BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11760.1 Length=612 Score E Sequences producing significant alignments: (Bits) Value Ahg895373 jgi|Araly1|895373|Al_scaffold_0006_3369 429 1e-119 Ahg949382 jgi|Araly1|949382|scaffold_801269.1 370 7e-102 Ahg943043 jgi|Araly1|943043|scaffold_603587.1 191 6e-48 Ahg327291 jgi|Araly1|327291|fgenesh1_pm.C_scaffold_6002511 128 5e-29 > Ahg895373 jgi|Araly1|895373|Al_scaffold_0006_3369 Length=294 Score = 429 bits (232), Expect = 1e-119 Identities = 274/294 (93%), Gaps = 3/294 (1%) Strand=Plus/Plus Query 11 ATGAAGAAACCCAGTCAACTATCGGCCACCATTCTAACTATCTTTGTGATCCTTGCTATA 70 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGAAGAAACCCAGTCAACTATCGACCACCATTCTAACTATCTTCGTGATCCTTGCTATA 60 Query 71 GGGGTGATGGTGAAGGAAACATTGGGACAAGCGCCGAGTACTTGTTTTGAAGCTCTAAAA 130 ||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||| Sbjct 61 GGGGTGATGGTGAAGGAAACACTGGGACAGGCACCGAGGACTTGTTTTGAAGCTCTAAAA 120 Query 131 GATGCTTCTAAGGGTGCAT---CATGTGACTCGGAATTGTGTGCCTCTCTATGTAAGAAG 187 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 121 GATGCTTCTAAAGGTGCATCAACATGTGACTCGGAATTGTGTGCCTCTCTATGTAAGAAG 180 Query 188 AAATCCGGCGGCGGTGTTGGTACTTGTAGAACAAAGACGACACAACCCAGTAAAGGACAA 247 ||||| | || ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 181 AAATCTGCCGACGGTGTTGGTACTTGCAGAACAAAGACGACACAACCCAGTAAAGGACAA 240 Query 248 CCAGAATGCCACTGCAGGTTTTGGTGTAAATCAGATGGAACCCCCTACAAGTAG 301 ||||||||||||||||| ||||||||| ||||||||||| || ||||||||| Sbjct 241 CCAGAATGCCACTGCAGATTTTGGTGTCGATCAGATGGAAGTCCGTACAAGTAG 294 > Ahg949382 jgi|Araly1|949382|scaffold_801269.1 Length=268 Score = 370 bits (200), Expect = 7e-102 Identities = 239/257 (93%), Gaps = 5/257 (2%) Strand=Plus/Plus Query 69 TAGGGGTGATGGTGAAGGAAACATTGGGACAAGCGCCG-AGTACTTGTTTTGAAGCTCTA 127 ||||||||||||||||||||||| ||||||| |||||| || |||||||||||||||||| Sbjct 13 TAGGGGTGATGGTGAAGGAAACACTGGGACAGGCGCCGAAG-ACTTGTTTTGAAGCTCTA 71 Query 128 AAAGATGCTTCTAAGGGTGCAT---CATGTGACTCGGAATTGTGTGCCTCTCTATGTAAG 184 |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 72 AAAGATGCTTCTAAAGGTGCATCAACATGTGACTCGGAATTGTGTGCCTCTCTATGTAAG 131 Query 185 AAGAAATCCGGCGGCGGTGTTGGTACTTGTAGAACAAAGACGACACAACCCAGTAAAGGA 244 |||||||| | || ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 132 AAGAAATCTGCCGACGGTGTTGGTACTTGCAGAACAAAGACGACACAACCCAGTAAAGGA 191 Query 245 CAACCAGAATGCCACTGCAGGTTTTGGTGTAAATCAGATGGAACCCCCTACAAGTAGAAT 304 |||||||||||||||||||| ||||||||| ||||||||||| || |||||||||||| Sbjct 192 CAACCAGAATGCCACTGCAGATTTTGGTGTCGATCAGATGGAAGTCCGTACAAGTAGAAT 251 Query 305 TTTCAGACCATCAATTT 321 ||||||||||||||||| Sbjct 252 TTTCAGACCATCAATTT 268 > Ahg943043 jgi|Araly1|943043|scaffold_603587.1 Length=328 Score = 191 bits (103), Expect = 6e-48 Identities = 156/182 (86%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 1 AGCATACAAGATGAAGAAACCCAGTCAACTATCGGCCACCATTCTAACTATCTTTGTGAT 60 ||||||| ||||||||||||||||||||||||||||||||||||| || ||||| || Sbjct 14 AGCATACGAGATGAAGAAACCCAGTCAACTATCGGCCACCATTCTTACCATCTTCACCAT 73 Query 61 CCTTGCTATAGGGGTGATGGTGAAGGAAACATTGGGACAAGCGCCG-AGTACTTGTTTTG 119 ||||||||||||||||||||||||||||||| | ||||| ||||| | || |||| ||| Sbjct 74 CCTTGCTATAGGGGTGATGGTGAAGGAAACAGTAGGACAGGCGCCACA-TAATTGTGTTG 132 Query 120 AAGCTCTAAAAGATGCTTCTAAGGGTGCATCATGTGACTCGGAATTGTGTGCCTCTCTAT 179 || ||| ||||| ||||| ||||||||| |||| ||| | ||||||||||||||| || Sbjct 133 AAATTCTTAAAGAAGCTTCAAAGGGTGCAACATGCGACGCCAAATTGTGTGCCTCTCAAT 192 Query 180 GT 181 || Sbjct 193 GT 194 > Ahg327291 jgi|Araly1|327291|fgenesh1_pm.C_scaffold_6002511 Length=309 Score = 128 bits (69), Expect = 5e-29 Identities = 158/197 (80%), Gaps = 21/197 (11%) Strand=Plus/Plus Query 11 ATGAAGAAACCCAGTCAACTATCGGCCACCATTCTAACTATCTTTGTGATCCTTGCTATA 70 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGAAGAAACCCAGTCAACTATCGGCCACCATTCTAACTATCTTCACCATCCTTGCTATA 60 Query 71 GGGGTGATGGTG-AAGGAAACATTGGGACAAGCGCCGAGTACTTGTTTTGAAGCTCTAA- 128 |||||||||||| ||| ||||| ||||| || | || || | || || ||| ||||| Sbjct 61 GGGGTGATGGTGGAAG-AAACACTGGGAAAA-CAACGTTTA-T-GTCTTAAAGTTCTAAC 116 Query 129 AAGATGCTTC---T--A---AGGG-TGCATCA---TGTGACTCGGAATTGTGTGCCTCTC 176 || ||||||| | | | || | ||||| ||||||||| |||||||| | |||| Sbjct 117 AA-ATGCTTCACATGTATCTAAGGATACATCAACATGTGACTCGAAATTGTGTACTTCTC 175 Query 177 TATGT-AAGAAGAAATC 192 ||||| || |||||||| Sbjct 176 TATGTGAA-AAGAAATC 191 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22378152279 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5