BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11720.1
Length=2248
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895371 jgi|Araly1|895371|Al_scaffold_0006_3367 3271 0.0
Ahg895358 jgi|Araly1|895358|Al_scaffold_0006_3354 2988 0.0
> Ahg895371 jgi|Araly1|895371|Al_scaffold_0006_3367
Length=2127
Score = 3271 bits (1771), Expect = 0.0
Identities = 2015/2132 (95%), Gaps = 19/2132 (1%)
Strand=Plus/Plus
Query 37 ATGGTGAACGCGATTTTAATGGCTTGTATACTCGCCGGAATTTTCGTCGGAATGTTCAAC 96
||||||||| ||||||||||||||||| || ||||||||||| |||||||| | || |||
Sbjct 1 ATGGTGAACCCGATTTTAATGGCTTGTGTAATCGCCGGAATTGTCGTCGGAGTATTTAAC 60
Query 97 GAAGTCGACGGAATTCAGATTTTATCGAAATCAAAGCTCGAAAAGTGTGAGAAAACATCA 156
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 61 GAAGTCGACGGAATTCAGATTTTATCGAAATCAAAGCTGGAGAAGTGTGAGAAAACATCA 120
Query 157 GATTCTGGTAATCTCAATTGTTCCACTAAGATCGTCTTGAATCTCGCTGTTCCCAGTGGA 216
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTCTGGTAATCTCAATTGTTCTACTAAGATCGTCTTGAATCTCGCTGTTCCCAGTGGA 180
Query 217 TCCAGTGGAGGAGAGGCTTCGATTGTAGCGGAGATCGTGGAGGTTGAAGATAACTCGAGT 276
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 181 TCCAGTGGAGGAGAGGCTTCGATCGTAGCGGAGATCGTCGAGGTTGAAGATAATTCGAGT 240
Query 277 AGTAATATGCAAACCGTACGGATTCCACCGGTTATTACAGTGAACAAATCTGCAGCATAT 336
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 AGTAATATGCAAACCGTACGGATTCCACCGGTTATTACAGTGAACAAATCCGCAGCATAT 300
Query 337 GCTCTCTATGATCTTACTTACATTAGGGATGTACCTTATAAACCTCAAGAGTATCATGTC 396
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 301 GCTCTTTATGATCTTACTTACATTAGGGATGTGCCTTATAAACCTCAAGAGTATCATGTT 360
Query 397 ACGACTCGAAAGTGTGAACACGATGCTGGACCGGATATTGTACAAATTTGTGAGAGGTTG 456
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 ACGACTCGAAAGTGTGAACCCGATGCTGGACCGGATATTGTACAAATATGTGAGAGGTTG 420
Query 457 AGAGATGAG-AAGGGTAATGTTTTAGAGCAGACTCAGCCGATTTGTTGTCCATGTGGACC 515
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 AGAGATGAGAAAGGG-AATGTTTTGGAGCAGACTCAGCCGATTTGTTGTCCATGTGGACC 479
Query 516 GCA-ACGAAGAATGCCTTCTTCTTGTGGAGATATTTTTGATAAGATGATTAAAGGGAAGG 574
||| | ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 480 GCAGA-GAAGAATGCCTTCATCTTGTGGAGATATTTTTGATAAGATGATAAAAGGCAAGG 538
Query 575 CAAATACCGCGCATTGCCTTCGTTTTCCAGGTGACTGGTTCCATGTTTTCGGGATTGGAC 634
||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 539 CAAATACTGCGCATTGCCTTCGTTTTCCAGGTGACTGGTTCCATGTTTTCAGCATTGGAC 598
Query 635 AACGGTCACTAGGATTTAGTGTGCGAGTTGAGTTGAAAACAGGAACTAGAGTTTCAGAAG 694
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AACGGTCACTAGGATTTAGCGTGCGAGTTGAGTTGAAAACAGGAACTAGAGTTTCAGAAG 658
Query 695 TGATCATTGGTCCTGAAAATAGGACAGCTACTGCAAATGATAACTTTCTCAAAGTTAATC 754
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 659 TGATCATTGGTCCTGAAAATAGGACAGCTACTGCAAATGATAATTTTCTCAAGGTTAATC 718
Query 755 TCATAGGAGACTTTGGTGGTTACACAAGTATTCCTTCTTTCGAGGACTTCTATCTTGTAA 814
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 719 TCATAGGAGACTTTGGTGGTTATACAAGTATTCCTTCTTTCGAGGACTTCTATCTTGTAA 778
Query 815 TCCCAAGAGAGGCGGCTGAAGCGGGACAACCAGGGAGCTTAGGCGCAAATTACTCAATGT 874
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCCCAAGAGAGGCGGCTGCAGCGGGACAACCAGGGAGCTTAGGCGCAAATTACTCAATGT 838
Query 875 GGATGCTGCTTGAGAGAGTGAGATTTACATTGGATGGCTTAGAATGTAATAAAATCGGTG 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GGATGCTGCTTGAGAGAGTGAGATTTACATTGGATGGCTTAGAATGTAATAAAATCGGTG 898
Query 935 TTGGTTATGAAGCTTTCAACACCCAACCAAATTTCTGCTCTTCTCCATATTGGAGTTGCT 994
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 899 TTGGTTATGAAGCTTTCAACACCCAACCAAATTTCTGCTCTTCACCATATTGGAGTTGCT 958
Query 995 TGCATAATCAACTATGGAACTTCCGTGAGTCAGATATAAACAGAATC-GACCGACACCAA 1053
||||||||||||||||||||||||| ||| ||||||| ||| ||||| | ||||||||||
Sbjct 959 TGCATAATCAACTATGGAACTTCCGCGAGGCAGATATTAACCGAATCAG-CCGACACCAA 1017
Query 1054 CTTCCTTTATATGGACTTGAAGGAAGATTTGAGAGGATCAATCAACATCCAAACGCGGGG 1113
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1018 CTTCCTTTATATGGACTGGAAGGAAGATTTGAGAGGATTAATCAACATCCAAACGCAGGG 1077
Query 1114 CCTCACTCGTTCTCAATTGGAGTCACGGAAACACTCAACACAAATCTAATGATAGAACTA 1173
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CCTCACTCGTTCTCGATTGGAGTCACGGAAACACTCAACACAAATCTAATGATAGAACTA 1137
Query 1174 AGAGCTGATGATATTGAATACGTTTTCCAGAGGAGTCCC-GGTAAGATCATAAACATCGC 1232
||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct 1138 AGAGCTGATGATATTGAATACGTTTTCCAGAGGAG-CCCTGGTAAAATCATAAACATCGC 1196
Query 1233 GATACCGACATTCGAAGCACTTACACAATTCGGAGTTGCTGCAGTCATAATCAAGAATAC 1292
||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1197 TATACCCACATTTGAGGCACTTACACAATTCGGAGTTGCTGCAGTCACAATCAAGAATAC 1256
Query 1293 TGGTGAAGTAGAAGCGTCTTATAGCTTAACGTTTGATTGCTCCAAAGGCGTGGCTTTTGT 1352
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CGGTGAAGTAGAAGCATCTTATAGCTTAACGTTTGATTGCTCCAAAGGCGTGGCTTTTGT 1316
Query 1353 TGAGGAACAATTTTTCATTATAAAACCGAAAGCGGTTACTACTCG-GTCTTTTAAGCTGT 1411
|||||| ||||| |||||||||||||| ||||||||||||||||| | |||||||||| |
Sbjct 1317 TGAGGAGCAATTCTTCATTATAAAACCAAAAGCGGTTACTACTCGAG-CTTTTAAGCTAT 1375
Query 1412 ACCCGACGAAAGATCAGGCTGCAAAGTATATATGCACAGCTATACTCAAGGACTCTCAGT 1471
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1376 ACCCGACGAAAGATCAAGCTGCAAAGTATATATGCACAGCTATACTCAAGGATTCTCAGT 1435
Query 1472 TCAGCGAAGTAGACCGAGCCGAGTGTCAATTTAGTACAACGGCTACCGTACTTGACAATG 1531
|||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1436 TCAGTGAAGTAGACAGAGCCGAGTGTCAATTTAGTACAACGGCTACCGTACTCGACAATG 1495
Query 1532 GAACTCAGGTTACTAATCCATTTCAAATTCCAGAGACTCAACCTAAAGGTTTCTTTGATT 1591
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1496 GAACTCAGGTTACTAATCCATTTCAAATTCCAGAAACTCATCCTAAAGGTTTCTTTGATT 1555
Query 1592 CGATCAGGATACTATGGACGAAAATCATCAATGGTTTAGTCGATTTCATCACCGGAGATA 1651
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 CGATAAGGATACTAGGGACGAAAATCATCAATGGTTTAGTCGATTTCATCACCGGAGATA 1615
Query 1652 CTTGCAGAAACAAATGCTCGAGTTTCTTCGACTTCAGTTGCCACATTCAATACGTTTGCT 1711
|||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |
Sbjct 1616 CTTGCAGAAACAAATGCTCGAGTTTCTTTGATTTCAGCTGCCACATTCAATACGTTTGTT 1675
Query 1712 TAAGCTGGATGGTTATGTTTGGTCTTCTCCTCGCTCTCTTCCCAATTACTTGTTTGCTTC 1771
||||||||||||||||||| || |||||||||||||| ||||||| || ||||||||||
Sbjct 1676 TAAGCTGGATGGTTATGTTCGGCCTTCTCCTCGCTCTTTTCCCAACCACATGTTTGCTTC 1735
Query 1772 TTTGGCTCTTGCACCAAAAGGGACTCTTTGATCCATGCTACGACTGGTGGGAAGATCATT 1831
|||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1736 TTTGGCTCTTACACCAAAAGGGACTATTTGATCCATGCTACAACTGGTGGGAAGATCATT 1795
Query 1832 TCGATTTAGACCATCATCGGAGATTATTACCCTCCAGAGCAGACGTTGTTAACCGCCATC 1891
|||| |||||||||||| |||||||||||||| |||||| | || | | |||||||||||
Sbjct 1796 TCGACTTAGACCATCATAGGAGATTATTACCCACCAGAGAAAACATCGCTAACCGCCATC 1855
Query 1892 ATCACCATCACAAGCATCGTCAT-----CA---CC-ATAATCACCATCGTAGGACACACC 1942
|||||||||||||||||| |||| || || ||||||| ||||||||||||||||
Sbjct 1856 ATCACCATCACAAGCATCATCATGGTGTCAAAACCCATAATCATCATCGTAGGACACACC 1915
Query 1943 AGAGACACAAACATCATCATGGTCAAGACGACGACGTATTGCAGAAGATGATGCTTGAAC 2002
||||||||||||| |||||||| || || | ||||| |||||||||||||||||||| |
Sbjct 1916 AGAGACACAAACACCATCATGGGGAAAACCATGACGTTTTGCAGAAGATGATGCTTGACC 1975
Query 2003 GTGACCACAGCGACTCTCACTACTACCACCAACTTCATCGAGTCCATAAAGATAGCAAGC 2062
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 GTGACCACAGCGACGCTCACTACTACCACCAACTTCATCGAGTCCATAAAGATAGCAAGC 2035
Query 2063 AGAAGCAGCGTAGGCGAGCCAAGCACGGGATCGTCCTGCCACGTGATGTGCACGTGGAAA 2122
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 2036 AGAAGCAGCGTAGGCGAGCCAAGCACGGGATTGTCTTGCCACGTGATGTGCACGTGGAAA 2095
Query 2123 GACAGAGGAAACAAAGACTACGTGAGAGTTAA 2154
||| ||||| |||||||||||||||| |||||
Sbjct 2096 GACGGAGGAGACAAAGACTACGTGAGTGTTAA 2127
> Ahg895358 jgi|Araly1|895358|Al_scaffold_0006_3354
Length=2133
Score = 2988 bits (1618), Expect = 0.0
Identities = 1973/2142 (92%), Gaps = 33/2142 (2%)
Strand=Plus/Plus
Query 37 ATGGTGAACGCGATTTTAATGGCTTGTATACTCGCCGGAATT-TTCGTCGGAATGTTCAA 95
|||||||||||||| ||||||||| || |||||||| || || |||||||||| ||
Sbjct 1 ATGGTGAACGCGATCGCGATGGCTTGTGTAATCGCCGGAGTTGTT-ATCGGAATGTTAAA 59
Query 96 CGAAGTCGACGGAATTCAGATTTTATCGAAATCAAAGCTCGAAAAGTGTGAGAAAACATC 155
||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 60 CGAAGTCGACGGAATCCAGATTTTATCTAAATCAAAGCTGGAGAAGTGTGAGAAAACATC 119
Query 156 AGATTCTGGTAATCTCAATTGTTCCACTAAGATCGTCTTGAATCTCGCTGTTCCCAGTGG 215
||||| || ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 CGATTCAGGGAATCTAAATTGTTCAACTAAGATCGTCTTGAATCTCGCTGTTCCCAGTGG 179
Query 216 ATCCAGTGGAGGAGAGGCTTCGATTGTAGCGGAGATCGTGGAGGTTGAAGATAACTCGAG 275
|||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||
Sbjct 180 ATCCAGTGGAGGAGAGGCTTCGATCGTAGCGGAAATCGTGGAAGTTGAAGATAATTCGAG 239
Query 276 TAGTAATATGCAAACCGTACGGATTCCACCGGTTATTACAGTGAACAAATCTGCAGCATA 335
||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 240 TAGTAATATGCAAACTGTACGGATTCCACCGGTGATTACAGTGAATAAATCTGCAGCATA 299
Query 336 TGCTCTCTATGATCTTACTTACATTAGGGATGTACCTTATAAACCTCAAGAGTATCA-TG 394
||||||||||||||||||||||||||||||||||||||| || |||||||||||| | |
Sbjct 300 TGCTCTCTATGATCTTACTTACATTAGGGATGTACCTTACAAGCCTCAAGAGTAT-AGCG 358
Query 395 TCACGACTCGAAAGTGTGAACAC-GATGCTGGACCGGATATTGTACAAATTTGTGAGAGG 453
| ||||||||||||||||||| | ||||||||||| |||||||||||||| |||||||||
Sbjct 359 TTACGACTCGAAAGTGTGAAC-CTGATGCTGGACCTGATATTGTACAAATATGTGAGAGG 417
Query 454 TTGAGAGATGAGAAGGGTAATGTTTTAGAGCAGACTCAGCCGATTTGTTGTCCATGTGGA 513
||| ||||||||||||| |||||||| ||||||||||| || || |||||||||||||||
Sbjct 418 TTGCGAGATGAGAAGGGCAATGTTTTGGAGCAGACTCAACCTATATGTTGTCCATGTGGA 477
Query 514 CCGCAACGAAGAATGCCTTCTTCTTGTGGAGATATTTTTGATAAGATGATTAAAGGGAAG 573
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 478 CCGCAACGAAGAATGCCTTCATCTTGTGGAGATATTTTTGATAAGATGATAAAAGGGAAG 537
Query 574 GCAAATACCGCGCATTGCCTTCGTTTTCCAGGTGACTGGTTCCATGTTTTCGGGATTGGA 633
||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 538 GCAAATACCGCTCATTGCCTTCGTTTTCCAGGTGACTGGTTCCATGTTTTCAGCATTGGA 597
Query 634 CAACGGTCACTAGGATTTAGTGTGCGAGTTGAGTTGAAAACAGGAACTAGAGTTTCAGAA 693
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 598 CAACGGTCACTAGGATTTAGTGTGCGGGTTGAGTTAAAAACAGGAACTAGAGTTTCAGAA 657
Query 694 GTGATCATTGGTCCTGAAAATAGGACAGCTACTGCAAATGATAACTTTC-TCAAAGTTAA 752
|||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||
Sbjct 658 GTGATCATTGGTCCTGAAAATAGGACAGCTACTGCAAATGATAA-TTTCCTCAAGGTTAA 716
Query 753 TCTCATAGGAGACTTTGGTGGTTACACAAGTATTCCTTCTTTCGAGGACTTCTATCTTGT 812
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 717 TCTCATAGGAGACTTTGCTGGTTACACAAATATTCCTTCTTTCGAGGACTTCTATCTTGT 776
Query 813 AATCCCAAGAGAGGCGGCTGAAGCGGGACAACCAGGGAGCTTAGGCGCAAATTACTCAAT 872
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 777 AATCCCAAGAGAGGCGGCTGTAGCGGGACAACCAGGGAATTTAGGCGCAAATTACTCAAT 836
Query 873 GTGGATGCTGCTTGAGAGAGTGAGATTTACATTGGATGGCTTAGAATGTAATAAAATCGG 932
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GTGGATGCTCCTTGAGAGATTGAGATTTACATTGGATGGCTTAGAATGTAATAAAATCGG 896
Query 933 TGTTGGTTATGAAGC-TTTCAACACCCAACCAAATTTCTGCTCTTCTCCATATTGGAGTT 991
|||||| |||||||| ||| || | |||||||||||||||||||| |||||||||||||
Sbjct 897 TGTTGGCTATGAAGCCTTT-AATAGTCAACCAAATTTCTGCTCTTCACCATATTGGAGTT 955
Query 992 GCTTGCATAATCAACTATGGAACTTCCGTGAGTCAGATATAAACAGAATCGACCGACACC 1051
|||||||||||||||||||||||||||||||| ||||||| ||| | ||| ||||| |||
Sbjct 956 GCTTGCATAATCAACTATGGAACTTCCGTGAGGCAGATATTAACCGGATCAACCGAAACC 1015
Query 1052 AACTTCCTTTATATGGACTTGAAGGAAGATTTGAGAGGATCAATCAACATCCAAACGCGG 1111
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AACTTCCTTTATATGGACTGGAAGGAAGATTTGAGAGGATCAATCAACATCCAAACGCGG 1075
Query 1112 GGCCTCACTCGTTCTCAATTGGAGTCACGGAAACACTCAACACAAATCTAATGATAGAAC 1171
|||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1076 GGCCTCACTCGTTCTCCATTGGAGTCACAGAAACACTTAACACAAATCTGATGATAGAAC 1135
Query 1172 TAAGAGCTGATGATATTGAATACGTTTTCCAGAGGAGTCCC-GGTAAGATCATAAACATC 1230
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1136 TAAGAGCTGATGATATTGAATACGTTTTCCAGAGGAG-CCCTGGTAAGATCATAAACATA 1194
Query 1231 GCGATACCGACATTCGAAGCACTTACACAATTCGGAGTTGCTGCAGTCATAATCAAGAAT 1290
|| |||||||||||||| ||||||||||||||||||||||||||||| | || |||||||
Sbjct 1195 GCTATACCGACATTCGAGGCACTTACACAATTCGGAGTTGCTGCAGTTACAACCAAGAAT 1254
Query 1291 ACTGGTGAAGTAGAAGCGTCTTATAGCTTAACGTTTGATTGCTCCAAAGGCGTGGCTTTT 1350
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 ACAGGTGAAGTAGAAGCATCTTATAGCTTAACGTTTGATTGCTCCAAAGGCGTGGCTTTT 1314
Query 1351 GTTGAGGAACAATTTTTCATTATAAAACCGAAAGCGGTTACTACTCGGTCTTTTAAGCTG 1410
|||||||| ||||| |||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 1315 GTTGAGGAGCAATTCTTCATTATAAAACCAAAAGCGGTTACAACTCGATCTTTTAAGCTG 1374
Query 1411 TACCCGACGAAAGATCAGGCTGCAAAGTATATATGCACAGCTATACTCAAGGACTCTCAG 1470
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 1375 TACCCGACGAAAGATCAGGCTGCAAAATATATATGCACAGCTATACTCAAGGATTCTCTG 1434
Query 1471 TTCAGCGAAGTAGACCGAGCCGAGTGTCAATTTAGTACAACGGCTACCGTACTTGACAAT 1530
||||||||||||||| |||||||||||||||| || ||||||||||| ||||| ||||||
Sbjct 1435 TTCAGCGAAGTAGACAGAGCCGAGTGTCAATTCAGCACAACGGCTACTGTACTCGACAAT 1494
Query 1531 GGAACTCAGGTTACTAATCCATTTCAAATTCCAGAGACTCAACCTAAAGGTTTCTTTGAT 1590
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1495 GGAACTCAGGTTACTAATCCATTTCAAATTCCAGAGACTCGTCCTAAAGGTTTCTTTGAT 1554
Query 1591 TCGATCAGGATACTATGGACGAAAATCATCAATGGTTTAGTCGATTTCATCACCGGAGAT 1650
||||| |||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1555 TCGATTAGGATAATGTGGACGAAACTCATCAATGGTTTAGTCGATTTCATCACCGGAGAC 1614
Query 1651 ACTTGCAGAAACAAATGCTCGAGTTTCTTCGACTTCAGTTGCCACATTCAATACGTTTGC 1710
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1615 ACTTGCAGAAACAAATGCTCGAGTTTCTTCGACTTCAGCTGCCACATTCAATACGTTTGC 1674
Query 1711 TTAAGCTGGATGGTTATGTTTGGTCTTCTCCTCGCTCTCTTCCCAATTACTTGTTTGCTT 1770
|| ||||||||||||||||| || ||||||||||||||| |||||| |||||| | |||
Sbjct 1675 TTGAGCTGGATGGTTATGTTCGGCCTTCTCCTCGCTCTCATCCCAACCACTTGTGTCCTT 1734
Query 1771 CTTTGGCTCTTGCACCAAAAGGGACTCTTTGATCCATGCTACGACTGGTGGGAAGATCAT 1830
|| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1735 CTCTGGCTCTTGCACCAAAAGGGACTCTTTGATCCATTCTACGATTGGTGGGAAGATCAT 1794
Query 1831 TTCGATTTAGACCATCATCGGAGATTATTACC-CTC-C-AGAGCAGACGTTGTTAACCGC 1887
||||| |||||||||||||||||||| ||||| | | | |||| ||||| | | ||||||
Sbjct 1795 TTCGACTTAGACCATCATCGGAGATTGTTACCACCCACTAGAGAAGACGCTATAAACCGC 1854
Query 1888 CATCATCACCATCAC-A-----AGCATCGTCAT-----CA---C-CATAATCACCATCGT 1932
| ||||||||||||| | ||||||| ||| || | |||||||| ||||||
Sbjct 1855 CGTCATCACCATCACCATCGCCAGCATCGGCATGGTGTCAAAACTCATAATCATCATCGT 1914
Query 1933 AGGACACACCAGAGACACAAACATCATCATGGTCAAGACGACGACGTATTGCAGAAGATG 1992
|| |||||| ||||||||||||| || ||| |||||||||||||| |||||||| |
Sbjct 1915 AGAACACACAAGAGACACAAACACCACCATAACCAAGACGACGACGTTTTGCAGAA--T- 1971
Query 1993 ATGCTTGAACGTGACCACAGCGACTCTCACTACTACCACCAACTTCATCGAGTCCATAAA 2052
||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1972 ATGCTTGAACGTGACCACAACGAGTCTCACTACTACCACCAACTTCACCGAGTCCATAAA 2031
Query 2053 GATAGCAAGCAGAAGCAGCGTAGGCGAGCCAAGCACGGGATCGTCCTGCCACGTGATGTG 2112
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2032 GATAGCAAACAGAAGCAGCGTAGACGAGCCAAGCACGGGATCGTCCTGCCACGTGATGTG 2091
Query 2113 CACGTGGAAAGACAGAGGAAACAAAGACTACGTGAGAGTTAA 2154
|||||||| |||| || || |||||| |||||||||||||||
Sbjct 2092 CACGTGGATAGACGGAAGAGACAAAGGCTACGTGAGAGTTAA 2133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84636524390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5