BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11770.1
Length=1191
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327310 jgi|Araly1|327310|fgenesh1_pm.C_scaffold_6002530 765 0.0
Ahg943042 jgi|Araly1|943042|scaffold_603586.1 632 2e-180
Ahg943045 jgi|Araly1|943045|scaffold_603589.1 248 7e-65
Ahg354756 jgi|Araly1|354756|fgenesh1_pg.C_scaffold_7001929 215 7e-55
Ahg333104 jgi|Araly1|333104|fgenesh1_pm.C_scaffold_34000003 93.5 3e-18
Ahg931187 jgi|Araly1|931187|scaffold_303644.1 91.6 1e-17
> Ahg327310 jgi|Araly1|327310|fgenesh1_pm.C_scaffold_6002530
Length=1545
Score = 765 bits (414), Expect = 0.0
Identities = 929/1166 (80%), Gaps = 82/1166 (7%)
Strand=Plus/Plus
Query 30 TAATATGCCTTACCTTCCTGATGATTTACTATTAAACAT-CTTAGGCCGTGTCTCGAGAT 88
|||||| || ||| |||| ||||||||||| || ||| | ||||| ||| || |||||||
Sbjct 21 TAATATACCATACATTCCCGATGATTTACTTTTGAAC-TGCTTAGCCCGCGTATCGAGAT 79
Query 89 TGTACTACCCGATTCTCTCCTTAGTTTCCAAGAGATTCCGCTCTCTCGT-TGGATCACTT 147
||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 80 TGTACTACCCGATTCTCTCCTTAGTTTCCAAGAGATTCCGCTCTCTCGTGTC-ATCTCTT 138
Query 148 GAGCTTTACAAGATCCGAACGCTCCTAGGACGACGCACTGAGAATTGTCTTTATCTGAGC 207
|||||||| ||||||||| |||| |||||| || | | |||||||||||||||||||||
Sbjct 139 GAGCTTTATGAGATCCGAATGCTCTTAGGAC-ACAC-C-GAGAATTGTCTTTATCTGAGC 195
Query 208 TTACGTTTCAGTTATGGATCTAACCCACGTTGGTTCACTCTATGCCGAAGACCAACTCGA 267
|||||||| ||||||| |||| | |||||||| |||||||||||||||| |||||||||
Sbjct 196 TTACGTTTAAGTTATGAATCTGATACACGTTGGCTCACTCTATGCCGAAGGCCAACTCGA 255
Query 268 ACCCCTAGCCCTGAACC-TAACC-T---T--AAGTCACGATGGTTCACATCCTGCTTTAG 320
| ||||| |||| |||| ||||| | | || |||||||||||| | || ||||||||
Sbjct 256 ATCCCTAACCCT-AACCCTAACCCTAACTTTAACTCACGATGGTTCTCTTCTTGCTTTAG 314
Query 321 ACCA-AT-----CCTAACA-AATCTCACTAGGGCCACTAGCAAGGAAGAAAAGAAGTTAA 373
|||| || ||||| | |||| | || | | | | ||| |||| ||||||| ||
Sbjct 315 ACCAGATAGAATCCTAA-AGAATC--A-TA---CTA-T-G-AAGAAAGAGAAGAAGTCAA 364
Query 374 GTGAAAATCTTATGGTCTCAATCCCGACTAGCAATG--A-TTGTCC-TCTGTCTG-GCTT 428
|||| ||||| ||||||||| ||| | | || | | || ||| || ||||| | ||
Sbjct 365 GTGACAATCTCATGGTCTCATTCCAAATTCCCAGTCTTAGTTCTCCATC-GTCTGAG-TT 422
Query 429 GACTTGTAACACAATTGGTTCTTATATCTACATGATTGGGGGATA--CATAAATGGTGTG 486
|||| ||| | ||||||||||| ||||||| ||||| | | ||| || || ||||||
Sbjct 423 GACTGGTATCGCAATTGGTTCTAATATCTATATGAT-GAGC-ATATTCAGCAACGGTGTG 480
Query 487 CTCTCATCTAGGGTCTTCTTCTTGGATTGTCGGTCTCACACCTGGCATGAAGCTCCAAGC 546
||||||||||| |||||||| |||| |||||||||||||| | ||||||||||||||||
Sbjct 481 TTCTCATCTAGGTTCTTCTTCATGGACTGTCGGTCTCACACATTGCATGAAGCTCCAAGC 540
Query 547 ATGCAGGTAG--CCCGAAAGTCCCCACTC-GTGAATGTTCTTGATGGGAAAATATATGTA 603
||||| ||| ||| |||| || ||| || |||||||||||||||||||||||||||
Sbjct 541 ATGCA--TAGGGCCCCAAAGAAACC-CTCCGTTAATGTTCTTGATGGGAAAATATATGTA 597
Query 604 GTGGAAGGCTGGAGAGGTTCCGATTACTCGAATCTCATCGAGAT-TTTCGATCCCAAAAC 662
| |||||||| | | | |||||||||||||| | |||||| | |||||||| |||||
Sbjct 598 ATCGAAGGCTGCAAAAATCCCGATTACTCGAATTTGATCGAG-TGTTTCGATCAAAAAAC 656
Query 663 CCAAAAATGGGAACATGTGCCAAGCCCTAGCGCGGAGATGCGTGGGAGGTATAT-ATCAA 721
| || |||||| |||||||||||||||||| ||| ||| ||||| |||||||| | ||
Sbjct 657 CTTAACATGGGAGCATGTGCCAAGCCCTAGCTCGGCGATACGTGGTAGGTATATTA-CAG 715
Query 722 -AAGGTTTAGTCTAT-GAAGAAAAACTTTACCTGTTTGGGGATAAAAA-TGTGGTTTACA 778
||| |||||| | | || | ||| ||||||||||||||||||||||| | |||||||||
Sbjct 716 CAAG-TTTAGTTT-TCGACGGAAAGCTTTACCTGTTTGGGGATAAAAAAT-TGGTTTACA 772
Query 779 AGCCTAAGGAAAGTAGATGGGATGCGTTAGGGTTTGATATGAATTTGTGGTTGGT-TAGC 837
|||| || |||| || |||||||| | |||| || || ||| |||| | |||| | |
Sbjct 773 AGCCCAACGAAAATAAATGGGATGTGGTAGGATTGGAGATGCCTTTGCG-TTGGACTCCC 831
Query 838 TATGGT-TCTTCTTGCGT-GATAGATAATGTA-TGT--TATAT-GGTATTTTATAAAA-G 890
| | | | | ||||||| | ||||||| ||| | | | | | || | | || | |
Sbjct 832 TCTTATATAT-CTTGCGTAG-TAGATAACGTAATCTACTGTTTTGG-AGCATCTAGATTG 888
Query 891 ACTCATATGGTACGACTCCGAGGTAAGAT-ATTGGAGAGT-TTTGAAGGGTTTGGAAAAA 948
||| | |||||| || | |||| |||| || ||||| | ||||||||||||| |||||
Sbjct 889 -CTCTTGTGGTACAACACAGAGGAAAGAACAT-GGAGA-TATTTGAAGGGTTTGAAAAAA 945
Query 949 -TTACCTAAATTACGACATCG-TCGTTCTTGTATTAGAATGGTGGATTATGGTGGAAAGA 1006
|| |||||| ||| | | | | | || || ||||| ||||| |||||||||||||||
Sbjct 946 CTT-CCTAAACTACCAAAG-GATTATACTCGTGTTAGATTGGTGAATTATGGTGGAAAGA 1003
Query 1007 TTGC-GATTCTGTGGGAGAAGAAAGTGCGTGTTGTCGGCTCTGACAAGAAAATGATTTGG 1065
|||| | || |||||||| || | || ||||||| | | || | ||||| |||||||||
Sbjct 1004 TTGCAGTTT-TGTGGGAGGAGGATGTCCGTGTTGGAGACCCTCAGAAGAAGATGATTTGG 1062
Query 1066 TGTACTGAGATTGCGCTTGAAAGGCGCAGTGCACACAAGATTTATGGGAAGATTGAGTGG 1125
||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1063 TGTGCTGAGATTACGCTTGAAAGGCGCAATGCACACAAGATTTATGGGAAGATTGAGTGG 1122
Query 1126 TGTGATGTTGTGCTTACAGTGCCCAA 1151
||||| ||||||||||| || |||||
Sbjct 1123 TGTGACGTTGTGCTTACTGTCCCCAA 1148
Score = 250 bits (135), Expect = 2e-65
Identities = 221/261 (85%), Gaps = 12/261 (5%)
Strand=Plus/Plus
Query 930 TTTGAAGGGTTTGGAAAAATTACCTAAATTACGAC-ATCGTC-GTT-CTTGTATTAGAAT 986
|||||||||||||||| | ||||| |||||| | || ||| ||| ||||| ||| | |
Sbjct 1272 TTTGAAGGGTTTGGAAGTACTACCTGAATTACCTCTATTGTCAGTTACTTGTGTTACATT 1331
Query 987 GGTGGATTATGGTGGAAAGATTGCGATTCTGTGGGAGAAGAAA--GTG-CGTGTTGTCGG 1043
||||||| || ||||||||||||| || | |||||||||||| ||| ||| | ||||
Sbjct 1332 AGTGGATTCTGATGGAAAGATTGCGGTTTTTTGGGAGAAGAAAGTGTGCCGTCCTATCGG 1391
Query 1044 CTCTGACAAGAAAATGATTTGGTGTACTGAGATTGCGCTTGAAAGGCGCAGTGCACACA- 1102
|| | ||||||| |||||||||||| |||||||||| ||||||||||||| |||||| |
Sbjct 1392 CTATAACAAGAAGATGATTTGGTGTGCTGAGATTGCCCTTGAAAGGCGCAATGCACA-AG 1450
Query 1103 AGATTTATGGGAAGATTGAGTGGTGTGATGTTGTGCTTACAGTGCCCAAGTCATGTTCTT 1162
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1451 AGATTTATGGGAAGATTGAGTGGTGTGATGTTGTGCTTACACTGCCCAAGTCATGTT-TT 1509
Query 1163 -TAT-TGGAATTTATTGCTGT 1181
||| || | |||| ||||||
Sbjct 1510 ATATATG-AGTTTAATGCTGT 1529
> Ahg943042 jgi|Araly1|943042|scaffold_603586.1
Length=1064
Score = 632 bits (342), Expect = 2e-180
Identities = 657/804 (82%), Gaps = 41/804 (5%)
Strand=Plus/Plus
Query 83 CGAGATTGTACTACCCGATTCTCTCCTTAGTTTCCAAGAGAT-TCCGCTCTCTCGTTGGA 141
|||||||||||||||||||||||||||||||||||||||||| || |||| ||| || |
Sbjct 44 CGAGATTGTACTACCCGATTCTCTCCTTAGTTTCCAAGAGATATC-GCTCGCTCCTTACA 102
Query 142 TCACTTGAGCTTTACAAGATCCGAACGCTCCTAGGACGACGCACTGAGAATTGTCTTTAT 201
|| |||||||||||| | |||||||||||| ||||||| | ||||||||||||||||||
Sbjct 103 TCGCTTGAGCTTTACGATATCCGAACGCTCTTAGGACG-C--ACTGAGAATTGTCTTTAT 159
Query 202 CTGAGC-TTACGTTTCAGTTATGGATCTAACCCACGTTGGTTCACTCTATGCCGAAGACC 260
| | | |||||||| |||| || |||||| ||| ||||||||||| ||||||||| |||
Sbjct 160 GT-ATCCTTACGTTTGAGTTCTGAATCTAAGCCATGTTGGTTCACTTTATGCCGAAAACC 218
Query 261 AACTCGAACCCCTAGCCCTGAACC-TAACCTTAAGTCACGATGGTTCACATCCTGCTTTA 319
||||| || ||| | |||| | || ||||| ||| |||||||||||||| || || ||||
Sbjct 219 AACTCCAATCCCAAACCCT-AGCCGTAACCCTAACTCACGATGGTTCACGTCTTGTTTTA 277
Query 320 GACCAATCCTAACAAATC-TCACTAGG-GCCACTAGCAAGGAAGAAAAGAAGTTAAGTGA 377
||||| | ||| || || | | | || ||||| || |||||||| |||| ||||||
Sbjct 278 GACCA-TA-TAA-AA-TCCTAAAGAATCGC-ACTAGGAAAGAAGAAAACAAGTCAAGTGA 332
Query 378 AAA-TCTTATGGTCTCAATCCCGACTAGCAATGATTGTCCTCTGTCTGGCTTGACTTGTA 436
||| | ||||||||||| |||| | | |||| |||||||||| || ||| |||||| |||
Sbjct 333 AAAGT-TTATGGTCTCAGTCCCAATTCGCAACGATTGTCCTCAGTTTGGGTTGACTAGTA 391
Query 437 --------AC-ACAATTGGTTCTTATATCTACATGATTGGGGGATACATAAATGGTGTGC 487
|| |||||||||||| ||||||||||||| || || |||| |||||| |
Sbjct 392 CCTTGGGTACCACAATTGGTTCTAATATCTACATGATCGGCGGCCACATCGATGGTGCGG 451
Query 488 TCTCATCTAGGGTCTTCTTCTTGGATTGTCGGTCTCACACCTGGCATGAAGCTCCAAGCA 547
|||| |||||||||||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct 452 TCTCGTCTAGGGTCTTCATCTTGGACTGTCGGTCTCACACCTGGCACGAAGCTCCAAGCA 511
Query 548 TGCAGGTAG-CCCGAAAGTCCCCACTCGTGAA-TGTTCTTGATGGGAAAATATATGTAGT 605
||||| | | ||||||||| ||||||||| || |||||||||||| ||||||||||| ||
Sbjct 512 TGCAGAT-GTCCCGAAAGTGCCCACTCGT-AAGTGTTCTTGATGGAAAAATATATGTCGT 569
Query 606 GGAAGGCTGGAGAGGTT-CCGATTACTCGAATCTCATCGAGATTTTCGATCCCAAAACCC 664
||| || || | ||| ||||| ||||||| | |||||| ||||||||||||||| ||
Sbjct 570 GGACCGCAAGA-ATGTTGCCGATCCCTCGAATTTGATCGAGTTTTTCGATCCCAAAATCC 628
Query 665 AAAAATGGGAACATGTGCCAAGCCCTAGCGCGGAGATGCGTGGGAGGTATATATCAA-AA 723
||| |||||| ||||| |||| |||||||| |||| | |||||||| |||||| ||| ||
Sbjct 629 AAATATGGGAGCATGTTCCAATCCCTAGCGAGGAGTTACGTGGGAGTTATATAACAAGAA 688
Query 724 GGTTTAGT-CTATGAAGAAAAACTTTACCTGTTTGGGGATAAAAATGTGGTTTACAAGCC 782
| |||||| || || ||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 689 G-TTTAGTTCT-TGGCGAAAAACTTTACCTGTTTGGGTATAAAAGTACGGTTTACAAGCC 746
Query 783 TAAGGAA-AGTAGATGGGATGC-GTTAGGGTTTGATATGAATTTGTGGTTGGTTAGCTAT 840
||| ||| | | |||||||| || ||| || || | | |||| | | |||| || ||
Sbjct 747 TAAAGAACAA-ATATGGGATGTAGT-AGGATTGGAGAAGTGTTTGCGCTGGGTTCGCAAT 804
Query 841 GGTTCTTCTTGCGTGATAGATAAT 864
||||||||||||||||||||||
Sbjct 805 TCTTCTTCTTGCGTGATAGATAAT 828
> Ahg943045 jgi|Araly1|943045|scaffold_603589.1
Length=320
Score = 248 bits (134), Expect = 7e-65
Identities = 210/245 (86%), Gaps = 11/245 (4%)
Strand=Plus/Plus
Query 1 ATGATGAACGGCATAA-AGTCTTCACCGTGTAATATGCCTTACCTTCCTGATGATTTACT 59
|||| |||||||| || |||||||| ||| |||||||||||||||||| |||||| ||||
Sbjct 21 ATGACGAACGGCA-AAGAGTCTTCAACGTTTAATATGCCTTACCTTCCAGATGATATACT 79
Query 60 ATTAAACAT-CTTAGGC-CGTGTCTCGAGATTGTACTACCCGATTCTCTCCTTAGTTTCC 117
|| || | |||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 80 GTTGCAC-TGCTTA-GCTCGTGTCTCGAGATTGTACTACCCAATTCTCTCCTTAGTTTCC 137
Query 118 AAGAGATTCCGCTCTCTCGTTGGATCACTTGAGCTTTACAAGATCCGAAC-GCTCCTAGG 176
|||||||||||||||||||||| ||||||||||||| || | ||||||| | || ||||
Sbjct 138 AAGAGATTCCGCTCTCTCGTTGCATCACTTGAGCTTCACGACATCCGAATAG-TCTTAGG 196
Query 177 ACGACGCACTGAGAATTGTCTTTATCTGAGCTTACGTTTCAGTTATGGATCTAACCCACG 236
||| | | | ||||||||||||||| || ||||| |||||||| || |||||| ||| |
Sbjct 197 ACG-CAC-C-GAGAATTGTCTTTATATGTGCTTATATTTCAGTTCTGAATCTAAGCCATG 253
Query 237 TTGGT 241
|||||
Sbjct 254 TTGGT 258
> Ahg354756 jgi|Araly1|354756|fgenesh1_pg.C_scaffold_7001929
Length=1116
Score = 215 bits (116), Expect = 7e-55
Identities = 213/259 (82%), Gaps = 10/259 (4%)
Strand=Plus/Plus
Query 455 TCTACATGATTGGGGGATACATAAATGGTGTGCTC-TCATCTAGGGTCTTCTTCTTGGAT 513
||||||| ||||| |||||||| || |||| || | || |||||||| ||| || ||||
Sbjct 413 TCTACATTATTGGCGGATACATCAACGGTGAGC-CATCGTCTAGGGTATTCGTCATGGAC 471
Query 514 TGTCGGTCTCACACCTGGCATGAAGCTCCAAGCATGCAGGTAGC-CCGAAAGTCCCCACT 572
|||||||||||||||||||| |||||||||||||||| ||| || | ||| ||||| ||
Sbjct 472 TGTCGGTCTCACACCTGGCACGAAGCTCCAAGCATGCGGGTGGCTCGGAATTTCCCC-CT 530
Query 573 CGTGAATGTTCTTGATGGGAAAATATATGTAGTGGAAGGCTG-GAGAGGTTCCGATTACT 631
||||| || | ||||||||||||||||||||||||||||||| || | || | || ||
Sbjct 531 CGTGAGTGCTGTTGATGGGAAAATATATGTAGTGGAAGGCTGCGACAA-TTGCAATCCCT 589
Query 632 C-GAATCTCATCGAGATTTTCGATCCCAAAACCCAAAAATGGGAACATGTGCCAAGCCCT 690
| |||| | || ||| ||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 590 CAGAATTT-ATGGAGTTTTTCGATCCCAAAACCCAGATGTGGGAGCATGTGCCAAGCCC- 647
Query 691 AGC-GCGGAGATGCGTGGG 708
|| || ||||| || |||
Sbjct 648 AGGAGCAGAGATACGCGGG 666
Score = 154 bits (83), Expect = 1e-36
Identities = 211/270 (78%), Gaps = 19/270 (7%)
Strand=Plus/Plus
Query 18 GTCTTCACC-GTGTAATATGCCTTACCTTCCTGATGATTTACTATTAAACAT-CTTAGGC 75
||| ||||| || |||||| || || || ||||||||| ||||||| ||| | ||||| |
Sbjct 24 GTCGTCACCGGT-TAATATTCCATATCTCCCTGATGATATACTATTGAAC-TGCTTAGCC 81
Query 76 CGTGTCTCGAGATTGTACTACCCGATTCTCTCCTTAGTTTCCAAGAGATTCCGCTCTCTC 135
|| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 82 CGCGTCTCAAGATTGTACTACCCAACTCTCTCCTTAGTTTCCAAGAGATTCCGCTCTCTC 141
Query 136 GTTGGATC-ACTTGAGCTTTACAAGATCCGAACGCTCCTAGGACGACGCACTGAGAATTG 194
| | || || ||||||||| ||| ||||| ||| |||| | | |||| |||| |||
Sbjct 142 CTCGCTTCGACA-GAGCTTTACGAGACCCGAAGGCTATTAGG-C-A-GCACCGAGAGTTG 197
Query 195 TCTTTATCTGAGCTTAC-GTTTCA-GTTATGGATCTAACCCACGTTGGTTCACTCT-ATG 251
|| ||| | |||| ||| | | | | ||||| ||||||||||| ||||| | |
Sbjct 198 TCCCTATGTCTCCTTAATGTTCCCTGGCA-GC-TCTAAGCCACGTTGGTTTACTCTGA-G 254
Query 252 CCGAAG-ACCAACTCGAA-CCCCTAGCCCT 279
||| | ||||||||||| |||| | ||||
Sbjct 255 CCGT-GTACCAACTCGAATCCCCAA-CCCT 282
Score = 137 bits (74), Expect = 1e-31
Identities = 200/260 (77%), Gaps = 11/260 (4%)
Strand=Plus/Plus
Query 939 TTTGGAAAAATTACCTAAATTACGACATCGTCGTTCTTGTATTAGAATGGTGGATTATGG 998
|||||| ||| | |||||||||| | | || | | || |||| ||| | ||| |||
Sbjct 861 TTTGGAGAAACTGCCTAAATTACCAAAGGGTTATGGTCGTGTTAGGTTGGAGAATTGTGG 920
Query 999 TGGAAAGATTGCGATTCTGTGGGAGAAGAAAGTGCGTGTTGTCGGCTCTGA-CAAG-A-A 1055
|||||| ||| | || | |||||| |||| || |||| | | || ||| | |||| | |
Sbjct 921 TGGAAATATTTTGGTTTTTTGGGAGGAGAATGTCCGTGCTATTGGTTCT-ACCAAGAAGA 979
Query 1056 A-ATGATTTGGTGTACTGAGATTGCGCTTGAAAGGCGCAGTGCACACA--AGATTTATGG 1112
| |||||||||||| |||| ||||| ||||||| || | || | | || |||||||
Sbjct 980 AGATGATTTGGTGTGTTGAGGTTGCGATTGAAAGACG-A-AACAGAGATGAGGTTTATGG 1037
Query 1113 GAAGATTGAGTGGTGTGATGTTGTGCTTACAGTGCCCAAGTCATGTTCTTTATT-GGAAT 1171
|||| |||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 1038 GAAGGTTGAGTGGTGTGATGTTGTGCTTACAGTCCCCAAGTCATGTTCTTT-TGAGGAAT 1096
Query 1172 TTATTGCTGTTACTATTTGA 1191
|| ||| || ||| |||||
Sbjct 1097 TTGTTGTTGCCACTGTTTGA 1116
> Ahg333104 jgi|Araly1|333104|fgenesh1_pm.C_scaffold_34000003
Length=1119
Score = 93.5 bits (50), Expect = 3e-18
Identities = 150/195 (77%), Gaps = 19/195 (10%)
Strand=Plus/Plus
Query 85 AGATTGTACTACCCGATTCTCTCCTTAGTTTCCAAGAGAT-TCCGCTCTCTCGTTGGATC 143
||||||||||||||||||||||||||||| |||||||| | || | | ||||||| ||
Sbjct 103 AGATTGTACTACCCGATTCTCTCCTTAGTCTCCAAGAGCTGTC-GAACCCTCGTTGCTTC 161
Query 144 ACTTGAGCTTTACAAGA-TCCGAACGCTCCT-AGGACGACGCACTGAGAATTGTCTTTAT 201
|| ||||||||||||| || || | || | | || ||||| |||| |||||| |||
Sbjct 162 ACCGGAGCTTTACAAGACTC-GATCTTTCTTCA--AC--CGCACGGAGAGTTGTCTCTAT 216
Query 202 CTGAGCTTACGT-TTCAGTTATGGATC-TAACCCACGTTGGTT--CACTCTATGCCGAAG 257
|| ||||| | ||| | || | | ||||||||||||||| ||||||| |||||
Sbjct 217 GTGTGCTTA-GAATTCCCTCCTG-ACCCTAACCCACGTTGGTTTACACTCTA--CCGAAA 272
Query 258 ACC-AACTCGAACCC 271
||| || || |||||
Sbjct 273 ACCTAA-TCAAACCC 286
> Ahg931187 jgi|Araly1|931187|scaffold_303644.1
Length=446
Score = 91.6 bits (49), Expect = 1e-17
Identities = 70/80 (88%), Gaps = 2/80 (3%)
Strand=Plus/Plus
Query 43 CTTCCTGATGATTTACTATTAAACAT-CTTAGGCCGTGTCTCGAGATTGTACTACCCGAT 101
|||||| ||||||| |||||||| | ||||| || || ||||||||||||||||||||
Sbjct 58 CTTCCTAATGATTTGGTATTAAAC-TGCTTAGCCCACGTTTCGAGATTGTACTACCCGAT 116
Query 102 TCTCTCCTTAGTTTCCAAGA 121
|||||||||||||||| |||
Sbjct 117 TCTCTCCTTAGTTTCCCAGA 136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44451321222
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5