BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11810.1
Length=2429
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489997 jgi|Araly1|489997|fgenesh2_kg.6__3131__AT4G11810.1 3435 0.0
Ahg945819 jgi|Araly1|945819|scaffold_702048.1 1971 0.0
Ahg475048 jgi|Araly1|475048|fgenesh2_kg.2__178__AT1G63010.1 699 0.0
> Ahg489997 jgi|Araly1|489997|fgenesh2_kg.6__3131__AT4G11810.1
Length=2124
Score = 3435 bits (1860), Expect = 0.0
Identities = 2041/2129 (96%), Gaps = 10/2129 (0%)
Strand=Plus/Plus
Query 306 ATGGTCGCCTTTGGAAAAAAGCTCAAGGAACGTAGCATTGAAGAATGGCAAGAATATTAC 365
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGTCGCCTTTGGAAAAAAGCTCAAGGAACGCAGCATTGAAGAATGGCAAGAATATTAC 60
Query 366 ATCAATTACAAATTGATGAAGAAGAAAGTGAAGCAATATGGTCCACAAATCGAAGTAGGA 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCAATTACAAATTGATGAAGAAGAAAGTGAAGCAATATGGTCCACAAATCGAAGTAGGA 120
Query 426 AGTTTAGATCGCCGCCATGTTCTTAAAGATTTCTCAAGGATGTTGGATCATCAGATCGAG 485
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 AGTCTAGATCGCCGTCATGTTCTTAAAGATTTCTCAAGGATGTTGGATCATCAGATTGAG 180
Query 486 AAAATCGCTCTTTTCATGTTGGAGCAACAAGGTTTGCTTTCAAGTAGGTTACAAAAGCTA 545
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 181 AAAATCGCTCTTTTCATGTTGGAGCAACAAGGCTTGCTTTCAAGTAGGCTACAAAAGCTA 240
Query 546 AGGGAATGGCATGATACACTTCAAGATGAGCCTGACTTATCTCAGATAGCTAAGCTAAGA 605
||||||||||||||| |||| ||||||||||||||||||||| ||||| |||||||||||
Sbjct 241 AGGGAATGGCATGATGCACTCCAAGATGAGCCTGACTTATCTGAGATATCTAAGCTAAGA 300
Query 606 GAGGCTTATAGAGCCGTGGGACAAGATCTTCTCAAGCTTCTGTTTTTCATCGATATGAAT 665
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GAGGCTTATAGATCCGTGGGACAAGATCTTCTTAAGCTTCTGTTTTTCATCGATATGAAT 360
Query 666 GCTATTGGTATCCGCAAGATACTGAAGAAATTCGATAAGAGATTCGGTTATCGATTCACA 725
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 361 GCTATTGGTATCCGCAAGATACTAAAGAAATTCGATAAAAGATTCGGTTATCGATTCACA 420
Query 726 AACTATTATGTCAAGACTCGCGCTGATCATCCTTACTCTCAACTTCAGCAAGTGTTTAGA 785
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 421 AACTATTATGTCAAGACTCGCGCTGATCATCCTTACTCTCAACTTCAACAAGTATTTAGA 480
Query 786 CATGTGG---GCCTTGGAGCTGTTGTTGGAGCCATATCTCGCAACCTTCATGAGCTTCAA 842
||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 CATGTGGTAAGTCTTGGAGCTGTTGTTGGAGCCATATCGCGCAACCTTCATGAGCTTCAA 540
Query 843 AACAATGAAGGAAGCTACTTATCCATTTATGACCAGCCTGTTCTTCCTCTTCAGGATCCT 902
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 AACAATGAAGGAAGCTACTTATCCATTTATGATCAGCCTGTTCTTCCTCTTCAGGATCCT 600
Query 903 GTAGTGGATTCGATTAAGAATGCAGTGGACAGGCTAACACATTCAACAAACTTTCTTAAT 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTAGTGGATTCGATTAAGAATGCAGTGGACAGGCTAACACATTCAACAAACTTTCTTAAT 660
Query 963 TTCATGGCTCAACATGCTTTAATCATGCAAGACGATGAAGACCTACTAATGCTTCCTCCA 1022
||||||||||||||||||||||||||||||||||| | || ||||||||| ||||| ||
Sbjct 661 TTCATGGCTCAACATGCTTTAATCATGCAAGACGA--A-GATCTACTAATGATTCCTGCA 717
Query 1023 GACGAGCAAGCGGAAAAAGAAGAAGGAAGATATCACTTCATGTCACTATTGTTAAACTTG 1082
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 718 GACGAGCAAGCGGAACAAGAAGAAGGAAGATATCACTTCATGTCTCTATTGTTAAACTTG 777
Query 1083 GCCAACACGTTTCTTTATATGGTCAATACATATATCATTGTTCCAACAGCTGATGATTAC 1142
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 778 GCCAACACGTTTCTTTATATGGTCAATACATATATCATTGTTCCTACAGCTGATGATTAC 837
Query 1143 TCTATGAGCCTTGGAGCAGCCGCAACGGTTTGTGGTGTTGTTATCGGTGCTATGGCCGTT 1202
|| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||
Sbjct 838 TCAATGAGCCTTGGAGCAGCAGCAACGGTTTGCGGTGTTGTTATTGGTGCTATGGCTGTT 897
Query 1203 GCTCAGCTCTTCTCTTCCGTTTACTTCAGTGCTTGGTCCAATAAATCTTACTTCAAGCCG 1262
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 898 GCTCAGCTCTTCTCTTCTGTTTACTTCAGTGCTTGGTCCAATAAATCTTACTTCAAACCG 957
Query 1263 CTTATATTTAGTAGCATCGTTCTTTTCTTTGGGAACTTGTTATATGCTTTGGCTTATGAC 1322
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CTTATATTTAGTAGTATTGTTCTTTTCTTTGGGAACTTGTTATATGCTTTGGCTTATGAC 1017
Query 1323 TTTAATTCATTAGCACTTCTCTTGATTGGTCGGCTTTTTTGTGGATTTGGTTCAGCGAGA 1382
|| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 1018 TTCAATTCATTAGCACTTCTCTTGATTGGCCGGCTTTTCTGTGGATTTGGTTCGGCGAGA 1077
Query 1383 GCAGTGAACCGGAGATATATAAGCGATTGTGTGCCGCTGAAAATCCGAATGCAGGCTTCA 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GCAGTGAACCGGAGATATATAAGCGATTGTGTGCCGCTGAAAATCCGAATGCAGGCTTCA 1137
Query 1443 GCGGGTTTTGTTAGTGCAAGTGCTCTAGGAATGGCTTGTGGTCCTGCTCTTGCTGGCTTG 1502
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1138 GCAGGTTTTGTTAGTGCAAGTGCTCTAGGAATGGCGTGTGGTCCTGCTCTTGCTGGTTTG 1197
Query 1503 TTGCAAACTGATTTCAAGATCAAAAATGTTACATTTAACCAAGATACGTTACCTGGTTGG 1562
|||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 1198 TTGCAAACCGATTTCAAGATAAAAAATGTCACATTTAACCAAGATACATTACCTGGTTGG 1257
Query 1563 GTTATGGCTGTTGCTTGGCTATTGTACTTAGTCTGGTTAGCTATTTCGTTTCGGGAACCT 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1258 GTTATGGCTGTTGCTTGGCTATTGTACTTAGTCTGGTTAGCTATTTCGTTTCGAGAACCC 1317
Query 1623 GCACGTGAGCCAGAAGAGATTCATACTTCACAAGAGTCTACCTCTGAGCAAATCTTTTGT 1682
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GCACGTGAGCCTGAAGAGATTCATACTTCACAAGAGTCTACCTCTGAGCAAATCTTTTGT 1377
Query 1683 GGTGAAGCTGATCAAGATGGAAATATAGAGAAAGGTCTTAAAAAACCGCTGTTGCTTGCA 1742
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1378 GATGAAGCTGATCAAGATGGAAATATGGAGAAAGGTCTTAAAAAACCGCTGTTGCTTGCA 1437
Query 1743 TCGGAAGAAACAGAACATGATGAAGAAGATGACGGTGATGGAAGCGAGGAATCTTCTGAT 1802
|| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1438 TCAGAAGAAACAGAACAGGATGAAGAAGATGACGGGGATGGAAGCGAAGAATCTTCTGAC 1497
Query 1803 GATTCCCGTAAACCCGCTAACTCCTTTGTAGCTGCTTACAAGCTACTCACTCCTTCAGTA 1862
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1498 GATTCCCGTAAACCCGCTAATTCCTTTGTAGCTGCTTACAAACTACTCACTCCTTCAGTG 1557
Query 1863 AAGGTTCAATTGTTGATATACTTCATGCTTAAGTATGCAATGGAGATTCTACTATCAGAA 1922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AAGGTTCAATTGTTGATATACTTCATGCTTAAGTATGCAATGGAGATTCTACTATCAGAA 1617
Query 1923 TCAAGTGTTGTAACCACATATTACTTTGGTTGGTCCATGAGTTCTGTTTCCATCTTCTTG 1982
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1618 TCAAGTGTTGTTACCACATATTACTTCGGTTGGTCCATGAGTTCTGTTTCCATCTTCTTG 1677
Query 1983 TTCTGTCT-GGGTCTAACCGTTTTACCGGTTAACCTCGTTGTTGGAAGCTATATCAGCAA 2041
|||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1678 TTCTGTCTCGGG-CTAACCGTTCTACCGGTTAACCTCGTTGTTGGAAGCTATATCAGCAA 1736
Query 2042 CATGTTCGAAGATCGGCAAATTCTGTTAGCGTCAGAGATTATGGTCTGTATCGGAATAGT 2101
|||||| |||||||||||||||||| | ||||||||||||||||||||||| |||||| |
Sbjct 1737 CATGTTTGAAGATCGGCAAATTCTGCTGGCGTCAGAGATTATGGTCTGTATAGGAATACT 1796
Query 2102 TCTCAGCTTCCATGTAGTAATCCCTTACACTGTCCCACAATACGTTATCTCAGGATTTAT 2161
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||
Sbjct 1797 TCTCAGCTTCCATGTAGTAATCCCTTACACTGTGCCACAATACGTTTTCTCAGGATTCAT 1856
Query 2162 CATGTTTGTTTCTGCTGAAGTTCTTGAAGGTGTGAACTTATCGTTACTATCGAGAGTGAT 2221
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1857 CATGTTTGTTTCTGCTGAAGTTCTTGCAGGTGTGAACTTATCGTTACTATCGAGAGTGAT 1916
Query 2222 GTCATCGAGGCTGTCCCGCGGGACTTATAACGGAGGGTTACTGTCGACGGAAGCTGGCAC 2281
|||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1917 GTCATCGAGGCTATCACGCGGGACTTACAACGGAGGGTTACTGTCGACGGAAGCTGGCAC 1976
Query 2282 GATTGCACGTGTGATAGCGGATGCGACGATCACTTTGGCTGG-TTTCTTGGGACAGAGTA 2340
||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1977 GATCGCACGTGTGATAGCGGATGCGACGATCACTTTGGCTGGATTT-TTGGGACAGAGTA 2035
Query 2341 TGCTTTTGAATGTTACTCTGCTTCCTTCTTTGATCATCTGTGTTTTGTCTATCCTAGCTA 2400
|||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||
Sbjct 2036 TGCTTTTGAATGTTACTCTGCTTCCTTCTTTGGTCATCTGTGTTGGGTCTATCGTAGCTA 2095
Query 2401 CTTGTTATACTTATAACTCCTTGTATTAG 2429
|||||||||||||||||||||||||||||
Sbjct 2096 CTTGTTATACTTATAACTCCTTGTATTAG 2124
> Ahg945819 jgi|Araly1|945819|scaffold_702048.1
Length=2142
Score = 1971 bits (1067), Expect = 0.0
Identities = 1809/2159 (84%), Gaps = 84/2159 (4%)
Strand=Plus/Plus
Query 301 AGAAAATGGTCGCCTTT-GGAAAAAAGCTCAAGGAACGTAGCATTGAAGAATGGCAAGAA 359
|||| ||||| | |||| || ||||||||||||||||| |||||| |||||||||||| |
Sbjct 18 AGAAGATGGTAG-CTTTCGGGAAAAAGCTCAAGGAACGGAGCATTCAAGAATGGCAAGGA 76
Query 360 TATTACATCAATTACAAATTGATGAAGAAGAAAGTGAAGCAATATGGTC-CACAAATCGA 418
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| | ||
Sbjct 77 TATTACATCAATTACAAATTGATGAAGAAGAAAGTGAAGCAATATAGTCGC-CAATTAGA 135
Query 419 AGTAGG-AAGT-TTAGATCGCCGCCATGTTCTTAAAGATTTCTCAAGGATG-TTGGATCA 475
|| || || | || || ||||| ||||||||||||||||||||||||||| ||| || |
Sbjct 136 AGGCGGGAA-TCTT-GAGCGCCGTCATGTTCTTAAAGATTTCTCAAGGATGCTTG-ATAA 192
Query 476 TCAGATCGAGAAAATCGCTCTTTTCATGTTGGAGCAACAAGGTTTGCTTTCAAGTAGGTT 535
||||| |||||||| |||||||||||||||||||||||||| |||||| |||||||| |
Sbjct 193 CCAGATTGAGAAAATAGCTCTTTTCATGTTGGAGCAACAAGGATTGCTTGCAAGTAGGCT 252
Query 536 ACAAA-AGCTAAGGGAATGGCATGATACACTTCAAGATG-AGCCTGACT-TATCTCAGAT 592
||| | | ||||||| | ||||||| | || ||||| | |||| || | ||||||| ||
Sbjct 253 ACAGAGA-CTAAGGGGACCGCATGATGCTCTCCAAGA-GCAGCCGGA-TATATCTCATAT 309
Query 593 AG-CTAAGCTAAGAG-AGGCTTATAGAGCCGT-GGGACAAGATCTTCTCAAGCTTCTGTT 649
| |||| |||| || ||| |||||||| || ||| |||||||||||||||||||||||
Sbjct 310 -GTCTAATCTAA-AGGAGGAGTATAGAGCTGTTGGG-CAAGATCTTCTCAAGCTTCTGTT 366
Query 650 TTTCATCGATATGAATGCTATTGGTATCCGCAAGATACTGAAGAAATTCGATAAGA-GAT 708
||| |||| |||||||||||||||||||| ||||||||||||||||||||||| | | |
Sbjct 367 TTTTGTCGAGATGAATGCTATTGGTATCCGTAAGATACTGAAGAAATTCGATAA-ACGGT 425
Query 709 TCGGTTATCGATTCACAAACTATTATGTCAAGACTCGCGCTGATCATCCTTACTCTCAAC 768
| ||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |||
Sbjct 426 TTGGTTATCGATTCACAAACTATTATGTCAAGACTCGAGCTAACCATCCTTACTCTGAAC 485
Query 769 TTCAGCAAGTGTTTAGACATGTGGGCCTTGGAGCTGTTGTTGGAGCCATATCTCGCAACC 828
| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 486 TCCAGCAAGTCTTTAGACATGTGGGCCTTGGAGCTGTTGTTGGAGCTGTATCTCGCAACC 545
Query 829 TTCATGAGCTTCAAAACAATGAAGGAAGCTACTTATCCATTTATGACCAGCCTGTTCTTC 888
|||||||||||||||||||| |||||||||||||||| |||||||| |||||| ||||||
Sbjct 546 TTCATGAGCTTCAAAACAATCAAGGAAGCTACTTATCGATTTATGATCAGCCTATTCTTC 605
Query 889 CTCTTCAGGATCCTGTAGTGGATTCGATTAAGAATG-CAGTGGACAGGCTAACACATTCA 947
||||||| |||||||| ||||| || |||| || | ||||||| |||||||| | |||
Sbjct 606 CTCTTCAAGATCCTGTCGTGGACTCAATTA-GAGCGGCAGTGGATAGGCTAACGCGGTCA 664
Query 948 ACAAACTTTCTTA-ATTTCATGGCTCAACATGCT-TTAATCATGCAAGACGATGAAGACC 1005
||||||||||| | | ||||||||||| || || ||| | |||||||| | || |
Sbjct 665 ACAAACTTTCT-ACACTTCATGGCTCAGCACGCGCTTA-TAATGCAAGA--A-GA-GT-- 716
Query 1006 TACTAATGCTTCCTCCAGACGAGCAAGCGGAAAAAGAAGAAGGAAGATATCACTTCATGT 1065
||| || | | || | ||| ||| ||| |||| ||||||| || ||||||||||||||||
Sbjct 717 TACCAA-G-T-CCGCAAGATGAGGAAGGGGAAGAAGAAGATGGGAGATATCACTTCATGT 773
Query 1066 CACTATTGTTAAACTTGGCCAACACGTTTCTTTATATGGTCAATACATATATCATTGTTC 1125
| || ||||| || |||| |||||| ||||| |||||||||||||||||||||||||| |
Sbjct 774 CTCTCTTGTTGAATTTGGTCAACACATTTCTCTATATGGTCAATACATATATCATTGTCC 833
Query 1126 CAACAGCTGATGATTACTCTATGAGCCTTGGAGCAGCCGCAACGGTTTGTGGTGTTGTTA 1185
| ||||| ||||| || || |||||||| || ||||| |||||||| || |||||||| |
Sbjct 834 CTACAGCAGATGACTATTCCATGAGCCTCGGTGCAGCGGCAACGGTGTGCGGTGTTGTGA 893
Query 1186 TCGGTGCTATGGCCGTTGCTCAGCTCTTCTCTTCCGTTTACTTCAGTGCTTGGTCCAATA 1245
| ||||||||||| || ||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 894 TTGGTGCTATGGCTGTAGCTCAGCTCTTCTCTTCGGTTTACTTCAGCGCCTGGTCCAATA 953
Query 1246 AATCTTACTTCAAGCCGCTTATATTTAGTAGCATCGTTCT-TTTCTTTGGGAACTTGTTA 1304
||| |||||||| || || ||||| |||||||| || || ||| || ||||||||||||
Sbjct 954 GATCCTACTTCAAACCACTCATATTCAGTAGCATTGTCCTCTTTATT-GGGAACTTGTTA 1012
Query 1305 TATGCTTTGGCTTATGACTTTAATTCATTAGCACTTCTCTTGATTGGTCGGCTTTTTTGT 1364
||||| || |||| |||||| |||||| |||| |||||||||||||| | ||||| |||
Sbjct 1013 TATGCATTAGCTTTTGACTTCAATTCAATAGCGGTTCTCTTGATTGGTAGACTTTTCTGT 1072
Query 1365 GGATTTGGTTCAGCGAGAGCAGTGAACCGGAGATATATAAGCGATTGTGTGCCGCTGAAA 1424
|||||||| || || |||||||||||||||||||||||||| || ||||| ||| | |||
Sbjct 1073 GGATTTGGATCGGCAAGAGCAGTGAACCGGAGATATATAAGTGACTGTGTACCGTT-AAA 1131
Query 1425 -ATCCGAATGCAGGCTTCAGCGGGTTTTGTTAGTGCAAGTGCTCTAGGAATGGCTTGTGG 1483
||| | |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1132 GATCAGGATGCAGGCTTCAGCAGGTTTTGTTAGTGCAAGTGCTCTAGGAATGGCGTGTGG 1191
Query 1484 TCCTGCTCTTGCTGG-CTTGTTGCAAA-CTGATTTCAAGATCAA-AAATGTTACATTTAA 1540
|||||| |||||||| || ||||||| | |||| || ||| | ||| ||||||||||
Sbjct 1192 TCCTGCGCTTGCTGGTCTA-TTGCAAATCAGATT-CACGATTTATAAAC-TTACATTTAA 1248
Query 1541 CCAAGATACGTTACCTGGTTGGGTTATGGCTGTTGCTTGGCT-ATTGTACTTAGTCTGGT 1599
||||||||| || |||||||||||||||||||| |||||||| || ||||| || ||||
Sbjct 1249 CCAAGATACATTGCCTGGTTGGGTTATGGCTGTGGCTTGGCTTATA-TACTTGGTATGGT 1307
Query 1600 TAGCTATTTCGTTTCGGGAACCTGCACGTGAGCCAGAAGAGATTCATA---CTTCACAAG 1656
||||||| |||||||| || |||||||||||||| || | | || || ||||| |||
Sbjct 1308 TAGCTATATCGTTTCGTGAGCCTGCACGTGAGCCTGAGGGGCCTCCTAAGACTTCAGAAG 1367
Query 1657 AGTCTACCTCTGAGCAAATCTTTTGTGGTGAAGCTGATCAAGATGGAAATATAGAGAAAG 1716
|||||| || | ||| ||| | ||| || | || || | | |||||||
Sbjct 1368 AGTCTAA-TC--AT----TCTGCTGT--TCAAG---AT---G-TG-AA-TCTGGAGAAAG 1409
Query 1717 GTCTTAAAAAACCGCTGTTGCTTGCATCGGAAGAAACAGAACATGATGAAGAAGATGACG 1776
|| | ||| |||| || ||||| |||| ||||||| |||| | | | ||||||||
Sbjct 1410 GTATGAAACAACCATTGCTGCTTACATCAGAAGAAATAGAAGAACAGGGTGAAGATGAAT 1469
Query 1777 GTGATGGAAGCGAGGAATCTTCTGATGATTCCCGTAAACCCGCTAACTCCTTTGTAGCTG 1836
||||||||||||| ||| ||||||| ||||| |||| ||| || |||||| |||||||||
Sbjct 1470 GTGATGGAAGCGAAGAAGCTTCTGAGGATTCTCGTACACCTGCAAACTCCATTGTAGCTG 1529
Query 1837 CTTACAAGCT-ACTCACTCCTTCAGTAAAGGTTCAATTGTTGATATACTTCATGCTTAAG 1895
|||| | | | |||||| |||||||| ||||||||| | ||||||||||||||||| |||
Sbjct 1530 CTTATA-GATTACTCACACCTTCAGTTAAGGTTCAACTATTGATATACTTCATGCTCAAG 1588
Query 1896 TATGCAATGGAGATTCTACTATCAGAATCAAGTGTTGTAACCACATATTACTTTGGTTGG 1955
||||||||||||||||| || || ||||| ||||| | ||||| || ||||||||||||
Sbjct 1589 TATGCAATGGAGATTCTTCTCTCTGAATCTAGTGTCATCACCACTTACTACTTTGGTTGG 1648
Query 1956 TCCATGAGTTCTGTTTCCATCTTCTTGTTCTGTCTGGGTCTAACCGTT-TTACCGGTTAA 2014
|||| ||| || ||| | ||||| ||||| ||||| ||||| || ||| || || |||||
Sbjct 1649 TCCACGAGCTCGGTTGCGATCTTTTTGTTTTGTCTCGGTCTCACGGTTCTT-CCAGTTAA 1707
Query 2015 CCTCGTTGTTGGAAGCTATATCAGCAACATGTTCGAAGATCGGCAAATTCT-GTTAGCGT 2073
|||||| |||||||||||||| ||||||||||||||||| |||||||| || ||| | |
Sbjct 1708 CCTCGTCGTTGGAAGCTATATAAGCAACATGTTCGAAGACCGGCAAAT-CTTGTTGGTAT 1766
Query 2074 CAGAGATTATGGTCTGTATCGGAATAGTTCTCAGCTTCCATGTAGTAATCCCTTACACTG 2133
| ||||||||||||||| |||||||| |||||||||||||||| || |||| |||||||
Sbjct 1767 CGGAGATTATGGTCTGTGTCGGAATACTTCTCAGCTTCCATGTCGTTGTCCCCTACACTG 1826
Query 2134 TCCCACAATACGTTAT-CTCAGGATTTATCATGTTTGTTTCTGCTGAAGTTCTTGAAGGT 2192
| |||||||||||| | ||||||| | ||||||||||||||||| |||||||||||||||
Sbjct 1827 TGCCACAATACGTT-TGCTCAGGACTCATCATGTTTGTTTCTGCAGAAGTTCTTGAAGGT 1885
Query 2193 GTGAA-CTTATCGTTACTATCGAGAGTGATGTCATCGAGGCTGTCCCGCGGGACTTATAA 2251
|| || || ||||||||| || ||||| ||||| |||||||| || | |||||||||||
Sbjct 1886 GTTAATCT-ATCGTTACTCTCTAGAGTTATGTCGTCGAGGCTATCGAGAGGGACTTATAA 1944
Query 2252 CGGAGGGTTACTGTCGACGGAAGCTGGCACGATTGCACGTGTGATAGCGGATGCGACGAT 2311
|||||| || || || ||||| ||||||||||| ||||||||||| || || || |||||
Sbjct 1945 CGGAGGTTTGCTTTCAACGGAGGCTGGCACGATCGCACGTGTGATTGCTGACGCAACGAT 2004
Query 2312 CACTTTGGCTGGTTTCTTGGGACAGAGTATGCTTTTGAATGTTACTCTGCTTCCTTCTTT 2371
|| | || |||| ||| |||| || ||||||||||||||||||||| ||||| ||| |
Sbjct 2005 TACCGTCGCCGGTTACTTCGGACGGAATATGCTTTTGAATGTTACTCTACTTCCGTCTCT 2064
Query 2372 -GATCATCTGTGTTTTGTCTATCCTAGCTACTTGTTATACTTATAACTCCTTGTATTAG 2429
| |||| ||||||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 2065 AG-TCATTTGTGTTTTGTCCATTGTAGCTACTTGTTTTACTTATAACTCCTTGTATTAG 2122
> Ahg475048 jgi|Araly1|475048|fgenesh2_kg.2__178__AT1G63010.1
Length=2508
Score = 699 bits (378), Expect = 0.0
Identities = 992/1280 (78%), Gaps = 75/1280 (6%)
Strand=Plus/Plus
Query 360 TATTACATCAATTACAAATTGATGAAGAAGAAAGTGAAGCAATATGGTCCACAAATCGAA 419
|||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| ||
Sbjct 212 TATTACATCAATTACAAATTGATGAAGAAGAAAGTGAAACAATATGCTGAACAAATCCAA 271
Query 420 GTAGGAAGTTTAGATCGC-CGCCATGTTCTTAAAGATTTCTCAAGGATGTTGGAT-CATC 477
| ||| | | ||| | ||||||||||| |||||||||||||||||| | ||| | ||
Sbjct 272 GGCGGATCTCAACATC-CTCGCCATGTTCTCAAAGATTTCTCAAGGATGCTCGATAC-TC 329
Query 478 AGATCGAGAAAA-TCGCTC-TTTTCATGTTGGAGCAACAAGGTTTGCTTTCAAGTAGGTT 535
|||| |||| || | | || ||||||||||||| |||||||| |||||| || | | ||
Sbjct 330 AGATTGAGACAACT-G-TCCTTTTCATGTTGGAACAACAAGGGTTGCTTGCAGGGCGATT 387
Query 536 A-CAAAAGCTAAGGGAATGGCATGATAC-ACTTCAAGATG-AGCCTGACTTATCTCAGA- 591
| | ||| | |||||| ||||||| | | | | || | |||||||| |||| |||
Sbjct 388 AGCCAAAT-TGAGGGAAACGCATGATGCTA-TACTTGA-GCAGCCTGACATATCA-AGAA 443
Query 592 TAG-CTAAGCTAAGAGAGGCTTATAGAGCCGTGGGACAAGATCTTCTCAAGCTTCTGTTT 650
| | | | |||| |||| || || |||| ||| |||| ||| |||||| |||| |||
Sbjct 444 TTGTCGA-GCTACGAGAAGCATACAGAGACGTTGGACGAGACCTTCTCCAGCTCCTGAAA 502
Query 651 TTCATCGA-TATGAATGCTATTGGTATCCGCAAGATACTGAAGAAATTCGATAAGA-GAT 708
||| | || | |||| || ||||| | ||||||||||| || |||||||| || | | |
Sbjct 503 TTCGTTGAGT-TGAACGCCGTTGGTCTGCGCAAGATACTTAAAAAATTCGACAA-ACGTT 560
Query 709 TCGGTTATCGATTCACAAACTATTATGTCAAGACTCGCGCTGATCATCCTTACTCTCAAC 768
| |||||| ||||| | | ||||| || ||||| |||||| |||||||||||||||| |
Sbjct 561 TTGGTTATAGATTCGCTGATTATTACGTGAAGACACGCGCTAATCATCCTTACTCTCAGC 620
Query 769 TTCAGCAAGTGTTTA-GACATGTGGGCCTTGGAGCTGTTGTTGGAGCCATATCTCGCAAC 827
|||| ||||| |||| | |||||||| | |||||||||||||| || || ||||||||
Sbjct 621 TTCAACAAGTCTTTAAG-CATGTGGGTGTAGGAGCTGTTGTTGGGGCAATTTCTCGCAAT 679
Query 828 CTTCATGAGCTTCAA-AACAATGAAGGAAGCTACTTATCCA-TTTATGACCAGCCTGTTC 885
||||||||||||||| || ||||||||||||| |||| || |||||||||| |||||||
Sbjct 680 CTTCATGAGCTTCAAGAA-AATGAAGGAAGCTT-TTATTCAATTTATGACCAACCTGTTC 737
Query 886 TTCCTCTTCAGGATCCTGTAGTGGATTCGATTAAGAA-TGCAGTGGACAGGCTAACACAT 944
|||| ||||||||||| || || || | || || || ||| ||||| | | |||| | |
Sbjct 738 TTCCGCTTCAGGATCCAGTGGTTGAAGCCATAAA-AACTGCGGTGGAAAAGTTAAC-CTT 795
Query 945 -TCAACAAACTTTCTT-AATTTCATGGCTCAACATGCT-TTAATCATGCAAGACGATGAA 1001
|| || || |||| | || ||| |||| || |||||| ||| |||||||||| |||
Sbjct 796 CTCGACGAA-TTTCCTCAACTTCTTGGCACAGCATGCTCTTA-TCATGCAAGATGATTTG 853
Query 1002 GACCTACTAATGCTTCCTCCAGACGAG-CAAGCGGAAAAAGAAGAAGGAAGATATCACTT 1060
| | | || ||| |||| || ||| || | | | || | || | | ||
Sbjct 854 G---TG--A---CT-CCTTCAGAGGATACAATCG-ATGA-GCGGACTTACCATTTTAATT 902
Query 1061 CATGTCACTATTGTTAAACTTGGCCAACACGTTTCTT-TATATGGTCAATACATATATCA 1119
||| | ||| || || || || ||||| ||| || || |||||||| || |||||||
Sbjct 903 CAT-T-ACTCCTG--AATCTAGGA-AACACATTT-TTGTACATGGTCAACACTTATATCA 956
Query 1120 TTGTTCCAACAGCTGATGATTACTCTATGAGCCTTGGAGCAGCCGCAACGGTTTGTGGTG 1179
| ||||| ||||| || || || || |||||||||||||| || ||||||||||||||||
Sbjct 957 TCGTTCCGACAGCGGACGACTATTCGATGAGCCTTGGAGCTGCAGCAACGGTTTGTGGTG 1016
Query 1180 TTGTTATCGG-TGCTATGGCCGTTGCTCA-GCTCTTCTCTTCCGTTTACTTCAGTGCTTG 1237
|||| || || | ||||||| || ||||| | | ||||| || ||||| ||||| || ||
Sbjct 1017 TTGTCATTGGAT-CTATGGCTGTGGCTCAAG-TATTCTCATCGGTTTATTTCAGCGCATG 1074
Query 1238 GTCCAATAAATCTTACTTCAAGCCGCTTATATTTAGTAGCATCGTTCTTTTCTTTGGGAA 1297
|||||| |||||||||||||| || ||| | ||||| ||||||| || || | | ||||
Sbjct 1075 GTCCAACAAATCTTACTTCAAACCTCTTGTGTTTAGCAGCATCGCACTCTT-TATCGGAA 1133
Query 1298 -CTTGTTATATGCTTTGGCTTATGACTTT-AATTC-ATTAGCACTTCTCTTGATT-GGTC 1353
|||| | ||||| ||||||||||| | ||||| || ||| ||||| || | | || |
Sbjct 1134 ACTTGATGTATGCGTTGGCTTATGA-TGCCAATTCCAT-AGCGCTTCTATT-ACTCGGCC 1190
Query 1354 G-GCTTTTTTGTGGATTTGGTTCAGCGAGAGCAGTGAACCGGAGATATATAAGCGATTGT 1412
| | | | |||||| || || ||||| ||||| || |||||||||||||| |||||||||
Sbjct 1191 GTG-TCTGTTGTGGGTTGGGATCAGCAAGAGCTGTTAACCGGAGATATATCAGCGATTGT 1249
Query 1413 GTGCCGCTGAAAATCCGAATGCAGGCTTCAGCGGGTTTTGTTAGTGCAAGTGCTCTAGGA 1472
||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 1250 GTGCCTTTGAGAATCCGAATGCAGGCATCAGCGGGTTTTGTGAGTGCAAGTGCTCTTGGA 1309
Query 1473 ATGGCTTGTGGTCCTGCTCTTGCTGGCTTGTTGCAAA-CTGATTTCAAGATCAAAAATGT 1531
||||||||||||||||| ||||| || || | |||| | ||| |||| | | || ||
Sbjct 1310 ATGGCTTGTGGTCCTGCGCTTGCCGGTTTACTCCAAATCAAATT-CAAGTTTTACAA-GT 1367
Query 1532 T-ACATTTAACCAAGATACGTTACCTGGTTGGGTTATGGCTGTTGCTTGGCTATTGTACT 1590
| |||||||||||| ||| || || || |||||||||||||| |||||||| || || |
Sbjct 1368 TTACATTTAACCAATCTACTTTGCCGGGGTGGGTTATGGCTGTGGCTTGGCTGTTCTATT 1427
Query 1591 TAGTCTGGTTA-GCTATTTC 1609
| || ||| || || |||||
Sbjct 1428 TGGTATGGCTATGC-ATTTC 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91530858735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5