BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11650.1
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489985 jgi|Araly1|489985|fgenesh2_kg.6__3119__AT4G11650.1 1170 0.0
Ahg943027 jgi|Araly1|943027|scaffold_603571.1 791 0.0
Ahg943024 jgi|Araly1|943024|scaffold_603568.1 451 4e-126
> Ahg489985 jgi|Araly1|489985|fgenesh2_kg.6__3119__AT4G11650.1
Length=801
Score = 1170 bits (633), Expect = 0.0
Identities = 747/803 (93%), Gaps = 4/803 (0%)
Strand=Plus/Plus
Query 1 ATCACACATACATAAAAGTAGTAGAACTAAAAAATGGCAAACC-TCTTGGTCTCTACTTT 59
|||||||||||| ||||| |||||||||||||||||||||||| || |||| ||| ||
Sbjct 1 ATCACACATACACAAAAGAAGTAGAACTAAAAAATGGCAAACCTTC-CAGTCTTTACGTT 59
Query 60 CATATTTTCCGCACTTTTGCTCATCTCCACCGCAACAGCCGCCACATTCGAAATCCTAAA 119
|||||| ||||||||||| |||||||||||||| |||||||| |||||||| ||||||||
Sbjct 60 CATATTCTCCGCACTTTTTCTCATCTCCACCGCGACAGCCGCTACATTCGACATCCTAAA 119
Query 120 CCAATGTAGTTACACCGTGTGGGCTGCCGCAAGCCCTGGAGGTGGCCGACGTCTAGATGC 179
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 CTGATGTAGTTACACCGTGTGGGCTGCCGCAAGCCCCGGAGGTGGCCGACGTCTAGATGC 179
Query 180 TGGCCAATCATGGAGGCTAGATGTCGCGGCGGGCACTAAAATGGCACGGATTTGGGGTAG 239
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct 180 CGGCCAGTCATGGAGGCTAGATGTCGCGGCCGGCACTAAAATGGCACGTATTTGGGGTCG 239
Query 240 GACCAATTGTAACTTTGACTCCTCAGGTCGTGGCCGATGCCAAACTGGTGACTGCAGTGG 299
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 240 GACCAACTGTAACTTTGACTCCTCGGGCCGTGGCCGATGCCAAACTGGTGACTGCAGTGG 299
Query 300 TGGACTCCAATGTACTGGCTGGGGACAGCCACCAAACACGTTGGCTGAGTACGCTTTGAA 359
|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TGGACTTCAATGTACTGGTTGGGGACAGCCACCAAACACGTTGGCTGAATACGCTTTGAA 359
Query 360 CCAATTCAACAACTTAGACTTCTACGATATCTCACTTGTCGATGGATTTAACATACCTAT 419
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 360 CCAATTCAACAACTTAGACTTCTACGACATCTCACTTGTCGATGGCTTTAACATTCCTAT 419
Query 420 GGAGTTTAGCCCAACTAGTTCGAACTGCCATCGGATACTATGTACCGCAGACATAAACGG 479
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||
Sbjct 420 GGAGTTTAGCCCAACTAGCTCGAACTGCCATCGGATATTATGTACCGCAGACATAAATGG 479
Query 480 ACAATGTCCAAACGTGTTGAGAGCCCCAGGTGGATGCAACAACCCGTGTACTGTATTTCA 539
||| ||||| ||||| ||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct 480 ACAGTGTCCGAACGTACTGAAAGCCCCAGGCGGATGCAACAACCCGTGTACGGTATTTCA 539
Query 540 GACGAACCAATACTGTTGTACGAACGGTCAGGGATCATGTAGCGATACTGAGTACTCAAG 599
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 GACGAACCAATACTGTTGTACGAACGGTCAGGGATCATGTAGCGACACTGAGTACTCAAG 599
Query 600 ATTCTTTAAGCAGAGATGCCCTGACGCTTACAGCTATCCACAAGATGACCCGACTAGCAC 659
|||||| || |||||||| |||||||| ||||||||||||||||| |||||||| |||||
Sbjct 600 ATTCTTCAAACAGAGATGTCCTGACGCCTACAGCTATCCACAAGACGACCCGACCAGCAC 659
Query 660 TTTCACTTGCACCAACACTAACTACAGGGTCGTGTTTTGTCCAAG-GTCTAGGCTCGGTG 718
|||||||||||||||||||||||||||||||||||||||||| || | ||||| ||| ||
Sbjct 660 TTTCACTTGCACCAACACTAACTACAGGGTCGTGTTTTGTCCTAGAG-CTAGGGTCGCTG 718
Query 719 CTACTGGATCCCACCAGCTCCCGATCAAGATGGTCACCGAGGAGAATTAATAGACTCGTA 778
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||
Sbjct 719 CTACTGGATCCCACCAGCTCCCGATCAAGATGGTCACAGAGGAGAATTATTAGACTGGTA 778
Query 779 TCTACTGTAtgtgtgtgtgtgtg 801
|||||||||| ||||||||||||
Sbjct 779 TCTACTGTATATGTGTGTGTGTG 801
> Ahg943027 jgi|Araly1|943027|scaffold_603571.1
Length=714
Score = 791 bits (428), Expect = 0.0
Identities = 613/703 (87%), Gaps = 10/703 (1%)
Strand=Plus/Plus
Query 25 AACTAAAAAATGGCAAACCTCTTGGTCTCTACTTTCATATTTTCC-GCACTTTTGCTCAT 83
||| |||||||||||||| ||| |||||| ||||| || ||| || |||| |||||
Sbjct 15 AAC-AAAAAATGGCAAACATCTCACACTCTACGTTCATGTTCTCCATCA-TTTTCCTCAT 72
Query 84 CTCCACCGCAACAGCCGCCACATTCGAAATCCTAAACCAATGTAGTTACACCGTGTGGGC 143
||| ||||| || || ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 73 CTCAACCGCGACGGCTGCCACATTCGACATCCTAAACCGATGTAGTTACACCGTGTGGGC 132
Query 144 TGCCGCAAGCCCTGGAGGTGGCCGACGTCTAGATGCTGGCCAATCATGGAGGCTAGATGT 203
|||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||||||| ||
Sbjct 133 TGCCGCAAGCCCCGGAGGTGGCCGGCGTCTTGATGCGGGCCAGTCATGGAGGCTAGACGT 192
Query 204 CGCGGCGGGCACTAAAATGGCACGGATTTGGGGTAGGACCAATTGTAACTTTGACTCCTC 263
||| || || |||||||||||||||||||||||| ||||||| |||||||||||| ||||
Sbjct 193 CGCAGCCGGTACTAAAATGGCACGGATTTGGGGTCGGACCAACTGTAACTTTGACCCCTC 252
Query 264 AGGTCGTGGCCGATGCCAAACTGGTGACTGCAGTGGTGGACTCCAATGTACTGGCTGGGG 323
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 253 GGGACGTGGCCGATGCCAAACTGGTGACTGCAGTGGTGGACTTCAATGTACTGGTTGGGG 312
Query 324 ACAGCCACCAAACACGTTGGCTGAGTACGCTTTGAACCAATTCAACAACTTAGACTTCTA 383
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 313 ACAGCCACCAAACACGTTGGCTGAGTATGCTTTGAACCAGTTCAACAACTTAGACTTCTA 372
Query 384 CGATATCTCACTTGTCGATGGATTTAACATACCTATGGAGTTTAGCCCAACTAGTTCGAA 443
||| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 373 CGACATCTCACTTGTCGATGGATTTAACATTCCTATGGAGTTTAGCCCAACAAGCTCGAA 432
Query 444 CTGCCATCGGATAC-TATGTACCGCAGACATAAACGGACAATGTCCAAACGTGTTGAGAG 502
|||||| ||||| | |||| | ||| |||||||| ||||| ||||| || | ||||| ||
Sbjct 433 CTGCCACCGGAT-CGTATGCAACGCGGACATAAATGGACAGTGTCCGAATGAGTTGAAAG 491
Query 503 CCCCAGGTGGATGCAACAACCCGTGTACTGTATTTCAGACGAACCAATACTGTTGTACGA 562
|||| ||||| |||||||||||||| || || ||| ||||||| | || ||||||||||
Sbjct 492 CCCCGGGTGGTTGCAACAACCCGTGCACGGTTTTTAAGACGAATGAGTATTGTTGTACGA 551
Query 563 ACGGTCAGGGATCATGTAGC-GATACTGAGTACTCAAGATTCTTTAAGCAGAGATG-CCC 620
|||| || || ||||||||| | |||| || |||||||||||| || ||||| || |||
Sbjct 552 ACGGGCAAGGTTCATGTAGCAGC-ACTGGGTTCTCAAGATTCTTCAAACAGAGGTGTCCC 610
Query 621 TGACGCTTACAGCTATCCACAAGATGACCCGACTAGCACTTTCACTTGCACCAACACTAA 680
||||| ||||||||||||||||| |||||||| |||||||||||||| | ||||||
Sbjct 611 -GACGCCTACAGCTATCCACAAGACGACCCGACCAGCACTTTCACTTGTAGTTCCACTAA 669
Query 681 CTACAGGGTCGTGTTTTGTCCA-AGGTCTAGGCTCGGTGCTAC 722
||||||||| ||||||||||| ||| ||| ||||| ||||||
Sbjct 670 CTACAGGGTGGTGTTTTGTCCTTAGGGCTAAGCTCGATGCTAC 712
> Ahg943024 jgi|Araly1|943024|scaffold_603568.1
Length=613
Score = 451 bits (244), Expect = 4e-126
Identities = 332/374 (89%), Gaps = 7/374 (2%)
Strand=Plus/Plus
Query 58 TTCATATTTTCCGCA-C-TTTTGCTCATCTCCACCGCAACAGCCGCCACATTCGAAATCC 115
|||||| |||| || | |||| |||||||||||||| || || ||||||||||| ||||
Sbjct 51 TTCATA--TTCCCCATCATTTTCCTCATCTCCACCGCGACGGCTGCCACATTCGATATCC 108
Query 116 TAAACCAATGTAGTTACACCGTGTGGGCTGCCGCAAGCCCTGGAGGTGGCCGACGTCTAG 175
| |||| |||||| |||||||||||||| ||||| ||||| ||||||||||| ||||||
Sbjct 109 TTAACCGATGTAGCTACACCGTGTGGGCCGCCGCTAGCCCCGGAGGTGGCCGTCGTCTAA 168
Query 176 ATGCTGGCCAATCATGGAGGCTAGATGTCGC-GGCGGGCACTAAAATGGCACGGATTTGG 234
|| | ||||| |||||||||||||||||||| | |||| || ||||||||||| ||||||
Sbjct 169 ATCCCGGCCAGTCATGGAGGCTAGATGTCGCTGCCGGG-ACAAAAATGGCACGTATTTGG 227
Query 235 GGTAGGACCAATTGTAACTTTGACTCCTCAGGTCGTGGCCGATGCCAAACTGGTGACTGC 294
||| ||||||| ||||||||||||||||| || |||||||||||| |||| |||||||||
Sbjct 228 GGTCGGACCAACTGTAACTTTGACTCCTCGGGCCGTGGCCGATGCGAAACCGGTGACTGC 287
Query 295 AGTGGTGGACTCCAATGTACTGGCTGGGGACAGCCACCAAACACGTTGGCTGAGTACGCT 354
||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 288 AGTGGTGGACTTCAATGTACTGGTTGGGGCCAGCCTCCAAACACGTTGGCTGAGTACGCT 347
Query 355 TTGAACCAATTCAACAACTTAGACTTCTACGATATCTCACTTGTCGATGGATTTAACATA 414
|||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 348 TTGAACCAATACAATAACTTAGACTTCTACGACATCTCACTTGTCGATGGATTTAACATT 407
Query 415 CCTATGGAGTTTAG 428
|| ||| |||||||
Sbjct 408 CCAATG-AGTTTAG 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38656637838
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5