BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11750.1
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327310 jgi|Araly1|327310|fgenesh1_pm.C_scaffold_6002530 1206 0.0
Ahg943042 jgi|Araly1|943042|scaffold_603586.1 422 4e-117
Ahg931187 jgi|Araly1|931187|scaffold_303644.1 80.5 2e-14
> Ahg327310 jgi|Araly1|327310|fgenesh1_pm.C_scaffold_6002530
Length=1545
Score = 1206 bits (653), Expect = 0.0
Identities = 974/1121 (87%), Gaps = 54/1121 (5%)
Strand=Plus/Plus
Query 31 ATTCCGGATGACTTACTTTTGAACTGCTTAGCCCGAGTCTCGAGATTGTACTACCCGATT 90
||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 34 ATTCCCGATGATTTACTTTTGAACTGCTTAGCCCGCGTATCGAGATTGTACTACCCGATT 93
Query 91 CTCTCCTTGGTTTCCAAGAGATTCCGTTCTCTCGTGGCATCGCTTGAGCTTTATGAGATC 150
|||||||| ||||||||||||||||| ||||||||| |||| ||||||||||||||||||
Sbjct 94 CTCTCCTTAGTTTCCAAGAGATTCCGCTCTCTCGTGTCATCTCTTGAGCTTTATGAGATC 153
Query 151 AGAAAGCTCTTAGGACACAGGGAGAAGTGTCTTTATCTGAACTTACGTTTCAGTTCTGAA 210
||| |||||||||||||| ||||| ||||||||||||| ||||||||| |||| ||||
Sbjct 154 CGAATGCTCTTAGGACACACCGAGAATTGTCTTTATCTGAGCTTACGTTTAAGTTATGAA 213
Query 211 TCTGAGCCGCGTTGGTTCACTTTATGCCGAAGACCAACTCG-A-----AGCCCTAACCCT 264
||||| | |||||| ||||| |||||||||| |||||||| | | ||||||||||
Sbjct 214 TCTGATACACGTTGGCTCACTCTATGCCGAAGGCCAACTCGAATCCCTAACCCTAACCCT 273
Query 265 AA---T---TTCAACTCAGGATGGTTCGCTTCTTGCTTT-------AT---A-CC----- 302
|| | || |||||| |||||||| ||||||||||| || | ||
Sbjct 274 AACCCTAACTTTAACTCACGATGGTTCTCTTCTTGCTTTAGACCAGATAGAATCCTAAAG 333
Query 303 -A-CACACTATGAAGAAAGAGAAGAAGTCAAGTGACAACAATCTCATGGTCCCAGTCCCA 360
| || |||||||||||||||||||||||||||| |||||||||||||| || | |||
Sbjct 334 AATCATACTATGAAGAAAGAGAAGAAGTCAAGTG---ACAATCTCATGGTCTCA-TTCCA 389
Query 361 ACTT-CCAATTTTA-TTACTCC-TCCGTCTGAGTTGACTCGTATCACCAA-TGGTTCTAA 416
| || ||| | ||| || |||| | |||||||||||||| ||||| ||| |||||||||
Sbjct 390 AATTCCCAGTCTTAGTT-CTCCAT-CGTCTGAGTTGACTGGTATC-GCAATTGGTTCTAA 446
Query 417 TATCTATATTG-TTAG-AGTATTCACCAACGGTGCGTTCTCGTCTAGGTTCTTGTTCATG 474
|||||||| || | || | |||||| |||||||| |||||| ||||||||||| ||||||
Sbjct 447 TATCTATA-TGATGAGCA-TATTCAGCAACGGTGTGTTCTCATCTAGGTTCTTCTTCATG 504
Query 475 GACTGTCGGTCTCACACCTTGCATGAAGTTCCAAGAATGGATAAGACCAAAAAGAAACCC 534
||||||||||||||||| |||||||||| |||||| ||| ||| | || ||||||||||
Sbjct 505 GACTGTCGGTCTCACACATTGCATGAAGCTCCAAGCATGCATAGGGCCCCAAAGAAACCC 564
Query 535 TTCATGATTAGGGTTCTTGATGGGAAAATATATGTAATAGAAGGCTGCAAAAATCCCGAT 594
|| | ||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 565 -TC-CG-TTAATGTTCTTGATGGGAAAATATATGTAATCGAAGGCTGCAAAAATCCCGAT 621
Query 595 TACTCGAATTTGATCGAGCGTTTCGATCTCAAAACCCAAACATGGGAGCATGTGCCAAGC 654
|||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||
Sbjct 622 TACTCGAATTTGATCGAGTGTTTCGATCAAAAAACCTTAACATGGGAGCATGTGCCAAGC 681
Query 655 CCTAGCGCGGAGATACGTGGTAGTTATATAACAGGAAGTTTAGTCTAT-GACGGAAAGCT 713
|||||| ||| |||||||||||| ||||| |||| ||||||||| | | |||||||||||
Sbjct 682 CCTAGCTCGGCGATACGTGGTAGGTATATTACAGCAAGTTTAGT-TTTCGACGGAAAGCT 740
Query 714 TTACCTGTTTGGGGAT-AAACGTGTGGTTTACAAGCCCAAAGAAAATAAATGGGATGTGG 772
|||||||||||||||| ||| | |||||||||||||||| |||||||||||||||||||
Sbjct 741 TTACCTGTTTGGGGATAAAAAAT-TGGTTTACAAGCCCAACGAAAATAAATGGGATGTGG 799
Query 773 TAGGATTGGAGATGCCTTTACGTTGGACTCCCTCTTATATATCTTGCGTAGTAGATAACG 832
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 800 TAGGATTGGAGATGCCTTTGCGTTGGACTCCCTCTTATATATCTTGCGTAGTAGATAACG 859
Query 833 TAATCTACTCTTACGGAAG-ATCTAGAGTGCTCATGTGGTACAACACAGAGGAAAGATTG 891
||||||||| || || || ||||||| ||||| |||||||||||||||||||||||
Sbjct 860 TAATCTACTGTTTTGG-AGCATCTAGATTGCTCTTGTGGTACAACACAGAGGAAAGAACA 918
Query 892 TGGAGATATTTGAAGGGTTTGAAAAAACTTCCTAAACTACCAAAGGATTGTACTTGTGTT 951
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 919 TGGAGATATTTGAAGGGTTTGAAAAAACTTCCTAAACTACCAAAGGATTATACTCGTGTT 978
Query 952 AGACTGTTGGGTTATAGTGGAAAGGTTGTGGTTTTGTGGGAGAAGAATGTGGGTGGTGGA 1011
||| || || |||| |||||||| ||| |||||||||||| || |||| ||| ||||
Sbjct 979 AGATTGGTGAATTATGGTGGAAAGATTGCAGTTTTGTGGGAGGAGGATGTCCGTGTTGGA 1038
Query 1012 GACCCTCAGAAGAAGATGATTTGGTGTGCTGAGATTGCGCTTGAAAGGCGCAGTGCAAAC 1071
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 1039 GACCCTCAGAAGAAGATGATTTGGTGTGCTGAGATTACGCTTGAAAGGCGCAATGCACAC 1098
Query 1072 AAGATTTATGGGAAGATTGAGTGGTGTGATGTTGTGCTTAC 1112
||||||||||||||||||||||||||||| |||||||||||
Sbjct 1099 AAGATTTATGGGAAGATTGAGTGGTGTGACGTTGTGCTTAC 1139
Score = 176 bits (95), Expect = 3e-43
Identities = 190/233 (82%), Gaps = 17/233 (7%)
Strand=Plus/Plus
Query 942 TACTTGTGTTAGACT-GTTGGGTTATAG-TGGAAAGGTTGTGGTTTTGTGGGAGAAG-AA 998
||||||||||| | | | ||| || | | ||||||| ||| |||||| ||||||||| ||
Sbjct 1317 TACTTGTGTTACATTAG-TGGATTCT-GATGGAAAGATTGCGGTTTTTTGGGAGAAGAAA 1374
Query 999 -TGTG-GGTGGTGGAGACCCTCAGAAGAAGATGATTTGGTGTGCTGAGATTGCGCTTGAA 1056
|||| || | | | | | ||||||||||||||||||||||||||||| ||||||
Sbjct 1375 GTGTGCCGTCCTATCGGCTATAACAAGAAGATGATTTGGTGTGCTGAGATTGCCCTTGAA 1434
Query 1057 AGGCGCAGTGCA-AACAAGATTTATGGGAAGATTGAGTGGTGTGATGTTGTGCTTACATT 1115
||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1435 AGGCGCAATGCACAA-GAGATTTATGGGAAGATTGAGTGGTGTGATGTTGTGCTTACACT 1493
Query 1116 GCCCAGGTCATGTTCTT-TAT-TGAATTT--TGCGG-CTGT-T-ACTGTTTGA 1161
||||| |||||||| || ||| ||| ||| ||| | | || | |||||||||
Sbjct 1494 GCCCAAGTCATGTT-TTATATATGAGTTTAATGCTGTCAGTATCACTGTTTGA 1545
> Ahg943042 jgi|Araly1|943042|scaffold_603586.1
Length=1064
Score = 422 bits (228), Expect = 4e-117
Identities = 607/780 (78%), Gaps = 66/780 (8%)
Strand=Plus/Plus
Query 50 TGAACTGCTTAGCCCG-AGTCTCGAGATTGTACTACCCGATTCTCTCCTTGGTTTCCAAG 108
||||||||||||| || | || |||||||||||||||||||||||||||| |||||||||
Sbjct 23 TGAACTGCTTAGCTCGCA-TCCCGAGATTGTACTACCCGATTCTCTCCTTAGTTTCCAAG 81
Query 109 AGAT-TCCGTTCTCTCGTGGCATCGCTTGAGCTTTATGAGATCAGAAAGCTCTTAGGACA 167
|||| || | || ||| | |||||||||||||||| || ||| ||| |||||||||||
Sbjct 82 AGATATC-GCTCGCTCCTTACATCGCTTGAGCTTTACGATATCCGAACGCTCTTAGGACG 140
Query 168 CAGGGAGAAGTGTCTTTATCTGAAC-TTACGTTTCAGTTCTGAATCTGAGCCGCGTTGGT 226
|| ||||| ||||||||| | | | |||||||| |||||||||||| |||| ||||||
Sbjct 141 CACTGAGAATTGTCTTTATGT-ATCCTTACGTTTGAGTTCTGAATCTAAGCCATGTTGGT 199
Query 227 TCACTTTATGCCGAAGACCAACTCGAAGCCCTAACCCTAATT-T--C---AACTCAGGAT 280
||||||||||||||| |||||||| || ||| ||||||| | | |||||| |||
Sbjct 200 TCACTTTATGCCGAAAACCAACTCCAATCCCAAACCCTAGCCGTAACCCTAACTCACGAT 259
Query 281 GGTTCGCTTCTTGCTTTATACCACACA----C-TA-----T-G-A--AG-AAAGA-GAAG 324
||||| | ||||| |||| |||| | | | || | | | || ||||| |||
Sbjct 260 GGTTCACGTCTTGTTTTAGACCATATAAAATCCTAAAGAATCGCACTAGGAAAGAAGAAA 319
Query 325 A-A-GTCAAGTGACAACAATCTCATGGTCCCAGTCCCAACTTC-CAATTTTATTACTCCT 381
| | ||||||||| || | | | |||||| ||||||||| ||| ||| ||| ||||
Sbjct 320 ACAAGTCAAGTGA-AA-AGTTT-ATGGTCTCAGTCCCAA-TTCGCAACG--ATTG-TCCT 372
Query 382 CCGTCTGAGTTGACTCGTATC------ACCA-A-T-GGTTCTAATATCTATATTGTTAGA 432
| || || ||||||| ||| | |||| | | |||||||||||||| || | | |
Sbjct 373 CAGTTTGGGTTGACTAGTACCTTGGGTACCACAATTGGTTCTAATATCTACAT-GATCG- 430
Query 433 GTATTCAC--CAACGGTGCGTTCTCGTCTAGGTTCTTGTTCATGGACTGTCGGTCTCACA 490
| ||| | | |||||| ||||||||||| |||| || ||||||||||||||||||
Sbjct 431 GCGGCCACATCGATGGTGCGGTCTCGTCTAGGGTCTTCATCTTGGACTGTCGGTCTCACA 490
Query 491 CCTTGCATGAAGTTCCAAGAATGGATAAGACCAAAAAGAAACC-CTTCATGATTAGGGTT 549
||| ||| |||| |||||| ||| | | | || |||| || || | | | || |||
Sbjct 491 CCTGGCACGAAGCTCCAAGCATGCAGATGTCCCGAAAGTGCCCACT-CGT-A--AGTGTT 546
Query 550 CTTGATGGGAAAATATATGTAATAGAAGGCTGCAAAAATC---CCGATTACTCGAATTTG 606
|||||||| ||||||||||| | || | |||| ||| ||||| ||||||||||
Sbjct 547 CTTGATGGAAAAATATATGTCGTGGAC--C-GCAAGAATGTTGCCGATCCCTCGAATTTG 603
Query 607 ATCGAGCGTTTCGATCTCAAAACCCAAACATGGGAGCATGTGCCAAGCCCTAGCGCGGAG 666
|||||| |||||||| ||||| ||||| |||||||||||| |||| |||||||| ||||
Sbjct 604 ATCGAGTTTTTCGATCCCAAAATCCAAATATGGGAGCATGTTCCAATCCCTAGCGAGGAG 663
Query 667 ATACGTGGTAGTTATATAACAGGAAGTTTAGT-CTATGACGGAAAGCTTTACCTGTTTGG 725
||||||| |||||||||||| |||||||||| || || || ||| ||||||||||||||
Sbjct 664 TTACGTGGGAGTTATATAACAAGAAGTTTAGTTCT-TGGCGAAAAACTTTACCTGTTTGG 722
Query 726 GGATAAACGTGTGGTTTACAAGCCCAAAGAAAATAA-ATGGGATGTGGTAGGATTGGAGA 784
| ||||| || |||||||||||| |||||| | || ||||||||| |||||||||||||
Sbjct 723 GTATAAAAGTACGGTTTACAAGCCTAAAGAACA-AATATGGGATGTAGTAGGATTGGAGA 781
> Ahg931187 jgi|Araly1|931187|scaffold_303644.1
Length=446
Score = 80.5 bits (43), Expect = 2e-14
Identities = 54/59 (92%), Gaps = 2/59 (3%)
Strand=Plus/Plus
Query 52 AACTGCTTAGCCCGA-GTCTCGAGATTGTACTACCCGATTCTCTCCTTGGTTTCCAAGA 109
||||||||||||| | || ||||||||||||||||||||||||||||| |||||| |||
Sbjct 79 AACTGCTTAGCCC-ACGTTTCGAGATTGTACTACCCGATTCTCTCCTTAGTTTCCCAGA 136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43307633712
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5