BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11780.1 Length=1422 Score E Sequences producing significant alignments: (Bits) Value Ahg489994 jgi|Araly1|489994|fgenesh2_kg.6__3128__AT4G11780.1 2078 0.0 > Ahg489994 jgi|Araly1|489994|fgenesh2_kg.6__3128__AT4G11780.1 Length=1434 Score = 2078 bits (1125), Expect = 0.0 Identities = 1338/1439 (93%), Gaps = 22/1439 (2%) Strand=Plus/Plus Query 1 ATGGCGTCGATGATCAGTTCCTCTGATCACCGTCTTTCGACAAGCAAGAGACGTTTGAAG 60 ||||||||| ||||||||||||||| || ||||| |||||||||||||||||||||||| Sbjct 1 ATGGCGTCGGCGATCAGTTCCTCTGACCATCGTCTATCGACAAGCAAGAGACGTTTGAAG 60 Query 61 CCATTGCTGTTAAGAGATTACTTACTCGATGATCTCAGTTCTTGTTCATCCAACGGTTTC 120 |||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 61 CCATTGATGCTAAGAGATTACTTACTCGATGATCTCAGTTCTTGTTCATCCAACGGCTTC 120 Query 121 AAATCATTCCCACGCCGTCAAACTCCTTCTGCATCTTCCACCGTTCGTCGTCTTCTTGAC 180 |||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 121 AAATCATTCCCACGTCGTCAAACTCCCTCTTCATCTTCCACCGTTCGTCGTCTTCTTGAC 180 Query 181 GCCGAGATCAAACGGTCAGGATTTATCCATCATCATCATCA-CAC--CAAGCAACCACGT 237 ||||||||||||||||||||||| ||||||||||||||||| ||| ||| |||| |||| Sbjct 181 GCCGAGATCAAACGGTCAGGATTGATCCATCATCATCATCATCACAACAAACAACAACGT 240 Query 238 CTCACTAGAAGATCAAGCCATACAACTTGTGGAACGGCGATAAGTCACGCCGTTCATAAA 297 ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTCACCAGAAGATCAAGCCGTACAACTTGTGGAACGGCGATAAGTCACGCCGTTCATAAA 300 Query 298 GCTTCAACGGCGTTTCTTAAACTTTTGCCGTTCCCTTCTTCCACCGTTAAAAAACAAGGC 357 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 301 GCTTCGACGGCGTTTCTTAAACTTTTGCCGTTCCCTTCTTCCGCCGTTAAAAAACAAGGC 360 Query 358 GTTTTCTCTAGAAGCTTCTCTAAACGGCTTTTAAGCATAAGCTTCTGGAGAAAACCCGTT 417 ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 361 GTTTTCTCTAGAAGCTTCTCTAAACGGCTTTTAAGTAGAAGCTTCTGGAGAAAACCCGTC 420 Query 418 G-TAGGTCAATCTCGCCGTGAAGTAACCGGAGATGGAGACGGAGAGATCCAATGGTGGAG 476 | || ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 421 GTTA-GTCTATCTCGCCGTGATGTAACCGGAGATGGAGACGGAGAGATCCAATGGTGGAG 479 Query 477 ATCCGTCGCGTACGAAGAGAGTTTAGATCAACAATCCGATCTGTTTTCTCAAATCTCCAC 536 ||||||||| ||||||||||| |||||||||| || ||||| | |||||| ||||||| Sbjct 480 ATCCGTCGCATACGAAGAGAGCTTAGATCAACGGTCGGATCTAATCTCTCAACTCTCCAC 539 Query 537 CACCGACGACAAAATAACATTTTCAACCTCAGCCGCTGCGATCACTGTCGTGGAGGAGTT 596 |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 540 CACCGACGACAAAATAACATTTTCAATCTCAGCCGCTGCGATCACCACCGTGGAGGAGTT 599 Query 597 TATCTCCGGTGACTCATCGAGTTACGGTAGCGAGTTTTTCACAAACTCATCATCGGAGGT 656 ||||||||||| || ||||||| ||| ||||||||||||||||| |||||||||||||| Sbjct 600 AATCTCCGGTGAGTCTTCGAGTTCCGGCAGCGAGTTTTTCACAAATTCATCATCGGAGGT 659 Query 657 TGTACAGTCTTCTTCCTCATCGTTCTCTTCTTCGTCGAGTGGTGAATCGGAGGAAGTCTC 716 ||| ||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 660 TGTGCAGTCTTCTTCTTCATCGTTCTCTTCTTCGTCGAGCGGTGAATCTGAGGAAGTCTC 719 Query 717 -CAGCGAGATCGACGCCGTGGAAGACGGGAAGGAGAGCGGAGATAGTTTAAAGGCACACG 775 || | | ||||||||||||||||||||| ||||||||||| || ||||| |||| | Sbjct 720 GAAG-AAAAACGACGCCGTGGAAGACGGGAATGAGAGCGGAGAGAGATTAAACGCACGTG 778 Query 776 ACGGTGACGGATCATCTGTCAACCGCAACAACAGCCTGTGTAACAGAAAGGAATGTGTGA 835 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 779 ACTGTGACGGATCATCTGTCAACGGCAACAACAGCCTGTGTAACAGAAAGGAATGTGTGA 838 Query 836 ATGAAGAGAAAGAACAACTCAGTCCAGTATCGATCTTAGAATGCCCTTTTAAAGA---TG 892 ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || Sbjct 839 ATGAAGAGAAAGAACAACTCAGTCCAGTATCAATCTTAGAATGTCCTTTTAAAGACAATG 898 Query 893 -A--TGACGA--A-GACGATGA-AATCACTGACCAAAATGATACATATGAGAAAATTGCT 945 | ||| || | |||||||| || |||||| ||||||| || | ||||||||||||| Sbjct 899 GAAGTGATGATGAAGACGATGAGAA-CACTGATCAAAATGGTATACATGAGAAAATTGCA 957 Query 946 AGAAAAAGCAGGAGATTAAATGGTTTGGTACGGCTTGAGCCACTAGACTTGGATAAACGC 1005 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 AGAAAAAGCAGGAGATTAAATGGTTTGGTACGGCTTGAGCCACTAGACTTGGATAAACGC 1017 Query 1006 ATAGAG-AGGTATGTAGAGAGACAAGAAGAGTACTCATATCACACTCTGGAGACGGAAGA 1064 ||| || || |||||||||||||||||||||||||||| ||||| || ||||| ||||| Sbjct 1018 ATAAAGGAG-TATGTAGAGAGACAAGAAGAGTACTCATTTCACAAGCTAGAGACCGAAGA 1076 Query 1065 GGACGAATCAGAAAATCAAGCAAACCGCTTGTTTGCTCTTGTGAAGTTGAGAATCGGCGA 1124 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1077 GGACGAATCAGAAAACCAAGCAAACCGCTTGTTTGCTCTTGTGAAATTGAGAATCGGCGA 1136 Query 1125 AACAAATGACCTACTAGCTTCTAAAGTAGCGGATAATCTATTGTTAGACTATCTTCAAGA 1184 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1137 AACAAATGACCTACTAGCTTCCAAAGTAGCGGATAATCTATTGTTAGATTATCTTCAAGA 1196 Query 1185 AGATAACATTGGGCCAAAAGAGGAGACATTAATGGTGAAGAAAGCAGAAGATTGGGTTAT 1244 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 AGATAATATTGGGCCAAAAGAGGAGACATTAATGGTGAAGAAAGCAGAAGATTGGGTTAT 1256 Query 1245 GGGTAGACAAGATGAGATGTTTATGAGTTGGGAAGTGAAA-ACGAAGAGAGAGGTTTATG 1303 |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 1257 GGGTAGACAAGATGAGATGTTTATGAGTTGGGAAGTGAAAGA-GAAGAGAGAGGTTTATG 1315 Query 1304 TGAAGGAAATGAAGTGGGGTTGCATTAATGGAGATGAGAGAGAGAATGTGGTTGAAGAGT 1363 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1316 TGAAGGAAATGAAGTGGGGTTGCATTAAAGGAGATGAGAGAGAGAATGTGGTTGAAGAGT 1375 Query 1364 TGGCTAATGGTTTCTTCACTTCCTTTGTGGATGAATTCATCTACGACTTAGTGTTGTGA 1422 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1376 TGGCTAATGGTTTCTTCACTTCCTTTGTGGATGAATTCATCTTCGACTTAGTGTTGTGA 1434 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53173982020 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5