BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G11655.1

Length=796
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489986 jgi|Araly1|489986|fgenesh2_kg.6__3120__AT4G11655.1         965    0.0  


> Ahg489986 jgi|Araly1|489986|fgenesh2_kg.6__3120__AT4G11655.1
Length=730

 Score =  965 bits (522),  Expect = 0.0
 Identities = 625/674 (93%), Gaps = 9/674 (1%)
 Strand=Plus/Plus

Query  2    TTTGATGAAAGAGCTTAAAGATCACGTTGTAGTGATCACTTATGGACCATCATCGGAGGC  61
            ||||||||||||||||||||||||||||||||||||  | |||||| |  ||||||||| 
Sbjct  1    TTTGATGAAAGAGCTTAAAGATCACGTTGTAGTGATGGCCTATGGA-C--CATCGGAGGG  57

Query  62   TTCAGTAACGGCGTCACCTGTCTCTCAACAGACGCCGTCTTTGTTTGCATACTCCGTAAC  121
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||
Sbjct  58   TTCAGTAACGGCGTCGCCTGTCTCTCAACAGACGCCGTCTTTGTTTGCATACTCTATAAC  117

Query  122  GCCGTCAGCATCAAGATTCAGCTCACGGCGAGCATCGGTTCATGTTATCGGTTTGGTTCT  181
            ||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  118  GCCTTCAACATCAAGATTCAGCTCACGGCGAGCATCGGTTCATGTCATCGGTTTGGTTCT  177

Query  182  CCGGTTTATAACTATGGTTCTATGTTTCGTCTCTGCTCTTTCGTTGGCAGTGAATGTTCA  241
            ||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct  178  CCGGTTTTTAACTTTGGTTCTATGTTTTGTCTCTGCTCTTTCGTTAGCAGTGAATGTTCA  237

Query  242  -ACGGCCTTCGAAGAGACATCTGACACAAAACTCCTCGAGTTTTGCTTCATATCCTGAAC  300
             | ||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct  238  TA-GGCCTTCGAGGAGATATCTGACACAGAACTCCTCGAGTTTTGCTTCATATCCTGAAC  296

Query  301  TGTTGTATTGTTTTGGAGTTGCAGTGATAGGATTCGTGTATACAAGTTTGCAAACATTCA  360
            | |||||||||||||  || |||||||||||||||||||||||| |||||||||||||||
Sbjct  297  TATTGTATTGTTTTGTTGTAGCAGTGATAGGATTCGTGTATACATGTTTGCAAACATTCA  356

Query  361  AAGGAGTTTGTGATATTACTCACAGAGGAGTTTTAATCTCTGAGCCTCTCTCGGATTACA  420
            ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
Sbjct  357  AAGGAGTTTGTGATATTACTCACAGAGGAATTTTAATCTCTGAGCCTCTTTCGGATTATA  416

Query  421  TCAGCTTCATATTTGACCAGGTTATATGTTACCTACTAGTGTCATCTTCTTCCGTGGCAA  480
            ||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct  417  TCAGCTTCATATTTGACCAGGCTATATGTTACCTACTAGTATCATCTTCTTCGGTGGCAA  476

Query  481  TTGCATGGATCCAACATATAAACGAGGATGCGATAAAAACACTAAGAAACAATTCTATAG  540
            |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| 
Sbjct  477  TTGCGTGGATCCAACATATAAACGAGGATGCGATAAACACACTAAGAAATAATTCCATAA  536

Query  541  TTTCAGTTTCAATGTCATTCTCTGCATTT-TTGGTTTTGACACTCTCTGGCCTCTTGTCA  599
            ||||||||||||||||||||||||| ||| || ||||||||||||||| |||||||||||
Sbjct  537  TTTCAGTTTCAATGTCATTCTCTGC-TTTCTTTGTTTTGACACTCTCTAGCCTCTTGTCA  595

Query  600  GGGTATAAGCTTTGCAAGAGATTTATGTGGTAATTAAATCTTGTAAtt--tttttATACT  657
            || |||||||||||||||||||||||||||||||||||||||||||    |||||||| |
Sbjct  596  GGTTATAAGCTTTGCAAGAGATTTATGTGGTAATTAAATCTTGTAAAGGGTTTTTATATT  655

Query  658  CAAGTCATGTTTAA  671
            || |||||||||||
Sbjct  656  CATGTCATGTTTAA  669



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29392769007


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5