BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11780.1
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489994 jgi|Araly1|489994|fgenesh2_kg.6__3128__AT4G11780.1 2078 0.0
> Ahg489994 jgi|Araly1|489994|fgenesh2_kg.6__3128__AT4G11780.1
Length=1434
Score = 2078 bits (1125), Expect = 0.0
Identities = 1338/1439 (93%), Gaps = 22/1439 (2%)
Strand=Plus/Plus
Query 1 ATGGCGTCGATGATCAGTTCCTCTGATCACCGTCTTTCGACAAGCAAGAGACGTTTGAAG 60
||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCGTCGGCGATCAGTTCCTCTGACCATCGTCTATCGACAAGCAAGAGACGTTTGAAG 60
Query 61 CCATTGCTGTTAAGAGATTACTTACTCGATGATCTCAGTTCTTGTTCATCCAACGGTTTC 120
|||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CCATTGATGCTAAGAGATTACTTACTCGATGATCTCAGTTCTTGTTCATCCAACGGCTTC 120
Query 121 AAATCATTCCCACGCCGTCAAACTCCTTCTGCATCTTCCACCGTTCGTCGTCTTCTTGAC 180
|||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 121 AAATCATTCCCACGTCGTCAAACTCCCTCTTCATCTTCCACCGTTCGTCGTCTTCTTGAC 180
Query 181 GCCGAGATCAAACGGTCAGGATTTATCCATCATCATCATCA-CAC--CAAGCAACCACGT 237
||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||| ||||
Sbjct 181 GCCGAGATCAAACGGTCAGGATTGATCCATCATCATCATCATCACAACAAACAACAACGT 240
Query 238 CTCACTAGAAGATCAAGCCATACAACTTGTGGAACGGCGATAAGTCACGCCGTTCATAAA 297
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCACCAGAAGATCAAGCCGTACAACTTGTGGAACGGCGATAAGTCACGCCGTTCATAAA 300
Query 298 GCTTCAACGGCGTTTCTTAAACTTTTGCCGTTCCCTTCTTCCACCGTTAAAAAACAAGGC 357
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 301 GCTTCGACGGCGTTTCTTAAACTTTTGCCGTTCCCTTCTTCCGCCGTTAAAAAACAAGGC 360
Query 358 GTTTTCTCTAGAAGCTTCTCTAAACGGCTTTTAAGCATAAGCTTCTGGAGAAAACCCGTT 417
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 361 GTTTTCTCTAGAAGCTTCTCTAAACGGCTTTTAAGTAGAAGCTTCTGGAGAAAACCCGTC 420
Query 418 G-TAGGTCAATCTCGCCGTGAAGTAACCGGAGATGGAGACGGAGAGATCCAATGGTGGAG 476
| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTA-GTCTATCTCGCCGTGATGTAACCGGAGATGGAGACGGAGAGATCCAATGGTGGAG 479
Query 477 ATCCGTCGCGTACGAAGAGAGTTTAGATCAACAATCCGATCTGTTTTCTCAAATCTCCAC 536
||||||||| ||||||||||| |||||||||| || ||||| | |||||| |||||||
Sbjct 480 ATCCGTCGCATACGAAGAGAGCTTAGATCAACGGTCGGATCTAATCTCTCAACTCTCCAC 539
Query 537 CACCGACGACAAAATAACATTTTCAACCTCAGCCGCTGCGATCACTGTCGTGGAGGAGTT 596
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 540 CACCGACGACAAAATAACATTTTCAATCTCAGCCGCTGCGATCACCACCGTGGAGGAGTT 599
Query 597 TATCTCCGGTGACTCATCGAGTTACGGTAGCGAGTTTTTCACAAACTCATCATCGGAGGT 656
||||||||||| || ||||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct 600 AATCTCCGGTGAGTCTTCGAGTTCCGGCAGCGAGTTTTTCACAAATTCATCATCGGAGGT 659
Query 657 TGTACAGTCTTCTTCCTCATCGTTCTCTTCTTCGTCGAGTGGTGAATCGGAGGAAGTCTC 716
||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 660 TGTGCAGTCTTCTTCTTCATCGTTCTCTTCTTCGTCGAGCGGTGAATCTGAGGAAGTCTC 719
Query 717 -CAGCGAGATCGACGCCGTGGAAGACGGGAAGGAGAGCGGAGATAGTTTAAAGGCACACG 775
|| | | ||||||||||||||||||||| ||||||||||| || ||||| |||| |
Sbjct 720 GAAG-AAAAACGACGCCGTGGAAGACGGGAATGAGAGCGGAGAGAGATTAAACGCACGTG 778
Query 776 ACGGTGACGGATCATCTGTCAACCGCAACAACAGCCTGTGTAACAGAAAGGAATGTGTGA 835
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 779 ACTGTGACGGATCATCTGTCAACGGCAACAACAGCCTGTGTAACAGAAAGGAATGTGTGA 838
Query 836 ATGAAGAGAAAGAACAACTCAGTCCAGTATCGATCTTAGAATGCCCTTTTAAAGA---TG 892
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 839 ATGAAGAGAAAGAACAACTCAGTCCAGTATCAATCTTAGAATGTCCTTTTAAAGACAATG 898
Query 893 -A--TGACGA--A-GACGATGA-AATCACTGACCAAAATGATACATATGAGAAAATTGCT 945
| ||| || | |||||||| || |||||| ||||||| || | |||||||||||||
Sbjct 899 GAAGTGATGATGAAGACGATGAGAA-CACTGATCAAAATGGTATACATGAGAAAATTGCA 957
Query 946 AGAAAAAGCAGGAGATTAAATGGTTTGGTACGGCTTGAGCCACTAGACTTGGATAAACGC 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AGAAAAAGCAGGAGATTAAATGGTTTGGTACGGCTTGAGCCACTAGACTTGGATAAACGC 1017
Query 1006 ATAGAG-AGGTATGTAGAGAGACAAGAAGAGTACTCATATCACACTCTGGAGACGGAAGA 1064
||| || || |||||||||||||||||||||||||||| ||||| || ||||| |||||
Sbjct 1018 ATAAAGGAG-TATGTAGAGAGACAAGAAGAGTACTCATTTCACAAGCTAGAGACCGAAGA 1076
Query 1065 GGACGAATCAGAAAATCAAGCAAACCGCTTGTTTGCTCTTGTGAAGTTGAGAATCGGCGA 1124
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1077 GGACGAATCAGAAAACCAAGCAAACCGCTTGTTTGCTCTTGTGAAATTGAGAATCGGCGA 1136
Query 1125 AACAAATGACCTACTAGCTTCTAAAGTAGCGGATAATCTATTGTTAGACTATCTTCAAGA 1184
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1137 AACAAATGACCTACTAGCTTCCAAAGTAGCGGATAATCTATTGTTAGATTATCTTCAAGA 1196
Query 1185 AGATAACATTGGGCCAAAAGAGGAGACATTAATGGTGAAGAAAGCAGAAGATTGGGTTAT 1244
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AGATAATATTGGGCCAAAAGAGGAGACATTAATGGTGAAGAAAGCAGAAGATTGGGTTAT 1256
Query 1245 GGGTAGACAAGATGAGATGTTTATGAGTTGGGAAGTGAAA-ACGAAGAGAGAGGTTTATG 1303
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1257 GGGTAGACAAGATGAGATGTTTATGAGTTGGGAAGTGAAAGA-GAAGAGAGAGGTTTATG 1315
Query 1304 TGAAGGAAATGAAGTGGGGTTGCATTAATGGAGATGAGAGAGAGAATGTGGTTGAAGAGT 1363
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1316 TGAAGGAAATGAAGTGGGGTTGCATTAAAGGAGATGAGAGAGAGAATGTGGTTGAAGAGT 1375
Query 1364 TGGCTAATGGTTTCTTCACTTCCTTTGTGGATGAATTCATCTACGACTTAGTGTTGTGA 1422
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1376 TGGCTAATGGTTTCTTCACTTCCTTTGTGGATGAATTCATCTTCGACTTAGTGTTGTGA 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53173982020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5