BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11740.1
Length=2035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489990 jgi|Araly1|489990|fgenesh2_kg.6__3124__AT4G11740.1 2588 0.0
Ahg943680 jgi|Araly1|943680|scaffold_604224.1 73.1 7e-12
Ahg943059 jgi|Araly1|943059|scaffold_603603.1 73.1 7e-12
> Ahg489990 jgi|Araly1|489990|fgenesh2_kg.6__3124__AT4G11740.1
Length=1740
Score = 2588 bits (1401), Expect = 0.0
Identities = 1626/1731 (94%), Gaps = 30/1731 (2%)
Strand=Plus/Plus
Query 95 TATGGCGACACCGAATCAGGAAGCAATCGACACTTTCATCAGCATCACCGGCGCTTCTGA 154
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1 TATGGCGACACCGAATCAGGAATCAATCGACACTTTCATCAGCATCACCGGCGCTTCAGA 60
Query 155 CGCCGTCGCCCTTCAGAAACTCGAGGAGCATCGTGGTGATCTTAATCAAGCAGTGAATGC 214
|||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 61 GGCCGTCGCTCTTCAGAAACTCGAGGAACATCGTGGTGATCTTAATCAAGCTGTGAATGC 120
Query 215 ATATTTCAGCGAAGGAGATCGAAATGTAGTACGTGAAGCGCCGGTT-A-A----T-GATG 267
||||||| |||| |||||||||||||||||| |||||||||||||| | | | | ||
Sbjct 121 ATATTTCGGCGAGGGAGATCGAAATGTAGTAAGTGAAGCGCCGGTTAATATTTCTCG-TG 179
Query 268 ATGATGAAATGGATATAGATGATGTGATTCCGGCTCCACAATCTCCTCTCTCTATGTTCA 327
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 180 ATGATGAAATGGATATAGATGATGTGATTCCGCCTCCACAATCTCCTCTATCTATGTTCA 239
Query 328 ATGCAGCTAGAACAATTGGCCGTCC-TCCCTTTTCGCTTTTGGATTCGGACTTTGCTAGA 386
||||||||||||| | ||| | || ||||||||||||||||||||| ||||||||||||
Sbjct 240 ATGCAGCTAGAACGA-TGG--G-CCATCCCTTTTCGCTTTTGGATTCAGACTTTGCTAGA 295
Query 387 CGTGTATTTGATAGCGATCCTCTTATGCCACGCCCTCCGTTTGTTAGTCATCCTAGAGAG 446
|||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 296 CGTGTATTTGATAGCGATCCTCTTATGCCACGCCCTCCGTTTGTTAGTTATCCCAGGGAG 355
Query 447 GTTAGGCAGATACCTATAGAGGTTAAGGATAGCAGTGGGCCATCTGGACGATCTAGTGAT 506
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 356 GTTAGGCAGATACCAATAGAGGTTAAGGATAGCAGTGGGCCATCAGGACGATCTAGTGAT 415
Query 507 GCTCCTACTATTGAAGATGTGACAGAAACAGCTCATGTTCAGGGTCCAGTAACTACCCAA 566
|||||||||||||||||||||||||||||| | |||||||||||||||| |||| |||
Sbjct 416 GCTCCTACTATTGAAGATGTGACAGAAACAACACATGTTCAGGGTCCAG---CTACTCAA 472
Query 567 GGAACTGTTATTATTGATGAAGAGAGTGATGATGATATTCCTTTTGCACCAATGGGACGA 626
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 473 GGAACTGTTATTATAGATGAAGAGAGTGATGATGATATTCCTTTTGCTCCAATGGGACGA 532
Query 627 AGTAGGCAAGACAGACCTGCTGGTTCTGTAGCCAATAATAATAATCAAGATTACAATGAT 686
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 533 AGTAGGCAAGACAGACCTGCTGGTTCTGAAGCC---AATAATAATCAAGATTACAATGAT 589
Query 687 ATAGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCAAAGAAAGAGGCTGAGGGATCA 746
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 590 ATAGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCAAAGATGGAGGCTGAGGGATCA 649
Query 747 AGTAACCCTTTACTTGAAGAGAGGCCACTTCACATGGAAGATGATGATGACATAGCAATA 806
| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 650 AATAACCCTTTACTTGGAGAGAGGCCACCTCACATGGAAGATGATGATGACATAGCAAAA 709
Query 807 GCTGTTACAATGTCATTGAAGTCAGCGGAGGAAGAAGTTTTGCGCAGTCAAG-GGTATAA 865
|||||||| |||||| |||||||||| ||||||||||||||||||||||||| | | ||
Sbjct 710 GCTGTTACGATGTCACTGAAGTCAGCAGAGGAAGAAGTTTTGCGCAGTCAAGAGCT-TAT 768
Query 866 GGCCTCAACCTCGGAAATAGGAGCTTCTGCAGTGACTGCTGCTCAAGGACCTCAGGATAC 925
| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 769 GCCCTCAACCTCAGAAATAGGAGCTTCTGAAGTGACTGCTGCTCAAGGACCTCAGGATAC 828
Query 926 CCAGGCCCTGAACGGAAGATTGGCAGCACCTAGTTCACCATTTGATGATGACTCTGATGA 985
||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 829 CCAAGCCCTGAATGGAAGATTGGCGGCACCTAGCTCACCATTTGATGATGACTCTGATGA 888
Query 986 TGTTGATGAGCAACCTCTTGTTAGACACAGGCCAAGACGTGCAGCATCCGGATCTCTGGC 1045
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CGTTGATGAGCAACCTCTTGTTAGACACAGGCCAAGACGTGCAGCATCCGGATCTCTGGC 948
Query 1046 TCCACCTAACGCTGATCGTTCCCGGAGTGGGAGTCCTGAAGAAGAACATGCAAGTATTAA 1105
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 949 TCCACCTAACGCTGATCGTTCCCGGAGTGGGAGTCCTGAAGAAGAAGGTGCAAGTAGTAA 1008
Query 1106 TCCAGCGGAGCGTGGCAGTGGGTTTCCTTCTGAGTGGGGAGGCATTTCATCTGAGGAACA 1165
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 TCCACCGGAGCGTGGCAGTGGGTTTCCTTCTGAGTGGGGAGGCATTTCATCTGAGGAACA 1068
Query 1166 TGATGAAGCTGTCATGCTCGAGGCAGCCATGTTTGGTGGCATTCCTGAAACTGGATATAA 1225
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TGATGAAGCTGTCATGCTTGAGGCAGCCATGTTTGGTGGCATTCCTGAAACTGGATATAA 1128
Query 1226 TCATCTTCCAT-TCTTACCTCCTCAGCCGAGGGCCCAACCACGTCCACCCTCACCTTCGC 1284
||||||||||| | | ||||||||||||| |||| ||||| ||||||||||||||||| |
Sbjct 1129 TCATCTTCCATATAT-ACCTCCTCAGCCGTGGGCACAACCCCGTCCACCCTCACCTTCAC 1187
Query 1285 TGACAGCTCAGAGGTTGATACGGGAACAGCAGGATGATGAGTATGTTGCGTCCCTGCAAG 1344
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1188 TGACAGCTCAGAGGTTGATACGGGAACAGCAGGATGATGAGTATGTTGCATCCCTGCAAG 1247
Query 1345 CTGACCGAGATAAAGAAATGAAGTCCATTAGAGATGCTGAGGCACGTCAGCTagaggaag 1404
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1248 CTGACCGAGATAAAGAAATGAAATCCATAAGAGATGCTGAGGCACGTCAGCTAGAGGAAG 1307
Query 1405 aaactgcgagaaaggcttttctggaggaagaaaagaaaaaagaggaagaagctcaaagaa 1464
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 AAACTGCTAGAAAGGCTTTTCTGGAGGAAGAAAAGAAAAAAGAGGAAGAAGCTCAAAGAA 1367
Query 1465 aactcgaggaggaacaggagctagaaagaCAACTAGATGCAAAAGAAGCGTCTTTACCTA 1524
||||||||||||||||||||||||| || ||| |||| ||||||||||| ||| ||||||
Sbjct 1368 AACTCGAGGAGGAACAGGAGCTAGATAGGCAATTAGACGCAAAAGAAGCTTCTCTACCTA 1427
Query 1525 AGGAGCCTCAAGCTGATGAAGAGAATGCCATTACCCTTCTAATCCGGATGCCGGATGGAA 1584
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1428 AGGAGCCTCAAGCAGACGAAGAGAATGCCATTACCCTTCTAATCCGGATGCCGGATGGCA 1487
Query 1585 CACGTCGGGGCCGCCGGTTCCTTAAATCTGACAAACTCCAAACCCTTTTCAACTTTATAG 1644
|||| || |||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1488 CACGCCGTGGCCGCCGGTTCCTTAGATCTGACAAACTCCAATCCCTTTTCAACTTTATAG 1547
Query 1645 ACATTGCCAGAGTGGTGAAACCCAACACTTACAGACTGGTGAGGCCATATCCGAGGCATG 1704
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1548 ACATTGCCAGAGTGGTGAAACCCAACACTTATAGACTGGTGAGGCCATATCCGAGGCATG 1607
Query 1705 CGTTTGGAGATGGGGAAAGTGAGTCGAC-CTTAAACGATCTTGGATTGACCAGCAAACAA 1763
||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1608 CGTTTGGAGATGGAGAAAGTGAGTCGACTCT-AAACGATCTTGGATTGACCAGCAAACAA 1666
Query 1764 GAAGCATTGTTCCTTGAGCTTATCT-AGT---TTTAA-GCTCTTAAATATA 1809
|||||||| |||||||||||||||| || ||||| | |||||||||||
Sbjct 1667 GAAGCATTATTCCTTGAGCTTATCTGAGCAAGTTTAAAGTTCTTAAATATA 1717
> Ahg943680 jgi|Araly1|943680|scaffold_604224.1
Length=1455
Score = 73.1 bits (39), Expect = 7e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 689 AGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCAAAGAA 730
|||||||||||||||||||||||||||||||||||| |||||
Sbjct 589 AGAAGAAGAAATGATCAGAGCTGCCATTGAGGCCTCGAAGAA 630
> Ahg943059 jgi|Araly1|943059|scaffold_603603.1
Length=193
Score = 73.1 bits (39), Expect = 7e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 1708 TTGGAGATGGGGAAAGTGAGTCGACCTTAAACGATCTTG 1746
|||||||||||||||||||||||||||||||||||||||
Sbjct 155 TTGGAGATGGGGAAAGTGAGTCGACCTTAAACGATCTTG 193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76523302205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5