BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11680.1 Length=1573 Score E Sequences producing significant alignments: (Bits) Value Ahg327304 jgi|Araly1|327304|fgenesh1_pm.C_scaffold_6002524 1622 0.0 > Ahg327304 jgi|Araly1|327304|fgenesh1_pm.C_scaffold_6002524 Length=1263 Score = 1622 bits (878), Expect = 0.0 Identities = 968/1010 (96%), Gaps = 11/1010 (1%) Strand=Plus/Plus Query 116 TCATCATCAACGACGACGAACACAACAACAGAATCAGATTCATCATCTCTACCTACTCAC 175 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7 TCATCATCACCGACGACGAACACAACAACAGAATCAGATTCATCATCTCTACCTACTCAC 66 Query 176 ATCGGTAGATCAAATTCCGACGGAATCATCGACACTACACCATTTCTTCCTCCCACCGTT 235 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 67 ATCGGCAGATCAAATTCCGACGGAATCATCGACACTACACCATTTCTTCCTCCCATCGTT 126 Query 236 ACAAGAACCATAAGCGTAGATGAAGAATCCAATCCAATTCATCGATCCGCTAGACGACAA 295 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 127 ACAAGAACCATAAGCGTAGATGAAGAATCCAATCCGATTCATCGATCCGCTAGACGACAA 186 Query 296 GGTCTAAGAGAAGCAGCGAGGTTCCTCCGTCACGCTGGTAGCCGGAGAATGATGCGTGAA 355 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 187 GGTCTAAGAGAAGCAGCGAGGTTCCTCCGTCACGCTGGTAGCCGGAGGATGATGCGTGAA 246 Query 356 CCATCGATGCTCGTTAGAGAAACCGCTGCTGAGCAATTAGAAGAGAGACAAAGTGATTGG 415 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 247 CCATCGATGCTCGTTAGAGAAACCGCTGCTGAGCAATTGGAAGAGAGACAAAGTGATTGG 306 Query 416 GCGTATTCTAAACCTGTGGTGTTTCTTGACATTTTGTGGAATCTTGCTTTTGTTGCCATC 475 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 307 GCGTATTCTAAACCTGTGGTGTTTCTTGACATTTTGTGGAATCTAGCTTTTGTTGCGATC 366 Query 476 GGTGTTGCTGTTCTGATACTTAGCCGTGACGAGAAGCCTAATATGCCGTTGAGAGTTTGG 535 |||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 367 GGTGTTGCTGTTTTGATTCTTAGCCGTGACGAGAAGCCTAATATGCCGCTGAGAGTTTGG 426 Query 536 GTTGTTGGTTATGGGATTCAATGTTGGTTACATATGGCTTGTGTTTGTGTTGAGTATAGG 595 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 427 GTTGTTGGTTATGGGATTCAGTGTTGGTTACATATGGCTTGTGTTTGTGTTGAGTATAGG 486 Query 596 CGGAGGAGACGACGACGTCACC---C---G--G-AGGATGGTGGTGGTTCTGGGTTGACG 646 |||||||||||||||||||||| | | | |||||||||||||| ||||||| ||| Sbjct 487 CGGAGGAGACGACGACGTCACCGATCTTCGTCGGAGGATGGTGGTGGTCCTGGGTTTACG 546 Query 647 AATTCTTCGTC-GCAGCAATATGTTTCGTTAGCGCAATTGGAGGATAGAGGAGAGACTAG 705 ||||| ||| | ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 547 AATTCGTCG-CAGCAGCAATATGTTTCGTTAGCGCAATTGGAGGACAGAGGAGAGACTAG 605 Query 706 TAATCCTGCGAAGCATCTTGAATCAGCCAATACGATGTTCTCATTCATCTGGTGGATAAT 765 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 606 TAATCCCGCGAAGCATCTAGAATCAGCCAATACGATGTTCTCATTCATCTGGTGGATAAT 665 Query 766 TGGATTCTACTGGGTTTCTGCAGGAGGCCAAACACTATCTAGTGACTCTCCTCAGCTCTA 825 ||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 666 TGGATTCTATTGGGTATCTGCAGGAGGCCAAACACTATCTGGTGACTCTCCTCAGCTCTA 725 Query 826 TTGGCTGTGTATCATTTTTCTCGGTTTCGAtgttttctttgttgtgttctgtgttgcatt 885 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 726 TTGGCTGTGTATCATTTTTCTCGGTTTCGATGTTTTCTTTGTTGTTTTCTGTGTTGCACT 785 Query 886 ggcttgtgttatcggccttgctgtttgctgttgtCTTCCATGTATAATTGCAATTCTATA 945 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 786 GGCTTGTGTTATCGGCCTTGCTGTTTGCTGTTGTCTTCCATGTATAATTGCAATACTATA 845 Query 946 TGCTGTTGCCGACCAGGAGGGAGCATCGAAGAACGACATAGATCAAATGCCGAAATTCAG 1005 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 846 TGCTGTTGCCGACCAGGAGGGAGCATCGAAGAACGACATAGATCAAATGCCGAAATTCAA 905 Query 1006 ATTTACAAAAACTGGCAATGTTGAAAAGCTCTCAGGCAAAGCACGGGGAATAATGACGGA 1065 |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| || Sbjct 906 ATTTACAAAAACTGGCAATGATGAAAAGCTCTCTGGCAAAGCACGGGGAATAATGACAGA 965 Query 1066 ATGTGGAACAGATTCACCTATTGAACGCTCGCTCTCTCCAGAAGACGCGG 1115 |||||||||||||||||||||||||||||| || ||||| |||||||||| Sbjct 966 ATGTGGAACAGATTCACCTATTGAACGCTCACTTTCTCCCGAAGACGCGG 1015 Score = 231 bits (125), Expect = 9e-60 Identities = 153/166 (92%), Gaps = 3/166 (2%) Strand=Plus/Plus Query 1114 GGAATGCTGCATCTGTCTCTGTGAATATGAAGATGGAGTTGAACTTAGAGAACTCCCTTG 1173 |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 1101 GGAATGCTGCATTTGTCTCTGTGAATATGAAGATGGAGTCGAACTAAGAGAACTCCCTTG 1160 Query 1174 TAACCATCACTTTCATTGCACTTGCATCGATAAATGGCTTCATATAAACTCACGTTGCCC 1233 ||||||||||||||||||| |||||||||||||||||||||| |||||||| || ||||| Sbjct 1161 TAACCATCACTTTCATTGCGCTTGCATCGATAAATGGCTTCACATAAACTCTCGATGCCC 1220 Query 1234 GCTCTGCAAGTTTAACATCTTGAAGAACGCAAACAACGAAGTCTAG 1279 || ||||||||||||||| |||||||||||||| ||||||||| Sbjct 1221 ACTTTGCAAGTTTAACATCCTGAAGAACGCAAAC---GAAGTCTAG 1263 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58925609015 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5