BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11790.1 Length=1702 Score E Sequences producing significant alignments: (Bits) Value Ahg489995 jgi|Araly1|489995|fgenesh2_kg.6__3129__AT4G11790.1 977 0.0 > Ahg489995 jgi|Araly1|489995|fgenesh2_kg.6__3129__AT4G11790.1 Length=1394 Score = 977 bits (529), Expect = 0.0 Identities = 646/702 (92%), Gaps = 9/702 (1%) Strand=Plus/Plus Query 764 AGCCAACCTGGAACTTTCTCCAGCAGTCAC-TCTGGTATAACATCTAATAGCCAGACGGG 822 |||||||||||| | |||||||||| || | |||||| ||||||||||||||||||| || Sbjct 699 AGCCAACCTGGAGCATTCTCCAGCAATC-CTTCTGGTTTAACATCTAATAGCCAGACTGG 757 Query 823 ATCTTTTAGTAGTGGCCAATTTGGTCAGACAAAAAGCAGCCAACCAAGCCTACT-TTCCG 881 ||||||||| |||||||| ||| || ||||||||||||||||| ||| | ||||| Sbjct 758 ATCTTTTAGCAGTGGCCAGTTTTGT---TTAAAAAGCAGCCAACCAATTCTA-TCTTCCG 813 Query 882 GCAGTCAAGCAGGAGCAATCTCTAGTAACCAACCTTCTTTTCAATTTTCTAACAGTCAAT 941 ||||||||||||||||||| |||| || ||||||||||| |||||||||||| | |||| Sbjct 814 GCAGTCAAGCAGGAGCAATATCTAATAGCCAACCTTCTTATCAATTTTCTAATAATCAAC 873 Query 942 CCCCTTTTACATCTGCAGTACCTCCAGTGTCCATACCGGCAAAGCAGGA-TCACTCAGAT 1000 ||||||||||||||| |||| ||||||||||||||| |||||||| ||| || | ||||| Sbjct 874 CCCCTTTTACATCTGGAGTAACTCCAGTGTCCATACAGGCAAAGCGGGATTC-CACAGAT 932 Query 1001 GATGCGGATGGTGGAGACGAACAATCTCAACCGAGCAGCCCATCTGTCAAAAAGACGGAA 1060 |||||||| |||| |||||||||| ||||||| ||||||||||||||||||||| | ||| Sbjct 933 GATGCGGACGGTGAAGACGAACAACCTCAACCAAGCAGCCCATCTGTCAAAAAGGCTGAA 992 Query 1061 GAAAAGGGTATTACTGTGGTTCATGAAGTCAAATGCAAACTTTATGTCAAGTCAAGTGAC 1120 || |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 993 GAGAAGGGTGTTACTGTGGTTCATGAAGTCAAATGCAAACTTTATGTCAAGTCAAATGAC 1052 Query 1121 CCAGCAGATAAAGGGTGGAAAGATAAAGGAACTGGGAATCTCTACATAAAATGCAAAGAA 1180 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1053 CCAACGGATAAAGGGTGGAAAGATAAAGGAACTGGGAATCTCTACATAAAATGCAAAGAA 1112 Query 1181 GGAGTCGACAAGGGGACAAAAGAATCAAAACCCACAATTCTTGTCCGAAACGATGTTGGA 1240 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1113 GGCGTCGACAAGGGGACAAAAGAATCAAAACCCACAATTCTTGTCCGAAACGATGTTGGA 1172 Query 1241 AAACTGCTTCTGAATGCACTACTGTACGCTGGAATGAAGACAAGCCCACAGAAGAACGCT 1300 ||||||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||| Sbjct 1173 AAACTGCTTCTGAATGCACTACTGTACACGGGAATCAAGACGAGCCCACAGAAGAACGCC 1232 Query 1301 CTTGTTGCAATATTTCACTCCTCGGATGATTCCAACGAGAATGTAACACCGAGAACCTTT 1360 |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1233 CTTGTTGCAATATTCCACTCCTCGGAGGATTCTAACGAGAATGTAACACCGAGAACCTTT 1292 Query 1361 CTGATAAGGACAAAGAACGCAGAAGCTAGAGATAATTTAGCAACGGCCATCCAAGAATAC 1420 |||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||| Sbjct 1293 CTGATAAGAACAAAGACCGCAGAAGCTAGAGATAAGTTAGCAACGGCCATCCAAGAATAC 1352 Query 1421 GCCCCTTCTTCATAGATTGCCCAAAGCCAGGTTGAGATCTTC 1462 |||||||||||||||||||||||||||||||||||||||||| Sbjct 1353 GCCCCTTCTTCATAGATTGCCCAAAGCCAGGTTGAGATCTTC 1394 Score = 861 bits (466), Expect = 0.0 Identities = 576/628 (92%), Gaps = 11/628 (2%) Strand=Plus/Plus Query 100 AATCATGAGAGGAGTAAAACGCGCCGCCATCTCCGAATCGAATGACTCTCCCTTTAAGAA 159 ||||||||||||||| |||||||||||| |||||||||| || || ||| |||||||||| Sbjct 86 AATCATGAGAGGAGTTAAACGCGCCGCCGTCTCCGAATCAAACGAATCTTCCTTTAAGAA 145 Query 160 TGCAAAACCAGTGGAAGGAATCTTTTTTGGTACTCAGAAGAATGTGGTACCGATGCAGCA 219 |||||||||||||||||||||||| |||||||| ||||||||| | | || ||| || || Sbjct 146 TGCAAAACCAGTGGAAGGAATCTTATTTGGTACCCAGAAGAATTTAGCACTGATCCAACA 205 Query 220 GAGTTC-AGTAACATCAGCATCATTGGATAAACAGAGGGCTGAGTTAGCTAGGAAGCATG 278 ||| || | ||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 206 GAG-TCTATTAACACCAGCATCATTGGATAAACAGAGAGCTGAGTTAGCTAGGAAGCATG 264 Query 279 TGAGAGCTCTTAATAACCAATTTGTAAGTTGGGTGCAGTTACAGCTGAAGAATCATCCTG 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 TGAGAGCTCTTAATAACCAATTTGTAAGTTGGGTGCAGTTACAGCTGAAGAATCATCCTG 324 Query 339 ATGAACTTTGGGAAGATGGGATGAATGACTACATTACGCATGCTTCAAACATTCTGGAAA 398 |||||||||||||||||||||||| ||| |||||| ||||||| |||||||||||||||| Sbjct 325 ATGAACTTTGGGAAGATGGGATGACTGAGTACATTGCGCATGCGTCAAACATTCTGGAAA 384 Query 399 AGTTTAAGGATGTGGTCAGCTGGCTTAAAGAAAATAAGGGAAAGGGGGAGAATTTATCCC 458 |||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| Sbjct 385 AGTTTAAGGATGTGGTCAACTGGCTAAAAGAAAATAAGGGAAAGGGGGAGAATGTATCCC 444 Query 459 CTGAATCTCGTGGAGCAGAAAATAAATTAGTGGCTGAAGTCAAGAATACCAATGTTAAAT 518 ||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| | Sbjct 445 CTGAATCTCGTGGAGCAGAGAAGAAATTAGTGGCTGAAGTCAAGAATAGTGATGTTAAGT 504 Query 519 CATTTTCAAACAATATTCCT-TTTGCTTCAAACAATCAACCTGGG-ATCTTCTCAAACAA 576 || ||||||| |||| ||| |||| |||||||| |||||||||| | |||||||||||| Sbjct 505 CAGTTTCAAATAATAG-CCTATTTGGTTCAAACAGTCAACCTGGGCA-CTTCTCAAACAA 562 Query 577 TCAATCTTCCGATTTTT-CCAGTAGTCAGTCTGGTTTCTTTTCAAGCCAATCTGGAGCAT 635 |||||||||| |||||| |||||||||||||||||||||||||||||||| ||| || || Sbjct 563 TCAATCTTCC-ATTTTTTCCAGTAGTCAGTCTGGTTTCTTTTCAAGCCAACCTGTAGTAT 621 Query 636 TCTCCAGCAGTCCTTCTGGTTTGATATCCAATAGCCAGACTGGATCTTTTAGCAGTGGCC 695 |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| Sbjct 622 TCTCCAGCAGTCCTTCTGGTTTAACATCTAATAGCCAGACTGGATCTTTTAGCAGTGGCC 681 Query 696 AGTTTGGTACGACAAAAAGCAGCCAACC 723 |||||||||| | |||| |||||||||| Sbjct 682 AGTTTGGTAC-A-AAAA-GCAGCCAACC 706 Score = 191 bits (103), Expect = 2e-47 Identities = 137/153 (90%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 620 AGCCAATCTGGAGCATTCTCCAGCAGTCCTTCTGGTTTGATATCCAATAGCCAGACTGGA 679 |||||| |||||||||||||||||| |||||||||||| | ||| ||||||||||||||| Sbjct 699 AGCCAACCTGGAGCATTCTCCAGCAATCCTTCTGGTTTAACATCTAATAGCCAGACTGGA 758 Query 680 TCTTTTAGCAGTGGCCAGTTTGGTACGACAAAAAGCAGCCAACCAAGCCTATTTTCCGGC 739 ||||||||||||||||||||| || | |||| |||||||||||| |||| ||||||| Sbjct 759 TCTTTTAGCAGTGGCCAGTTTTGTTT-A-AAAA-GCAGCCAACCAATTCTATCTTCCGGC 815 Query 740 AGTCAAGCCGGAGCAATCTCTAATAGCCAACCT 772 |||||||| |||||||| ||||||||||||||| Sbjct 816 AGTCAAGCAGGAGCAATATCTAATAGCCAACCT 848 Score = 86.1 bits (46), Expect = 8e-16 Identities = 75/87 (86%), Gaps = 9/87 (10%) Strand=Plus/Plus Query 3 TGAAGAAAGACACAAAAAACCCTAAATATA-ATTT--CAC-----GCAGCTGCCTCTCTT 54 ||||||||||||||| |||||||||||| | |||| | | ||||||||||||||| Sbjct 1 TGAAGAAAGACACAATAAACCCTAAATA-ACATTTGCCCCTTTTAGCAGCTGCCTCTCTT 59 Query 55 TTCTTCTTCCGATCCTCCTTCCGCCGA 81 ||||||||||||| ||||||||||||| Sbjct 60 TTCTTCTTCCGATTCTCCTTCCGCCGA 86 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63839250620 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5