BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11653.1
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931200 jgi|Araly1|931200|scaffold_303657.1 318 1e-86
> Ahg931200 jgi|Araly1|931200|scaffold_303657.1
Length=319
Score = 318 bits (172), Expect = 1e-86
Identities = 243/277 (88%), Gaps = 5/277 (2%)
Strand=Plus/Plus
Query 1 ATGATAAAAACAAAAGAAGTTACGTTTGTGACGATTTTGATTGTATTATGCGTGTTTATA 60
||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||
Sbjct 22 ATGATAAAAACAAAAGAGGTTACGTTTGTGACAATTTTGATTTTATTATGCGTGTTTATA 81
Query 61 AGTACCATTCATGCG---AAAAGATATATTGAGTATCCAATTAGATTAGATTTAGGTAAA 117
|| |||| ||||| |||| ||||||| | |||||||||||| ||||||||||||
Sbjct 82 TGTTGCATTGATGCGCAAAAAAAATATATTCACTATCCAATTAGAAGAGATTTAGGTAAT 141
Query 118 GGTTGTGATCCAAGATTTCCTACCGCTGCATGTTATAAGCGCACACCAGCAAATCCATAT 177
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct 142 GGTTGTGATCCAAGATTTCCTACCGCTGCATGTTATAAGCGCATACCAGCGAATCCGTAT 201
Query 178 AGGCGTCCATGTACTACTGCCAATAGATGTCGTCGTTCTACTTCTTCTACACGAGTACCA 237
| ||| ||||| || |||||||||||| || |||||||||| |||| ||||||| ||
Sbjct 202 ACGCGAGGATGTAGTATTGCCAATAGATGCCGCCGTTCTACTTTTTCTGTACGAGTATCA 261
Query 238 TCTTTGAAAAC-TTTTGTGGAAATACCACCAATGTAA 273
|||||||||| |||| ||||||||||||||||||||
Sbjct 262 TCTTTGAAAAAGTTTT-TGGAAATACCACCAATGTAA 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9500741661
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5