAGATCATTGAGTTTATG-TCGGACA 2586
|| | | | |||||||| || || | |||||||| | |||| ||| ||| |
Sbjct 1822 AGGCTGAACC-GCGCAGAGCCACCTCTTCGCAAAGAGATTGTAGAGTACATGCTCG-ATG 1879
Query 2587 CGGATTCGCATTTGTGGAGTATGCGTAAGAGCAAAGCTAATTTCTTCCGGATGATGACAG 2646
|| || ||| ||||||| ||| | | ||| |||||||| |||||| | || |||| |
Sbjct 1880 TTGACTCCCATATGTGGAGCATGAGGAGGAGTAAAGCTAACTTCTTCAGAATCATGA-A- 1937
Query 2647 TTTTCTCCGGTG-T-T-ATCGCGGTTGGAAAATGGTTCTCGGA-CAT-T-TGCT-CGTGG 2699
| |||| | || | | || || |||||||||||||| | | | || | ||| | |||
Sbjct 1938 TGTTCTGAG-TGGTCTCATTGCTGTTGGAAAATGGTT-T-G-ATCAGATCTGCAAC-TGG 1992
Query 2700 CGAAACCCGATCACGACCGTTCTTGTTCATGTTCTGTTT--TTGATGCTT-GTTTGTCT- 2755
||||||| || || || |||| |||||||||| ||| || || ||| ||| |||
Sbjct 1993 AGAAACCCAATAACCACAATTCTCATTCATGTTCT-TTTCATT-AT-CTTAGTTC-TCTA 2048
Query 2756 CCCAGAACTGATCTTACCAACAATGTTTCTC-TACATGTTT-TTGATCGGGCTCTGGAAC 2813
||| ||||| ||| | ||||| | ||||| ||| | ||| ||||||||| |||||||
Sbjct 2049 CCCGGAACTCATCCTCCCAACGGT-TTTCTTGTACCT-TTTCTTGATCGGGATCTGGAAT 2106
Query 2814 TACCGGTTTAGACCACGTTATCCACCACACATGAACACAAAAATCTCTCAAGCCGAGGCG 2873
| ||||| |||||| | | || ||||||||| |||||| | || || || || ||
Sbjct 2107 TTCCGGTGGAGACCAAGGCACCCGCCACACATGGACACAAGGTTGTCCCACGCAGACGCT 2166
Query 2874 GTCCATCCAGACGAGCTTGATGAAGAGTTTGATACGTTTCC-AACCACTAGAAACC-CTG 2931
||||| || || ||||||||||||||||||||||| ||||| ||| | || || |||
Sbjct 2167 GTCCACCCCGATGAGCTTGATGAAGAGTTTGATAC-TTTCCCAACTTCCCGAT-CCTCTG 2224
Query 2932 ACATGGTGCGTTTAAGGTATGACCGGCTTAGAAGCGT-GGCCGGGA-GGATTCAGACCGT 2989
| || ||| | | | ||||||||||| |||||| | || |||| || ||||||||||
Sbjct 2225 AGATTGTGAGGATGCGATATGACCGGCTCAGAAGCATAGG--GGGACGGGTTCAGACCGT 2282
Query 2990 GATCGGAGATCTTGCAACACAAGGAGAACG-TTTT 3023
||| || ||||| || ||||| ||||| || ||||
Sbjct 2283 GATAGGCGATCTAGCGACACAGGGAGAGCGGTTTT 2317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130879993547
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5