BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11760.1
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895373 jgi|Araly1|895373|Al_scaffold_0006_3369 429 1e-119
Ahg949382 jgi|Araly1|949382|scaffold_801269.1 370 7e-102
Ahg943043 jgi|Araly1|943043|scaffold_603587.1 191 6e-48
Ahg327291 jgi|Araly1|327291|fgenesh1_pm.C_scaffold_6002511 128 5e-29
> Ahg895373 jgi|Araly1|895373|Al_scaffold_0006_3369
Length=294
Score = 429 bits (232), Expect = 1e-119
Identities = 274/294 (93%), Gaps = 3/294 (1%)
Strand=Plus/Plus
Query 11 ATGAAGAAACCCAGTCAACTATCGGCCACCATTCTAACTATCTTTGTGATCCTTGCTATA 70
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGAAGAAACCCAGTCAACTATCGACCACCATTCTAACTATCTTCGTGATCCTTGCTATA 60
Query 71 GGGGTGATGGTGAAGGAAACATTGGGACAAGCGCCGAGTACTTGTTTTGAAGCTCTAAAA 130
||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||
Sbjct 61 GGGGTGATGGTGAAGGAAACACTGGGACAGGCACCGAGGACTTGTTTTGAAGCTCTAAAA 120
Query 131 GATGCTTCTAAGGGTGCAT---CATGTGACTCGGAATTGTGTGCCTCTCTATGTAAGAAG 187
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATGCTTCTAAAGGTGCATCAACATGTGACTCGGAATTGTGTGCCTCTCTATGTAAGAAG 180
Query 188 AAATCCGGCGGCGGTGTTGGTACTTGTAGAACAAAGACGACACAACCCAGTAAAGGACAA 247
||||| | || ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 AAATCTGCCGACGGTGTTGGTACTTGCAGAACAAAGACGACACAACCCAGTAAAGGACAA 240
Query 248 CCAGAATGCCACTGCAGGTTTTGGTGTAAATCAGATGGAACCCCCTACAAGTAG 301
||||||||||||||||| ||||||||| ||||||||||| || |||||||||
Sbjct 241 CCAGAATGCCACTGCAGATTTTGGTGTCGATCAGATGGAAGTCCGTACAAGTAG 294
> Ahg949382 jgi|Araly1|949382|scaffold_801269.1
Length=268
Score = 370 bits (200), Expect = 7e-102
Identities = 239/257 (93%), Gaps = 5/257 (2%)
Strand=Plus/Plus
Query 69 TAGGGGTGATGGTGAAGGAAACATTGGGACAAGCGCCG-AGTACTTGTTTTGAAGCTCTA 127
||||||||||||||||||||||| ||||||| |||||| || ||||||||||||||||||
Sbjct 13 TAGGGGTGATGGTGAAGGAAACACTGGGACAGGCGCCGAAG-ACTTGTTTTGAAGCTCTA 71
Query 128 AAAGATGCTTCTAAGGGTGCAT---CATGTGACTCGGAATTGTGTGCCTCTCTATGTAAG 184
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 72 AAAGATGCTTCTAAAGGTGCATCAACATGTGACTCGGAATTGTGTGCCTCTCTATGTAAG 131
Query 185 AAGAAATCCGGCGGCGGTGTTGGTACTTGTAGAACAAAGACGACACAACCCAGTAAAGGA 244
|||||||| | || ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 132 AAGAAATCTGCCGACGGTGTTGGTACTTGCAGAACAAAGACGACACAACCCAGTAAAGGA 191
Query 245 CAACCAGAATGCCACTGCAGGTTTTGGTGTAAATCAGATGGAACCCCCTACAAGTAGAAT 304
|||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||||
Sbjct 192 CAACCAGAATGCCACTGCAGATTTTGGTGTCGATCAGATGGAAGTCCGTACAAGTAGAAT 251
Query 305 TTTCAGACCATCAATTT 321
|||||||||||||||||
Sbjct 252 TTTCAGACCATCAATTT 268
> Ahg943043 jgi|Araly1|943043|scaffold_603587.1
Length=328
Score = 191 bits (103), Expect = 6e-48
Identities = 156/182 (86%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 1 AGCATACAAGATGAAGAAACCCAGTCAACTATCGGCCACCATTCTAACTATCTTTGTGAT 60
||||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 14 AGCATACGAGATGAAGAAACCCAGTCAACTATCGGCCACCATTCTTACCATCTTCACCAT 73
Query 61 CCTTGCTATAGGGGTGATGGTGAAGGAAACATTGGGACAAGCGCCG-AGTACTTGTTTTG 119
||||||||||||||||||||||||||||||| | ||||| ||||| | || |||| |||
Sbjct 74 CCTTGCTATAGGGGTGATGGTGAAGGAAACAGTAGGACAGGCGCCACA-TAATTGTGTTG 132
Query 120 AAGCTCTAAAAGATGCTTCTAAGGGTGCATCATGTGACTCGGAATTGTGTGCCTCTCTAT 179
|| ||| ||||| ||||| ||||||||| |||| ||| | ||||||||||||||| ||
Sbjct 133 AAATTCTTAAAGAAGCTTCAAAGGGTGCAACATGCGACGCCAAATTGTGTGCCTCTCAAT 192
Query 180 GT 181
||
Sbjct 193 GT 194
> Ahg327291 jgi|Araly1|327291|fgenesh1_pm.C_scaffold_6002511
Length=309
Score = 128 bits (69), Expect = 5e-29
Identities = 158/197 (80%), Gaps = 21/197 (11%)
Strand=Plus/Plus
Query 11 ATGAAGAAACCCAGTCAACTATCGGCCACCATTCTAACTATCTTTGTGATCCTTGCTATA 70
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAAGAAACCCAGTCAACTATCGGCCACCATTCTAACTATCTTCACCATCCTTGCTATA 60
Query 71 GGGGTGATGGTG-AAGGAAACATTGGGACAAGCGCCGAGTACTTGTTTTGAAGCTCTAA- 128
|||||||||||| ||| ||||| ||||| || | || || | || || ||| |||||
Sbjct 61 GGGGTGATGGTGGAAG-AAACACTGGGAAAA-CAACGTTTA-T-GTCTTAAAGTTCTAAC 116
Query 129 AAGATGCTTC---T--A---AGGG-TGCATCA---TGTGACTCGGAATTGTGTGCCTCTC 176
|| ||||||| | | | || | ||||| ||||||||| |||||||| | ||||
Sbjct 117 AA-ATGCTTCACATGTATCTAAGGATACATCAACATGTGACTCGAAATTGTGTACTTCTC 175
Query 177 TATGT-AAGAAGAAATC 192
||||| || ||||||||
Sbjct 176 TATGTGAA-AAGAAATC 191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22378152279
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5