BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11790.1
Length=1702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489995 jgi|Araly1|489995|fgenesh2_kg.6__3129__AT4G11790.1 977 0.0
> Ahg489995 jgi|Araly1|489995|fgenesh2_kg.6__3129__AT4G11790.1
Length=1394
Score = 977 bits (529), Expect = 0.0
Identities = 646/702 (92%), Gaps = 9/702 (1%)
Strand=Plus/Plus
Query 764 AGCCAACCTGGAACTTTCTCCAGCAGTCAC-TCTGGTATAACATCTAATAGCCAGACGGG 822
|||||||||||| | |||||||||| || | |||||| ||||||||||||||||||| ||
Sbjct 699 AGCCAACCTGGAGCATTCTCCAGCAATC-CTTCTGGTTTAACATCTAATAGCCAGACTGG 757
Query 823 ATCTTTTAGTAGTGGCCAATTTGGTCAGACAAAAAGCAGCCAACCAAGCCTACT-TTCCG 881
||||||||| |||||||| ||| || ||||||||||||||||| ||| | |||||
Sbjct 758 ATCTTTTAGCAGTGGCCAGTTTTGT---TTAAAAAGCAGCCAACCAATTCTA-TCTTCCG 813
Query 882 GCAGTCAAGCAGGAGCAATCTCTAGTAACCAACCTTCTTTTCAATTTTCTAACAGTCAAT 941
||||||||||||||||||| |||| || ||||||||||| |||||||||||| | ||||
Sbjct 814 GCAGTCAAGCAGGAGCAATATCTAATAGCCAACCTTCTTATCAATTTTCTAATAATCAAC 873
Query 942 CCCCTTTTACATCTGCAGTACCTCCAGTGTCCATACCGGCAAAGCAGGA-TCACTCAGAT 1000
||||||||||||||| |||| ||||||||||||||| |||||||| ||| || | |||||
Sbjct 874 CCCCTTTTACATCTGGAGTAACTCCAGTGTCCATACAGGCAAAGCGGGATTC-CACAGAT 932
Query 1001 GATGCGGATGGTGGAGACGAACAATCTCAACCGAGCAGCCCATCTGTCAAAAAGACGGAA 1060
|||||||| |||| |||||||||| ||||||| ||||||||||||||||||||| | |||
Sbjct 933 GATGCGGACGGTGAAGACGAACAACCTCAACCAAGCAGCCCATCTGTCAAAAAGGCTGAA 992
Query 1061 GAAAAGGGTATTACTGTGGTTCATGAAGTCAAATGCAAACTTTATGTCAAGTCAAGTGAC 1120
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 993 GAGAAGGGTGTTACTGTGGTTCATGAAGTCAAATGCAAACTTTATGTCAAGTCAAATGAC 1052
Query 1121 CCAGCAGATAAAGGGTGGAAAGATAAAGGAACTGGGAATCTCTACATAAAATGCAAAGAA 1180
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 CCAACGGATAAAGGGTGGAAAGATAAAGGAACTGGGAATCTCTACATAAAATGCAAAGAA 1112
Query 1181 GGAGTCGACAAGGGGACAAAAGAATCAAAACCCACAATTCTTGTCCGAAACGATGTTGGA 1240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 GGCGTCGACAAGGGGACAAAAGAATCAAAACCCACAATTCTTGTCCGAAACGATGTTGGA 1172
Query 1241 AAACTGCTTCTGAATGCACTACTGTACGCTGGAATGAAGACAAGCCCACAGAAGAACGCT 1300
||||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||
Sbjct 1173 AAACTGCTTCTGAATGCACTACTGTACACGGGAATCAAGACGAGCCCACAGAAGAACGCC 1232
Query 1301 CTTGTTGCAATATTTCACTCCTCGGATGATTCCAACGAGAATGTAACACCGAGAACCTTT 1360
|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1233 CTTGTTGCAATATTCCACTCCTCGGAGGATTCTAACGAGAATGTAACACCGAGAACCTTT 1292
Query 1361 CTGATAAGGACAAAGAACGCAGAAGCTAGAGATAATTTAGCAACGGCCATCCAAGAATAC 1420
|||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1293 CTGATAAGAACAAAGACCGCAGAAGCTAGAGATAAGTTAGCAACGGCCATCCAAGAATAC 1352
Query 1421 GCCCCTTCTTCATAGATTGCCCAAAGCCAGGTTGAGATCTTC 1462
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 GCCCCTTCTTCATAGATTGCCCAAAGCCAGGTTGAGATCTTC 1394
Score = 861 bits (466), Expect = 0.0
Identities = 576/628 (92%), Gaps = 11/628 (2%)
Strand=Plus/Plus
Query 100 AATCATGAGAGGAGTAAAACGCGCCGCCATCTCCGAATCGAATGACTCTCCCTTTAAGAA 159
||||||||||||||| |||||||||||| |||||||||| || || ||| ||||||||||
Sbjct 86 AATCATGAGAGGAGTTAAACGCGCCGCCGTCTCCGAATCAAACGAATCTTCCTTTAAGAA 145
Query 160 TGCAAAACCAGTGGAAGGAATCTTTTTTGGTACTCAGAAGAATGTGGTACCGATGCAGCA 219
|||||||||||||||||||||||| |||||||| ||||||||| | | || ||| || ||
Sbjct 146 TGCAAAACCAGTGGAAGGAATCTTATTTGGTACCCAGAAGAATTTAGCACTGATCCAACA 205
Query 220 GAGTTC-AGTAACATCAGCATCATTGGATAAACAGAGGGCTGAGTTAGCTAGGAAGCATG 278
||| || | ||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 206 GAG-TCTATTAACACCAGCATCATTGGATAAACAGAGAGCTGAGTTAGCTAGGAAGCATG 264
Query 279 TGAGAGCTCTTAATAACCAATTTGTAAGTTGGGTGCAGTTACAGCTGAAGAATCATCCTG 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 TGAGAGCTCTTAATAACCAATTTGTAAGTTGGGTGCAGTTACAGCTGAAGAATCATCCTG 324
Query 339 ATGAACTTTGGGAAGATGGGATGAATGACTACATTACGCATGCTTCAAACATTCTGGAAA 398
|||||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||
Sbjct 325 ATGAACTTTGGGAAGATGGGATGACTGAGTACATTGCGCATGCGTCAAACATTCTGGAAA 384
Query 399 AGTTTAAGGATGTGGTCAGCTGGCTTAAAGAAAATAAGGGAAAGGGGGAGAATTTATCCC 458
|||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||
Sbjct 385 AGTTTAAGGATGTGGTCAACTGGCTAAAAGAAAATAAGGGAAAGGGGGAGAATGTATCCC 444
Query 459 CTGAATCTCGTGGAGCAGAAAATAAATTAGTGGCTGAAGTCAAGAATACCAATGTTAAAT 518
||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| |
Sbjct 445 CTGAATCTCGTGGAGCAGAGAAGAAATTAGTGGCTGAAGTCAAGAATAGTGATGTTAAGT 504
Query 519 CATTTTCAAACAATATTCCT-TTTGCTTCAAACAATCAACCTGGG-ATCTTCTCAAACAA 576
|| ||||||| |||| ||| |||| |||||||| |||||||||| | ||||||||||||
Sbjct 505 CAGTTTCAAATAATAG-CCTATTTGGTTCAAACAGTCAACCTGGGCA-CTTCTCAAACAA 562
Query 577 TCAATCTTCCGATTTTT-CCAGTAGTCAGTCTGGTTTCTTTTCAAGCCAATCTGGAGCAT 635
|||||||||| |||||| |||||||||||||||||||||||||||||||| ||| || ||
Sbjct 563 TCAATCTTCC-ATTTTTTCCAGTAGTCAGTCTGGTTTCTTTTCAAGCCAACCTGTAGTAT 621
Query 636 TCTCCAGCAGTCCTTCTGGTTTGATATCCAATAGCCAGACTGGATCTTTTAGCAGTGGCC 695
|||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 622 TCTCCAGCAGTCCTTCTGGTTTAACATCTAATAGCCAGACTGGATCTTTTAGCAGTGGCC 681
Query 696 AGTTTGGTACGACAAAAAGCAGCCAACC 723
|||||||||| | |||| ||||||||||
Sbjct 682 AGTTTGGTAC-A-AAAA-GCAGCCAACC 706
Score = 191 bits (103), Expect = 2e-47
Identities = 137/153 (90%), Gaps = 3/153 (2%)
Strand=Plus/Plus
Query 620 AGCCAATCTGGAGCATTCTCCAGCAGTCCTTCTGGTTTGATATCCAATAGCCAGACTGGA 679
|||||| |||||||||||||||||| |||||||||||| | ||| |||||||||||||||
Sbjct 699 AGCCAACCTGGAGCATTCTCCAGCAATCCTTCTGGTTTAACATCTAATAGCCAGACTGGA 758
Query 680 TCTTTTAGCAGTGGCCAGTTTGGTACGACAAAAAGCAGCCAACCAAGCCTATTTTCCGGC 739
||||||||||||||||||||| || | |||| |||||||||||| |||| |||||||
Sbjct 759 TCTTTTAGCAGTGGCCAGTTTTGTTT-A-AAAA-GCAGCCAACCAATTCTATCTTCCGGC 815
Query 740 AGTCAAGCCGGAGCAATCTCTAATAGCCAACCT 772
|||||||| |||||||| |||||||||||||||
Sbjct 816 AGTCAAGCAGGAGCAATATCTAATAGCCAACCT 848
Score = 86.1 bits (46), Expect = 8e-16
Identities = 75/87 (86%), Gaps = 9/87 (10%)
Strand=Plus/Plus
Query 3 TGAAGAAAGACACAAAAAACCCTAAATATA-ATTT--CAC-----GCAGCTGCCTCTCTT 54
||||||||||||||| |||||||||||| | |||| | | |||||||||||||||
Sbjct 1 TGAAGAAAGACACAATAAACCCTAAATA-ACATTTGCCCCTTTTAGCAGCTGCCTCTCTT 59
Query 55 TTCTTCTTCCGATCCTCCTTCCGCCGA 81
||||||||||||| |||||||||||||
Sbjct 60 TTCTTCTTCCGATTCTCCTTCCGCCGA 86
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63839250620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5