BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G11700.1

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg925929 jgi|Araly1|925929|scaffold_201490.1                        320    6e-87
  Ahg352254 jgi|Araly1|352254|fgenesh1_pg.C_scaffold_6002847          82.4    3e-15


> Ahg925929 jgi|Araly1|925929|scaffold_201490.1
Length=448

 Score =  320 bits (173),  Expect = 6e-87
 Identities = 231/259 (89%), Gaps = 4/259 (2%)
 Strand=Plus/Plus

Query  177  TGGCCGATTTTACGTGCTGGACAAGTCACAGATCGAAGACAATGCATGGATTCTTCTCTA  236
            ||||||||||||||| ||| |||| ||| |||||||||| |||| |||||||||||||||
Sbjct  89   TGGCCGATTTTACGTTCTGAACAAATCAGAGATCGAAGATAATGAATGGATTCTTCTCTA  148

Query  237  TTTGGAGCTTGTTGTGGCCACATCTTTCAGGAACCATATCACACATGGTCTAACCAGTTT  296
            ||| || |||| ||| |||||||||||||||||||||| || ||||||||||| ||||||
Sbjct  149  TTTAGAACTTGCTGTTGCCACATCTTTCAGGAACCATACCAAACATGGTCTAATCAGTTT  208

Query  297  GAAGATTCTTAAAGTGGCTATGGAAATTTCAAGAAGCCCCGG-GG-TCTCTGTTAATATG  354
            ||||||||| ||||| |||||||||||| ||  ||| || || ||  | || |||||| |
Sbjct  209  GAAGATTCTGAAAGTAGCTATGGAAATTCCACCAAG-CCTGGTGGAGC-CTTTTAATAAG  266

Query  355  GGACTTGACGCCTATGATGCAACTTTCTACATTAGCTACAAGGACTTTTGCAAGGCTCGG  414
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  267  GGACTTGACGCCTATGATGCAATTTTCTACATTAGCTACAAGGACTTTTGCAAGGCTCGG  326

Query  415  GTTGGTAAGGAAGTCGATC  433
            ||||||||||| |||||||
Sbjct  327  GTTGGTAAGGATGTCGATC  345


> Ahg352254 jgi|Araly1|352254|fgenesh1_pg.C_scaffold_6002847
Length=1755

 Score = 82.4 bits (44),  Expect = 3e-15
 Identities = 46/47 (98%), Gaps = 0/47 (0%)
 Strand=Plus/Minus

Query  501   GAGCTCACAAACCATCAAACCATCAAACACCATGGATGCTGGCTCCT  547
             |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  1752  GAGCTCACAAACCATCAAACCATCAAACACCATGGAAGCTGGCTCCT  1706



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20146150992


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5