BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11680.1
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327304 jgi|Araly1|327304|fgenesh1_pm.C_scaffold_6002524 1622 0.0
> Ahg327304 jgi|Araly1|327304|fgenesh1_pm.C_scaffold_6002524
Length=1263
Score = 1622 bits (878), Expect = 0.0
Identities = 968/1010 (96%), Gaps = 11/1010 (1%)
Strand=Plus/Plus
Query 116 TCATCATCAACGACGACGAACACAACAACAGAATCAGATTCATCATCTCTACCTACTCAC 175
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 TCATCATCACCGACGACGAACACAACAACAGAATCAGATTCATCATCTCTACCTACTCAC 66
Query 176 ATCGGTAGATCAAATTCCGACGGAATCATCGACACTACACCATTTCTTCCTCCCACCGTT 235
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 67 ATCGGCAGATCAAATTCCGACGGAATCATCGACACTACACCATTTCTTCCTCCCATCGTT 126
Query 236 ACAAGAACCATAAGCGTAGATGAAGAATCCAATCCAATTCATCGATCCGCTAGACGACAA 295
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 127 ACAAGAACCATAAGCGTAGATGAAGAATCCAATCCGATTCATCGATCCGCTAGACGACAA 186
Query 296 GGTCTAAGAGAAGCAGCGAGGTTCCTCCGTCACGCTGGTAGCCGGAGAATGATGCGTGAA 355
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 187 GGTCTAAGAGAAGCAGCGAGGTTCCTCCGTCACGCTGGTAGCCGGAGGATGATGCGTGAA 246
Query 356 CCATCGATGCTCGTTAGAGAAACCGCTGCTGAGCAATTAGAAGAGAGACAAAGTGATTGG 415
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 247 CCATCGATGCTCGTTAGAGAAACCGCTGCTGAGCAATTGGAAGAGAGACAAAGTGATTGG 306
Query 416 GCGTATTCTAAACCTGTGGTGTTTCTTGACATTTTGTGGAATCTTGCTTTTGTTGCCATC 475
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 307 GCGTATTCTAAACCTGTGGTGTTTCTTGACATTTTGTGGAATCTAGCTTTTGTTGCGATC 366
Query 476 GGTGTTGCTGTTCTGATACTTAGCCGTGACGAGAAGCCTAATATGCCGTTGAGAGTTTGG 535
|||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 367 GGTGTTGCTGTTTTGATTCTTAGCCGTGACGAGAAGCCTAATATGCCGCTGAGAGTTTGG 426
Query 536 GTTGTTGGTTATGGGATTCAATGTTGGTTACATATGGCTTGTGTTTGTGTTGAGTATAGG 595
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 427 GTTGTTGGTTATGGGATTCAGTGTTGGTTACATATGGCTTGTGTTTGTGTTGAGTATAGG 486
Query 596 CGGAGGAGACGACGACGTCACC---C---G--G-AGGATGGTGGTGGTTCTGGGTTGACG 646
|||||||||||||||||||||| | | | |||||||||||||| ||||||| |||
Sbjct 487 CGGAGGAGACGACGACGTCACCGATCTTCGTCGGAGGATGGTGGTGGTCCTGGGTTTACG 546
Query 647 AATTCTTCGTC-GCAGCAATATGTTTCGTTAGCGCAATTGGAGGATAGAGGAGAGACTAG 705
||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 547 AATTCGTCG-CAGCAGCAATATGTTTCGTTAGCGCAATTGGAGGACAGAGGAGAGACTAG 605
Query 706 TAATCCTGCGAAGCATCTTGAATCAGCCAATACGATGTTCTCATTCATCTGGTGGATAAT 765
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 606 TAATCCCGCGAAGCATCTAGAATCAGCCAATACGATGTTCTCATTCATCTGGTGGATAAT 665
Query 766 TGGATTCTACTGGGTTTCTGCAGGAGGCCAAACACTATCTAGTGACTCTCCTCAGCTCTA 825
||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 666 TGGATTCTATTGGGTATCTGCAGGAGGCCAAACACTATCTGGTGACTCTCCTCAGCTCTA 725
Query 826 TTGGCTGTGTATCATTTTTCTCGGTTTCGAtgttttctttgttgtgttctgtgttgcatt 885
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 726 TTGGCTGTGTATCATTTTTCTCGGTTTCGATGTTTTCTTTGTTGTTTTCTGTGTTGCACT 785
Query 886 ggcttgtgttatcggccttgctgtttgctgttgtCTTCCATGTATAATTGCAATTCTATA 945
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 786 GGCTTGTGTTATCGGCCTTGCTGTTTGCTGTTGTCTTCCATGTATAATTGCAATACTATA 845
Query 946 TGCTGTTGCCGACCAGGAGGGAGCATCGAAGAACGACATAGATCAAATGCCGAAATTCAG 1005
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TGCTGTTGCCGACCAGGAGGGAGCATCGAAGAACGACATAGATCAAATGCCGAAATTCAA 905
Query 1006 ATTTACAAAAACTGGCAATGTTGAAAAGCTCTCAGGCAAAGCACGGGGAATAATGACGGA 1065
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||
Sbjct 906 ATTTACAAAAACTGGCAATGATGAAAAGCTCTCTGGCAAAGCACGGGGAATAATGACAGA 965
Query 1066 ATGTGGAACAGATTCACCTATTGAACGCTCGCTCTCTCCAGAAGACGCGG 1115
|||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 966 ATGTGGAACAGATTCACCTATTGAACGCTCACTTTCTCCCGAAGACGCGG 1015
Score = 231 bits (125), Expect = 9e-60
Identities = 153/166 (92%), Gaps = 3/166 (2%)
Strand=Plus/Plus
Query 1114 GGAATGCTGCATCTGTCTCTGTGAATATGAAGATGGAGTTGAACTTAGAGAACTCCCTTG 1173
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1101 GGAATGCTGCATTTGTCTCTGTGAATATGAAGATGGAGTCGAACTAAGAGAACTCCCTTG 1160
Query 1174 TAACCATCACTTTCATTGCACTTGCATCGATAAATGGCTTCATATAAACTCACGTTGCCC 1233
||||||||||||||||||| |||||||||||||||||||||| |||||||| || |||||
Sbjct 1161 TAACCATCACTTTCATTGCGCTTGCATCGATAAATGGCTTCACATAAACTCTCGATGCCC 1220
Query 1234 GCTCTGCAAGTTTAACATCTTGAAGAACGCAAACAACGAAGTCTAG 1279
|| ||||||||||||||| |||||||||||||| |||||||||
Sbjct 1221 ACTTTGCAAGTTTAACATCCTGAAGAACGCAAAC---GAAGTCTAG 1263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58925609015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5