BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11690.1
Length=1701
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352254 jgi|Araly1|352254|fgenesh1_pg.C_scaffold_6002847 2521 0.0
Ahg943036 jgi|Araly1|943036|scaffold_603580.1 2475 0.0
Ahg925928 jgi|Araly1|925928|scaffold_201489.1 2464 0.0
> Ahg352254 jgi|Araly1|352254|fgenesh1_pg.C_scaffold_6002847
Length=1755
Score = 2521 bits (1365), Expect = 0.0
Identities = 1585/1692 (94%), Gaps = 12/1692 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCAAAATCCCAGAAAACCCTCGTTCTGCTAGCGAATTTAATCAAGTTTCCTCCA 60
||||||||||||||||||||||||||| |||| ||||| ||| |||||||| ||||||||
Sbjct 1 ATGGCGGCAAAATCCCAGAAAACCCTCATTCTACTAGCAAATCTAATCAAGGTTCCTCCA 60
Query 61 TTAAAAGCTTTTTCTCTCTTAAATTCTCCAAATTTCCATGAATTTCAACACACACACGAA 120
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TTAAAAGCTTTCTCTCTCTTAAATTCTCCAAATTTCCATGGATTTCAACACACACACGAA 120
Query 121 TCAATCTCAATCCTTCTTCGTCTCCTTCTCTCTGGGAACTTATTCTCTCACGCTCAATCA 180
|| || ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 121 TCCATATCAATCCTTCTTCGTCTCCTTCTCTCTGGAAACTTATACTCTCACGCTCAATCA 180
Query 181 CTTCTTCTACAAGTAATCTCCGGAAAAATCCACTCCCAATTCTTCACATCTTCCTCTCTG 240
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CTTCTCCTTCAAGTAATCTCCGGAAAAATCCAATCCCAATTCTTCACATCTTCCTCTCTG 240
Query 241 TTACACTATTTGACAGAATCAGAAACGTCAAAAACAAAGTTTCGTCTCTACGAGGTAATC 300
|||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 241 CTACACTATTTGACAGAATCAGAAACGTCAAAAACCAAGTCTCGTCTCTACGAAGTAATC 300
Query 301 ATCAATTCCTATGTTCAATCTCAATCCCTAAACTT-ATCAATCTCTTACTTCAACGAAAT 359
|||||| ||||||||||||||||||||||| | || |||||||| |||||||||||||||
Sbjct 301 ATCAATGCCTATGTTCAATCTCAATCCCTAGA-TTCATCAATCTATTACTTCAACGAAAT 359
Query 360 GGTCGATAATGGTTTTGTTCCTGGATCGAATTGCTTCAACTATCTCTTAACTTTCGTTGT 419
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 GGTCGATAAGGGTTTTGTTCCTGGATCGAATTGCTTCAACAATCTCTTAACTTTCGTTGT 419
Query 420 TGGGTCATCTTCTTTCAATCAATGGTGGAGTTTCTTCAACGAGAACAAAAGCAAAGTTGT 479
|||||| ||||||||||||||||||||| ||||||||||||||| ||||| |||||||||
Sbjct 420 TGGGTCTTCTTCTTTCAATCAATGGTGGTGTTTCTTCAACGAGAGCAAAATCAAAGTTGT 479
Query 480 TTTGGACGTGTATAGCTTTGGGATTCTGATCAAAGGTTGTTGTGAAGCTGGTGAGATTGA 539
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480 TTTGGATGTGTATAGCTTTGGGATTGTGATCAAAGGTTGTTGTGAAGCTGGTGAGATTGA 539
Query 540 GAAAAGCTTTGATCTTCTTATTGAATTGACAGAGTTTGGGTTTTCTCCAAATGTAGTTAT 599
|||||| |||||||||||| ||||||| | ||||||||||||||||||||| || |||||
Sbjct 540 GAAAAGTTTTGATCTTCTTGTTGAATTAAGAGAGTTTGGGTTTTCTCCAAACGTTGTTAT 599
Query 600 CTACACTACTTTGATTGATGGGTGTTGCAAGAAAGGTGAGATTGAGAAGGCTAAAGATTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 CTACACTACTTTGATTGATGGGTGTTGCAAGAAAGGTGAGATTGAGAAGGCGAAAGATTT 659
Query 660 GTTTTTTGAGATGGGGAAACTT-GGATTAGTGGCTAATGAGCGTACTTACACGGTTTTGA 718
|||||||||||||||| || || |||||||||||||||||| | ||||||||||||||||
Sbjct 660 GTTTTTTGAGATGGGG-AAGTTCGGATTAGTGGCTAATGAGTGGACTTACACGGTTTTGA 718
Query 719 TTAATGGGTTATTCAAAAACGGGGTTAAGAAACAAGGGTTTGAGATGTATGAGAAGATGC 778
|| |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 719 TTCATGGGTTATTCAAAAATGGGATTAAGAAACAAGGGTTTGAGATGTACGAGAAGATGC 778
Query 779 AGGAAGATGGAGTTTTCCCTAATCTCTATACTTATAACTGTGTGATGAATCAGCTTTGTA 838
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 779 AGGAAGATGGTGTTTTCCCTAATCTCCATACTTATAACTGTGTGATGAATCAGCTTTGTA 838
Query 839 AAGATGGAAGAACAAAAGATGCATTCCAAGTGTTCGACGAAATGCGTGAGAGAGGGGTTT 898
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 839 AAGATGGAAGAACAAAAGATGCGTTTAAAGTGTTCGACGAAATGCGTGAGAGAGGGGTTT 898
Query 899 CTTGTAACATTGTCACTTATAATACTTTGATTGGTGGGTTATGTAGAGAGATGAAGTTGA 958
| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 899 CGTGTAATATTGTTACTTATAATACTTTGATTGGTGGGTTATGTAGAGAGATGAAGGCGA 958
Query 959 ATGAGGCAAATAAAGTTGTGGATCAAATGAAGAGTGATGGAATCAACCCGAATCTGATTA 1018
|||| |||||| | ||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct 959 ATGATGCAAATGAGGTTATGGATCAGATGAAGAGTGATGGAATCAATCCGAATCTGATTA 1018
Query 1019 CGTATAACACTTTGATTGATGGGTTTTGTGGTGTGGGAAAATTAGGGAAGGCGTTGAGTT 1078
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1019 CGTATAACACTTTGATTGATGGGTTTTGTGGTGTGAGAAAATTGGGGAAGGCGTTGAGTT 1078
Query 1079 TATGCAGAGATTTGAAGTCAAGAGGTCTGTCTCCGTCCCTCGTCACGTATAATATCCTAG 1138
||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 1079 TATGCAGAGATTTGAAGTCAAGAGGTCTGTCTCCGTCTCTTGTCACGTATAATATTCTAG 1138
Query 1139 TTTCCGGGTTCTGT-AGAAAAGGAGATACTTCAGGAGCAGCTAAGATGGTTAAGGAGATG 1197
|||||||||||||| || ||||| |||||||||||||||| |||| ||||||||||||||
Sbjct 1139 TTTCCGGGTTCTGTAAG-AAAGGGGATACTTCAGGAGCAGGTAAGGTGGTTAAGGAGATG 1197
Query 1198 GAAGAGAGAGGGATTAAACCGTCGAAAGTAACATACACGATACTTATCGACACATTTGCT 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1198 GAAGAGAGAGGGATTAAACCGTCGAAAGTAACATACACGATACTTATCGACACGTTTGCT 1257
Query 1258 CGTTCGGATAACATGGAGAAAGCAATTCAGCTTCGACTATCAATGGAGGAACTAGGATTA 1317
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1258 CGTACGGATAACATGGAGAAAGCAATTCAGCTTCGATTATCAATGGAGGAACTAGGATTA 1317
Query 1318 GTCCCGGATGTTCATACCTATAGTGTATTGATTCATGGGTTTTGCATCAAAGGTCAAATG 1377
||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 1318 ACCCCGGATGTTCATACCTATAGCGTATTGATTCACGGGTTTTGCATCAAAGGTCGAATG 1377
Query 1378 AATGAAGCATCTAGGCTTTTTAAGTCGATGGTCGAAAAGAA-TTGTGAACCGAACGAGGT 1436
||||||||||| ||||||||||||||||||||||||||||| || |||||| ||||||||
Sbjct 1378 AATGAAGCATCGAGGCTTTTTAAGTCGATGGTCGAAAAGAAGTT-TGAACCAAACGAGGT 1436
Query 1437 TATATACAATACGATGATTCTTGGTTATTGTAAGGAAGGTAGTTCTTATAGAGCATTGAA 1496
||||||||||| ||| |||| || ||||| ||||||||||||||||||||||||||||
Sbjct 1437 GATATACAATACAATGGTTCTCGGGTATTGCAAGGAAGGTAGTTCTTATAGAGCATTGAG 1496
Query 1497 GTTGCTTAAGG-AGATGGAAGAGAAAGAGTTGGCTCCAAATGTTGCTAGCTACAGATATA 1555
|||| || ||| |||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 1497 GTTG-TTCAGGGAGATGGAAGAGAAAGAGTTGCCTCCAAATGTTGCTAGCTATAGGTATA 1555
Query 1556 TGATTGAAGTTCTTTGTAAAGAAAGAAAATCGAAAGAAGCTGAGCGTTTAGTTGAGAAGA 1615
||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||
Sbjct 1556 TGATTGAAGTTCTTTGTAAAGAACGAAAATCGAAAGAAGCTGAGGGTTTGGTTGAGAAGA 1615
Query 1616 TGATTGATTCAGGGATTGATCCATCT-ACTTCAATCCTTAGTTTGATCTCTAGAGCCAAA 1674
|||||||||||||||||| ||||||| | ||||||||||| ||||||||||||||| |||
Sbjct 1616 TGATTGATTCAGGGATTGGTCCATCTGA-TTCAATCCTTAATTTGATCTCTAGAGCTAAA 1674
Query 1675 AACGATTCACAT 1686
|| |||||||||
Sbjct 1675 AATGATTCACAT 1686
> Ahg943036 jgi|Araly1|943036|scaffold_603580.1
Length=1768
Score = 2475 bits (1340), Expect = 0.0
Identities = 1591/1711 (93%), Gaps = 22/1711 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCAAAATCCCAGAAAACCCTCGTTCTGCTAGCGAATTTAATCAAGTTTCCTCCA 60
||||||||||||||||||||||||||| |||| ||||| ||| |||||||| ||||||||
Sbjct 21 ATGGCGGCAAAATCCCAGAAAACCCTCATTCTACTAGCAAATCTAATCAAGGTTCCTCCA 80
Query 61 TTAAAAGCTTTTTCTCTCTTAAATTCTCCAAATTTCCATGAATTTCAACACACACACGAA 120
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 81 TTAAAAGCTTTCTCTCTCTTAAATTCTCCAAATTTCCATGGATTTCAACACACACACGAA 140
Query 121 TCAATCTCAATCCTTCTTCGTCTCCTTCTCTCTGGGAACTTATTCTCTCACGCTCAATCA 180
|| || ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 141 TCCATATCAATCCTTCTTCGTCTCCTTCTCTCTGGAAACTTATACTCTCACGCTCAATCA 200
Query 181 CTTCTTCTACAAGTAATCTCCGGAAAAATCCACTCCCAATTCTTCACATCTTCCTCTCTG 240
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 201 CTTCTCCTTCAAGTAATCTCCGGAAAAATCCAATCCCAATTCTTCACATCTTCCTCTCTG 260
Query 241 TTACACTATTTGACAGAATCAGAAACGTCAAAAACAAAGTTTCGTCTCTACGAGGTAATC 300
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 261 CTACACTATTTGACAGAATCAGAAACGTCAAAAACCAAGTCTCGTCTCTACGAGGTAATC 320
Query 301 ATCAATTCCTATGTTCAATCTCAATCCCTAAACTT-ATCAATCTCTTACTTCAACGAAAT 359
|||||| ||||||||||||||||||||||| | || |||||||| |||||||||||||||
Sbjct 321 ATCAATGCCTATGTTCAATCTCAATCCCTAGA-TTCATCAATCTATTACTTCAACGAAAT 379
Query 360 GGTCGATAATGGTTTTGTTCCTGGATCGAATTGCTTCAACTATCTCTTAACTTTCGTTGT 419
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 380 GGTCGATAAGGGTTTTGTTCCTGGATCGAATTGCTTCAACAATCTCTTAACTTTCGTTGT 439
Query 420 TGGGTCATCTTCTTTCAATCAATGGTGGAGTTTCTTCAACGAGAACAAAAGCAAAGTTGT 479
|||||| ||||||||||||||||||||| ||||||||||||||| ||||| |||||||||
Sbjct 440 TGGGTCTTCTTCTTTCAATCAATGGTGGTGTTTCTTCAACGAGAGCAAAATCAAAGTTGT 499
Query 480 TTTGGACGTGTATAGCTTTGGGATTCTGATCAAAGGTTGTTGTGAAGCTGGTGAGATTGA 539
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 500 TTTGGATGTGTATAGCTTTGGGATTGTGATCAAAGGTTGTTGTGAAGCTGGTGAGATTGA 559
Query 540 GAAAAGCTTTGATCTTCTTATTGAATTGACAGAGTTTGGGTTTTCTCCAAATGTAGTTAT 599
|||||| |||||||||||| ||||||| | ||||||||||||||||||||| || |||||
Sbjct 560 GAAAAGTTTTGATCTTCTTGTTGAATTAAGAGAGTTTGGGTTTTCTCCAAACGTTGTTAT 619
Query 600 CTACACTACTTTGATTGATGGGTGTTGCAAGAAAGGTGAGATTGAGAAGGCTAAAGATTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 620 CTACACTACTTTGATTGATGGGTGTTGCAAGAAAGGTGAGATTGAGAAGGCGAAAGATTT 679
Query 660 GTTTTTTGAGATGGGGAAACTT-GGATTAGTGGCTAATGAGCGTACTTACACGGTTTTGA 718
|||||||||||||||| || || |||||||||||||||||| | ||||||||||||||||
Sbjct 680 GTTTTTTGAGATGGGG-AAGTTCGGATTAGTGGCTAATGAGTGGACTTACACGGTTTTGA 738
Query 719 TTAATGGGTTATTCAAAAACGGGGTTAAGAAACAAGGGTTTGAGATGTATGAGAAGATGC 778
|| |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 739 TTCATGGGTTATTCAAAAATGGGATTAAGAAACAAGGGTTTGAGATGTACGAGAAGATGC 798
Query 779 AGGAAGATGGAGTTTTCCCTAATCTCTATACTTATAACTGTGTGATGAATCAGCTTTGTA 838
||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 799 AGGAACATGGTGTTTTCCCTAATCTCTATACTTATAACTGCGTGATGAATCAGCTTTGTA 858
Query 839 AAGATGGAAGAACAAAAGATGCATTCCAAGTGTTCGACGAAATGCGTGAGAGAGGGGTTT 898
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 859 AAGATGGAAGAACAAAAGATGCATTTAAAGTGTTCGACGAAATGCGTGAGAGAGGGGTTT 918
Query 899 CTTGTAACATTGTCACTTATAATACTTTGATTGGTGGGTTATGTAGAGAGATGAAGTTGA 958
| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 919 CGTGTAATATTGTTACTTATAATACTTTGATTGGTGGGTTATGTAGAGAGATGAAGGCGA 978
Query 959 ATGAGGCAAATAAAGTTGTGGATCAAATGAAGAGTGATGGAATCAACCCGAATCTGATTA 1018
|||| |||| ||| ||| ||||||| ||||||||| ||| ||||||||||||||||||||
Sbjct 979 ATGATGCAATTAAGGTTATGGATCAGATGAAGAGTTATGTAATCAACCCGAATCTGATTA 1038
Query 1019 CGTATAACACTTTGATTGATGGGTTTTGTGGTGTGGGAAAATTAGGGAAGGCGTTGAGTT 1078
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1039 CGTATAACACTTTGATTGATGGGTTTTGTAGTGTGGGTAAATTAGGGAAGGCGTTGAGTT 1098
Query 1079 TATGCAGAGATTTGAAGTCAAGAGGTCTGTCTCCGTCCCTCGTCACGTATAATATCCTAG 1138
|||||||||||||||||||||||||| |||||||||| | || ||||||||| | || |
Sbjct 1099 TATGCAGAGATTTGAAGTCAAGAGGTTTGTCTCCGTCTTTGGTTACGTATAATGTTCTTG 1158
Query 1139 TTTCCGGGTTCTGTAGAAAAGGAGATACTTCAGGAGCAGCTAAGATGGTTAAGGAGATGG 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 TTTCCGGGTTCTGTAGAAAAGGAGATACTTCAGGAGCAGCTAAGATGGTTAAGGAGATGG 1218
Query 1199 AAGAGAGAGGGATTAAACCGTCGAAAGTAACATACACGATACTTATCGACACATTTGCTC 1258
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1219 AAGAGAGAGGGATTAAGCCGTCGAAAGTAACATACACGATTCTTATCGACACATTTGCTC 1278
Query 1259 GTTCGGATAACATGGAGAAAGCAATTCAGCTTCGA-CTATCAATGGAGGAACTAGGATTA 1317
|||| ||||||||||||| |||||||||||||||| || |||||||||||||||||||||
Sbjct 1279 GTTCAGATAACATGGAGACAGCAATTCAGCTTCGATCT-TCAATGGAGGAACTAGGATTA 1337
Query 1318 GTCCCGGATGTTCATACCTATAGTGTATTGATTCATGGGTTTTGCATCAAAGGTCAAATG 1377
||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||
Sbjct 1338 GTCCCGGATGTTCATACATATAGTGTACTGATTCACGGGTTTTGTATCAAAGGTCAAATG 1397
Query 1378 AATGAAGCATCTAGGCTTTTTAAGTCGATGGTCGAAAAGAA-TTGTGAACCGAACGAGGT 1436
|||||||| || |||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1398 AATGAAGCGTCGAGGCTTTTTAAGTCGATGGTCGAAAAGATGTTA-GAACCGAACGAGGT 1456
Query 1437 TATATACAATACGATGATTCTTGGTTATTGTAAGGAAGGTAGTTCTTATAGAGCATTGAA 1496
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1457 GATTTACAATACAATGATTCTTGGGTATTGTAAGGAAGGTAGTTCTTATAGAGCATTGAG 1516
Query 1497 GTTGCTTAAGG-AGATGGAAGAGAAAGAGTTGGCTCCAAATGTTGCTAGCTACAGATATA 1555
|||| || ||| | |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1517 GTTG-TTCAGGGATATGGAAGAGAAAGAGTTGGCTCCAAATGTTGCTAGCTATAGTTATT 1575
Query 1556 TGATT-GAAGTTCTTTGTAAAGAAAGAAAATCGAAAGAAGCTGA-GCGTTTAGTTGAGAA 1613
||||| || |||||||||||||||||||||| ||||||||| || | ||| ||||||||
Sbjct 1576 TGATTCGA-GTTCTTTGTAAAGAAAGAAAATTGAAAGAAGCAGAAGA-TTTGGTTGAGAA 1633
Query 1614 GATGATTGATTCAGGGATTGATCCATCT-ACTTCAATCCT-TAGTTTGATCTCTAGAGCC 1671
|||||||||||||||||||||||||||| | | ||||| | || ||||||||||||||||
Sbjct 1634 GATGATTGATTCAGGGATTGATCCATCTGA-TACAATC-TGTAATTTGATCTCTAGAGCC 1691
Query 1672 AAAAAC-GATTCACATGTAAGCTCAAAATAA 1701
|||| | ||||||| |||| ||||||| |||
Sbjct 1692 AAAA-CTGATTCACCTGTA-GCTCAAA-TAA 1719
> Ahg925928 jgi|Araly1|925928|scaffold_201489.1
Length=1747
Score = 2464 bits (1334), Expect = 0.0
Identities = 1588/1710 (93%), Gaps = 19/1710 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCAAAATCCCAGAAAACCCTCGTTCTGCTAGCGAA-TTTAATCAAGTTTCCTCC 59
||||||||||||||||||||||||||| |||| ||||| || | |||||||| |||||||
Sbjct 21 ATGGCGGCAAAATCCCAGAAAACCCTCATTCTACTAGC-AACTCTAATCAAGGTTCCTCC 79
Query 60 ATTAAAAGCTTTTTCTCTCTTAAATTCTCCAAATTTCCATGAATTTCAACACACACACGA 119
| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 80 ACTAAAAGCTTTCTCTCTCTTAAATTCTCCAAATTTCCATGGATTTCAACACACACACGA 139
Query 120 ATCAATCTCAATCCTTCTTCGTCTCCTTCTCTCTGGGAACTTATTCTCTCACGCTCAATC 179
||| || ||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 140 ATCCATATCAATCCTTCTTCGTCTCCTTCTCTCTGGAAACTTATACTCTCACGCTCAATC 199
Query 180 ACTTCTTCTACAAGTAATCTCCGGAAAAATCCACTCCCAATTCTTCACATCTTCCTCTCT 239
|||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 200 ACTTCTCCTTCAAGTAATCTCCGGAAAGATCCAATCCCAATTCTTCACATCTTCCTCTCT 259
Query 240 GTTACACTATTTGACAGAATCAGAAACGTCAAAAACAAAGTTTCGTCTCTACGAGGTAAT 299
| |||||||| |||||||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 260 GCTACACTATGTGACAGAATCAGAAACGTCAGAAACCAAGTCTCGTCTCTACGAGGTAAT 319
Query 300 CATCAATTCCTATGTTCAATCTCAATCCCTAAACTT-ATCAATCTCTTACTTCAACGAAA 358
|||||| ||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 320 GATCAATGCCTATGTTCAATCTCAATCCCTAGA-TTCCTCAATCTCTTACTTCAACGAAA 378
Query 359 TGGTCGATAATGGTTTTGTTCCTGGATCGAATTGCTTCAACTATCTCTTAACTTTCGTTG 418
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 379 TGGTCGATAAGGGTTTTGTTCCTGGATCGAATTGCTTCAACAATCTCTTAACTTTCGTTG 438
Query 419 TTGGGTCATCTTCTTTCAATCAATGGTGGAGTTTCTTCAACGAGAACAAAAGCAAAGTTG 478
||||||| ||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct 439 TTGGGTCTTCTTCTTTCAATCAATGGTGGCGTTTCTTCAACGAGAGCAAAATCAAAGTTG 498
Query 479 TTTTGGACGTGTATAGCTTTGGGATTCTGATCAAAGGTTGTTGTGAAGCTGGTGAGATTG 538
||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 499 ATTTAGATGTGTATAGCTTTGGGATTGTGATCAAAGGTTGTTGTGAAGCTGGTGAGATTG 558
Query 539 AGAAAAGCTTTGATCTTCTTATTGAATTGACAGAGTTTGGGTTTTCTCCAAATGTAGTTA 598
||||||| |||||||||||| ||||||| | ||||||||||||||||||||| || ||||
Sbjct 559 AGAAAAGTTTTGATCTTCTTGTTGAATTAAGAGAGTTTGGGTTTTCTCCAAACGTTGTTA 618
Query 599 TCTACACTACTTTGATTGATGGGTGTTGCAAGAAAGGTGAGATTGAGAAGGCTAAAGATT 658
||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||
Sbjct 619 TCTACACTACTTTGATTGATGGGTGTTGCAAGAGAGGAGAGATTGAGAAGGCGAAAGATT 678
Query 659 TGTTTTTTGAGATGGGGAAACTT-GGATTAGTGGCTAATGAGCGTACTTACACGGTTTTG 717
||||||||||||||||| || || ||||||||||||||||| | |||||||||||||||
Sbjct 679 TGTTTTTTGAGATGGGG-AAGTTCGGATTAGTGGCTAATGAATGGACTTACACGGTTTTG 737
Query 718 ATTAATGGGTTATTCAAAAACGGGGTTAAGAAACAAGGGTTTGAGATGTATGAGAAGATG 777
||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||
Sbjct 738 ATTCATGGGTTATTCAAAAATGGGATTAAGAAACAAGGGTTTGAGATGTACGAGAAGATG 797
Query 778 CAGGAAGATGGAGTTTTCCCTAATCTCTATACTTATAACTGTGTGATGAATCAGCTTTGT 837
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 798 CAGGAAGATGGTGTTTTCCCTAATCTCTATACTTATAACTGCGTGATGAATCAGCTTTGT 857
Query 838 AAAGATGGAAGAACAAAAGATGCATTCCAAGTGTTCGACGAAATGCGTGAGAGAGGGGTT 897
|||||||||||||| |||||||| || || ||||||||||||||||||||||||| |||
Sbjct 858 AAAGATGGAAGAACTAAAGATGCGTTTAAACTGTTCGACGAAATGCGTGAGAGAGGAGTT 917
Query 898 TCTTGTAACATTGTCACTTATAATACTTTGATTGGTGGGTTATGTAGAGAGATGAAGTTG 957
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 918 TCTTGTAACATTGTTACTTATAATACTTTGATTGGTGGGTTATGTAGAGAGATGAAGGCG 977
Query 958 AATGAGGCAAATAAAGTTGTGGATCAAATGAAGAGTGATGGAATCAACCCGAATCTGATT 1017
||||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 978 AATGAAGCTAATAAGGTTATGGATCAAATGAAGAGTGATGGAATCAACCCGAATCTGATT 1037
Query 1018 ACGTATAACACTTTGATTGATGGGTTTTGTGGTGTGGGAAAATTAGGGAAGGCGTTGAGT 1077
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1038 ACGTATAACACTTTGATTGATGGGTTTTGTGGCGTGGGAAAATTGGGGAAGGCGTTGAGT 1097
Query 1078 TTATGCAGAGATTTGAAGTCAAGAGGTCTGTCTCCGTCCCTCGTCACGTATAATATCCTA 1137
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 1098 TTATGCAGAGATTTGAAGTCAAGAGGTCTGTCTCCGTCTCTTGTCACGTATAATATTCTA 1157
Query 1138 GTTTCCGGGTTCTGTA-GAAAAGGAGATACTTCAGGAGCAGCTAAGATGGTTAAGGAGAT 1196
||||||||||| |||| |||| || |||||||||||||||| |||| |||||||||||||
Sbjct 1158 GTTTCCGGGTTTTGTAAGAAAGGG-GATACTTCAGGAGCAGGTAAGGTGGTTAAGGAGAT 1216
Query 1197 GGAAGAGAGAGGGATTAAACCGTCGAAAGTAACATACACGATACTTATCGACACATTTGC 1256
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1217 GGAAGAGAGAGGGATTAAACCGTCGAAAATAACATACACGATACTTATCGACACATTTGC 1276
Query 1257 TCGT-TCGGATAACATGGAGAAAGCAATTCAGCTTCGA-CTATCAATGGAGGAACTAGGA 1314
|||| | ||||||||||||||||||||||||||||||| | ||||||||||||||| ||
Sbjct 1277 TCGTAT-GGATAACATGGAGAAAGCAATTCAGCTTCGATC-ATCAATGGAGGAACTCGGT 1334
Query 1315 TTAGTCCCGGATGTTCATACCTATAGTGTATTGATTCATGGGTTTTGCATCAAAGGTCAA 1374
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 TTAACCCCGGATGTTCATACCTATAGTGTATTGATTCATGGGTTTTGCATCAAAGGTCAA 1394
Query 1375 ATGAATGAAGCATCTAGGCTTTTTAAGTCGATGGTCGAAAAGAA-TTGTGAACCGAACGA 1433
|||||||||||||| ||||||||||||| |||||||| |||||| || ||||||||| |
Sbjct 1395 ATGAATGAAGCATCGAGGCTTTTTAAGTTGATGGTCGCAAAGAAGTTA-GAACCGAACAA 1453
Query 1434 GGTTATATACAATACGATGATTCTTGGTTATTGTAAGGAAGGTAGTTCTTATAGAGCATT 1493
|| ||||||||||| ||| |||| || || || ||||||||||||||||||||||||||
Sbjct 1454 AGTGATATACAATACAATGGTTCTCGGGTACTGCAAGGAAGGTAGTTCTTATAGAGCATT 1513
Query 1494 GAAGTTGCTTAAGG-AGATGGAAGAGAAAGAGTTGGCTCCAAATGTTGCTAGCTACAGAT 1552
|| |||| || ||| |||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1514 GAGGTTG-TTCAGGGAGATGGAAGAGAAAGAGTTGCCTCCAAATGTTGCTAGCTATAGAT 1572
Query 1553 ATATGATTGAAGTTCTTTGTAAAGAAAGAAAATCGAAAGAAGCTGAGCGTTTAGTTGAGA 1612
|||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||
Sbjct 1573 ATATGATTGAAGTTCTTTGTAAAGAACGAAAATCGAAAGAAGCTGAGGGTTTGGTTGAGA 1632
Query 1613 AGATGATTGATTCAGGGATTGATCCATCT-ACTTCAATCCTTAGTTTGATCTCTAGAGCC 1671
||||||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 1633 AGATGATTGATACAGGGATTGATCCATCTGA-TTCAATCCTTAATTTGATCTCTAGAGCC 1691
Query 1672 AAAAACGATTCACATGTAAGCTCAAAATAA 1701
||||| |||||||||||||||||||| |||
Sbjct 1692 AAAAATGATTCACATGTAAGCTCAAA-TAA 1720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63801160375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5