BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11655.1 Length=796 Score E Sequences producing significant alignments: (Bits) Value Ahg489986 jgi|Araly1|489986|fgenesh2_kg.6__3120__AT4G11655.1 965 0.0 > Ahg489986 jgi|Araly1|489986|fgenesh2_kg.6__3120__AT4G11655.1 Length=730 Score = 965 bits (522), Expect = 0.0 Identities = 625/674 (93%), Gaps = 9/674 (1%) Strand=Plus/Plus Query 2 TTTGATGAAAGAGCTTAAAGATCACGTTGTAGTGATCACTTATGGACCATCATCGGAGGC 61 |||||||||||||||||||||||||||||||||||| | |||||| | ||||||||| Sbjct 1 TTTGATGAAAGAGCTTAAAGATCACGTTGTAGTGATGGCCTATGGA-C--CATCGGAGGG 57 Query 62 TTCAGTAACGGCGTCACCTGTCTCTCAACAGACGCCGTCTTTGTTTGCATACTCCGTAAC 121 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 58 TTCAGTAACGGCGTCGCCTGTCTCTCAACAGACGCCGTCTTTGTTTGCATACTCTATAAC 117 Query 122 GCCGTCAGCATCAAGATTCAGCTCACGGCGAGCATCGGTTCATGTTATCGGTTTGGTTCT 181 ||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 118 GCCTTCAACATCAAGATTCAGCTCACGGCGAGCATCGGTTCATGTCATCGGTTTGGTTCT 177 Query 182 CCGGTTTATAACTATGGTTCTATGTTTCGTCTCTGCTCTTTCGTTGGCAGTGAATGTTCA 241 ||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 178 CCGGTTTTTAACTTTGGTTCTATGTTTTGTCTCTGCTCTTTCGTTAGCAGTGAATGTTCA 237 Query 242 -ACGGCCTTCGAAGAGACATCTGACACAAAACTCCTCGAGTTTTGCTTCATATCCTGAAC 300 | ||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 238 TA-GGCCTTCGAGGAGATATCTGACACAGAACTCCTCGAGTTTTGCTTCATATCCTGAAC 296 Query 301 TGTTGTATTGTTTTGGAGTTGCAGTGATAGGATTCGTGTATACAAGTTTGCAAACATTCA 360 | ||||||||||||| || |||||||||||||||||||||||| ||||||||||||||| Sbjct 297 TATTGTATTGTTTTGTTGTAGCAGTGATAGGATTCGTGTATACATGTTTGCAAACATTCA 356 Query 361 AAGGAGTTTGTGATATTACTCACAGAGGAGTTTTAATCTCTGAGCCTCTCTCGGATTACA 420 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | Sbjct 357 AAGGAGTTTGTGATATTACTCACAGAGGAATTTTAATCTCTGAGCCTCTTTCGGATTATA 416 Query 421 TCAGCTTCATATTTGACCAGGTTATATGTTACCTACTAGTGTCATCTTCTTCCGTGGCAA 480 ||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| Sbjct 417 TCAGCTTCATATTTGACCAGGCTATATGTTACCTACTAGTATCATCTTCTTCGGTGGCAA 476 Query 481 TTGCATGGATCCAACATATAAACGAGGATGCGATAAAAACACTAAGAAACAATTCTATAG 540 |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 477 TTGCGTGGATCCAACATATAAACGAGGATGCGATAAACACACTAAGAAATAATTCCATAA 536 Query 541 TTTCAGTTTCAATGTCATTCTCTGCATTT-TTGGTTTTGACACTCTCTGGCCTCTTGTCA 599 ||||||||||||||||||||||||| ||| || ||||||||||||||| ||||||||||| Sbjct 537 TTTCAGTTTCAATGTCATTCTCTGC-TTTCTTTGTTTTGACACTCTCTAGCCTCTTGTCA 595 Query 600 GGGTATAAGCTTTGCAAGAGATTTATGTGGTAATTAAATCTTGTAAtt--tttttATACT 657 || ||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 596 GGTTATAAGCTTTGCAAGAGATTTATGTGGTAATTAAATCTTGTAAAGGGTTTTTATATT 655 Query 658 CAAGTCATGTTTAA 671 || ||||||||||| Sbjct 656 CATGTCATGTTTAA 669 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29392769007 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5