BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11640.1
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489984 jgi|Araly1|489984|fgenesh2_kg.6__3118__AT4G11640.1 1533 0.0
> Ahg489984 jgi|Araly1|489984|fgenesh2_kg.6__3118__AT4G11640.1
Length=1054
Score = 1533 bits (830), Expect = 0.0
Identities = 980/1053 (93%), Gaps = 8/1053 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGCAAATAGAGAGAAGTATGCTGCTGATATAT-TGTCCATAAAAGAAGCTCATGA 59
||||||||||||||||||||||||||||||||||||| | ||||| || |||||||||||
Sbjct 1 ATGGAAGCAAATAGAGAGAAGTATGCTGCTGATATATCT-TCCATTAAGGAAGCTCATGA 59
Query 60 CCGTATTAAGCCGTATATACATAGAACTCCGGTGTTAACATCTGAATCGTTGAATTCAAT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 60 GCGTATTAAGCCGTATATACATAGAACTCCGGTGTTAACATCTGAATCGTTGAATTTAAT 119
Query 120 CTCCGGAAGAAGCTTGTTCTTTAAGTGTGAGTGCCTTCAGAAAGGTGGAGCTTTCAAATT 179
||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 120 CTCTGGAAGAAGTTTGTTCTTTAAGTGTGAGTGCTTTCAGAAAGGTGGAGCTTTCAAATT 179
Query 180 CCGTGGAGCTTGCAATGCTGTTTTGTCTCTTGATGCTGAACAAGCAGCCAAAGGAGTTGT 239
||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 180 CCGTGGAGCGTGCAACGCTGTTTTGTCGCTTGATGCTGAACAAGCAGCCAAAGGTGTTGT 239
Query 240 AACACACAGCAGTGGAAACCATGCTGCTGCATTGTCTTTGGCTGCAAAGATTCAGGGAAT 299
||||||||||||||| || ||||| ||||| ||| |||||||||| ||| ||||||||||
Sbjct 240 AACACACAGCAGTGGTAATCATGCCGCTGCGTTGGCTTTGGCTGCGAAGCTTCAGGGAAT 299
Query 300 ACCGGCATATATTGTTGTACCAAAAGGTGCTCCAAAGTGCAAAGTTGATAATGTGATCAG 359
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 300 CCCGGCATATATTGTTGTACCGAAAGGTGCTCCAAAGTGCAAAGTTGATAATGTGATCCG 359
Query 360 GTATGGTGGTAAGGTTATATGGAGTGAAGCAACAATGTCTTCTAGAGAGGA-AATAGCTT 418
|||||||||| ||||||||||||||||| ||||||||||||||||||| || | ||||||
Sbjct 360 GTATGGTGGTGAGGTTATATGGAGTGAATCAACAATGTCTTCTAGAGA-GACAGTAGCTT 418
Query 419 CAAAAGTTTTGCAGGAAACAGGTTCAGTTCTGATCCATCCATATAATGATGGACGCATTA 478
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 419 CAAAAGTTTTGCAGGAAACAGGTTCAGTTCTGATCCACCCTTATAATGATGGACGCATTA 478
Query 479 TAAGTGGTCAGGGTACAATTGCATTGGAACTGCTGGAGCAAATCCAAGAGATTGATGCTA 538
|||| ||||||||||||||| ||||||||||||| ||||| |||||||||||||| ||||
Sbjct 479 TAAGCGGTCAGGGTACAATTTCATTGGAACTGCTCGAGCAGATCCAAGAGATTGACGCTA 538
Query 539 TAGTTGTGCCGATAAGCGGGGGTGGTTTGATATCTGGTGTGGCGCTTGCTGCCAAATCTA 598
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 539 TAGTTGTGCCGATAAGCGGGGGTGGTTTGATATCTGGTGTGGCTCTTGCTGCCAAAGCAA 598
Query 599 TTAAGCCTAGTATCCGGATTATAGCCGCTGAACCAAAAGGAGCTGATGATGCGGCTCAGT 658
|||||||||| || ||||||||||||||||||||||| ||||| ||||||| |||| |||
Sbjct 599 TTAAGCCTAGCATTCGGATTATAGCCGCTGAACCAAAGGGAGCCGATGATGTGGCTAAGT 658
Query 659 CTAAGGTCGCTGGTAAAATCATCACTTTACCTGTGACTAATACTATAGCTGATGGCCTTC 718
||||| | || |||||||||||||||||||||||||| ||||| || || ||||||||||
Sbjct 659 CTAAGATTGCGGGTAAAATCATCACTTTACCTGTGACCAATACGATTGCGGATGGCCTTC 718
Query 719 GAGCTTCTCTTGGAGATTTAACCTGGCCGGTGGTGAGGGACT-TGGTAGATGATGTTG-T 776
||||||||||||||||||||||||||||||| |||| || | | ||||| |||| || |
Sbjct 719 GAGCTTCTCTTGGAGATTTAACCTGGCCGGTTTTGAGAGA-TCTAGTAGACGATG-TGAT 776
Query 777 CACCTTGGAAGAGTGTGAAATAATCGAAGCCATGAAAATGTGCTATGAGATACTGAAGGT 836
||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 777 AACCTTGGAAGATTGCGAAATAATCGAAGCCATGAGAATGTGCTATGAGATACTGAAGGT 836
Query 837 CTCTGTGGAACCAAGTGGAGCTATTGGCCTTGCAGCAGTTTTATCAAACAGTTTCCGCAA 896
|||||||||||||||||| |||||||| || |||||||| ||||||||||||||||| ||
Sbjct 837 CTCTGTGGAACCAAGTGGGGCTATTGGTCTAGCAGCAGTATTATCAAACAGTTTCCGTAA 896
Query 897 CAATCCTTCTTGTCGTGATTGCAAAAACATAGGAATTGTACTCTCAGGAGGTAATGTTGA 956
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CAATCCTTCTTGGCGTGATTGCAAAAACATAGGAATTGTACTCTCAGGAGGTAATGTTGA 956
Query 957 TTTGGGCTCTCTATGGGATTCATTTAAGAGTTCAAAATAAACACCTTTGCTTATTGCATT 1016
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 957 TTTGGGCTCTCTATGGGATTCATTTAAGAGTTCAAAGTAAACACCTTTGCTTATTGCATT 1016
Query 1017 TCTTTCACGACTTCCTTAGATATCAATGAGAAT 1049
| |||||| ||||||||||||||||||||||||
Sbjct 1017 TGTTTCACTACTTCCTTAGATATCAATGAGAAT 1049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39533464929
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5