BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11860.1
Length=2344
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490003 jgi|Araly1|490003|fgenesh2_kg.6__3137__AT4G11860.1 3578 0.0
> Ahg490003 jgi|Araly1|490003|fgenesh2_kg.6__3137__AT4G11860.1
Length=2305
Score = 3578 bits (1937), Expect = 0.0
Identities = 2191/2311 (95%), Gaps = 28/2311 (1%)
Strand=Plus/Plus
Query 26 AAAAAATAAAATTTCTTCGGAATTTCCAATAATCTGTCTCTCTTCTTCTTCGATCGAAAA 85
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 AAAAAAAAAAATTTCTTCGGAATTTCCAATAATCTGTCTCTCTTCTTCTTCGATCG-AAA 59
Query 86 TTTGACtttttttcgaatttgttttttCATTAGCTTTGGTTGATATCATCATCGTCAATG 145
|||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 60 TTTGAC--TTTTTCGAATTTGATTTTT-ATTAGCTTTGGTTGAGATCATCATCGTCAATG 116
Query 146 GCGACCGCTTCATCTTCAGAATCTCCGAGCGAAGAAACGCAGACGAATCAAGAAGCGATG 205
|||||||||||||||||||||| ||| | |||||||||||| ||||||||||||||||||
Sbjct 117 GCGACCGCTTCATCTTCAGAATATCCTAACGAAGAAACGCATACGAATCAAGAAGCGATG 176
Query 206 CAGCAGCAAGA--T-TTACCGAAGG-AA--AC---TACTACGGA-G--GAGGAGATTTTG 253
||||||||||| | || || |||| || || ||||||||| | ||||||||||||
Sbjct 177 CAGCAGCAAGATTTGTTGCCAAAGGAAACTACTAATACTACGGAGGAAGAGGAGATTTTG 236
Query 254 TATAAGACGAAATCGATTCAGTTCCTTGGAAGAACCACACCTATCATTCTCCAGAACGAA 313
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 237 TATAAGACGAAATCGATTCAGTTCCTTGGACGAACCACACCTATCATTCTCCAGAACGAA 296
Query 314 AATGGACCTTGTCCTTTGTTAGCCATTTGTAATGTGCTTCTCTTGAGAAACAACTTGAAT 373
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 297 AATGGACCTTGTCCTTTGTTAGCCATTTGTAATGTTCTTCTCTTGAGAAACAACTTGAAA 356
Query 374 CTAAATCCTGACTGTTATGAGGTTTCTCAAGAGAGATTGATGTCCCTCGTGGTCGACAGA 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTAAATCCTGACTGTTATGAGGTTTCTCAAGAGAGATTGATGTCCCTCGTGGTCGACAGA 416
Query 434 CTCATTGATTCCAATAGTAAAGTCAATAACAAAGATGAAGGATATATTGAGAATCAGCAA 493
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CTGATTGATTCCAATAGTAAAGTCAATAACAAAGATGAAGGATATATTGAGAATCAGCAA 476
Query 494 CAGAACATTGCTGATGCAATTGATCTTCTTCCACGCCTTACTACTGGAATTGATGTCAAT 553
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 477 CAGAACATTGCTGATGCAATTGATCTTCTTCCACGACTTACGACTGGAATTGATGTCAAT 536
Query 554 ATTAAATTCAGGAGGATTGATGATTTTGAGTTCACACCTGAATGTGCAATATTTGATTTA 613
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 537 ATTAAATTCAGGAGGATTGATGATTTTGAGTTCACCCCTGAGTGTGCAATATTTGATTTA 596
Query 614 CTTGACATTCCCTTATATCATGGATGGATAGTTGATCCTCAGGATGTTGAAGCAGCTAAT 673
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 597 CTTGACATTCCCTTATATCATGGATGGATAGTTGATCCCCAGGATGTTGAAGCAGCTAAT 656
Query 674 GCAATTGGTAGCAAATCGTATAATGCTCTTATGGGTGAGCTAGTTGCACTGGAGACACAG 733
|||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 657 GCAATTGGCAGCAAGTCGTATAATGCTCTAATGGGTGAGCTAGTTGCCCTGGAGACGCAG 716
Query 734 AATGTAGAGGCTCAAGGCGATCAAAATCCCGGAGAAGATTCTGTTGATTTTGCTGCGGCA 793
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AATATAGAGGCTCAAGATGATCAAAATCCCGGAGAAGATTCTGTTGATTTTGCTGCGGCA 776
Query 794 ACTACTGCAGTTTTAGGGGTTCCTTCACCTTGTCTTTCGAAAACAAGATCTTTTGATGAT 853
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 777 ACTACTGCAGCTTTAGGGGTTCCTTCACCATGTCTTTCGAAAACAAGATCTTTTGATGAT 836
Query 854 TCTCCACCTGCGGCTGCAGAGCTTCGTAGAATGAGAAAGGGGGATCTTGAAGAAGAAACA 913
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 837 TCTCCACCTGCGGCTGCAGAGCTTCGCAGAATGAGAAAGGGGGATCTTGAAGAAGAAACA 896
Query 914 GAGTTGTTGCAAGCCTTGCAGTTATCACAGGGGCAGGGGAATGATCCAACTCCAAACACT 973
||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 897 GAGTTGTTGCAAGCCTTGCAGTTATCACAGGAGCAGGGGAATGATTCAATTCCAAACACT 956
Query 974 AACGGAGACTCAACCAATCAAGATTCTGCGTTCACATTTTCAGATGCGAGTCCAACTAGC 1033
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 957 AATGGAGACTCAACCAATCAAGACTCTGCGTTCACATTTTCAGATGCAAGTCCAACTAGC 1016
Query 1034 ACCCATATTACTAATATCAGTCAGCTAGACCAGTTCAAAACTGATGATGATAAAGCATCA 1093
|||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1017 ACCCATGGTACTAATATCAGTCAGCTAGACCAGTTTAAATCTGATGATGATAAAGCATCA 1076
Query 1094 GAAAATGATGGGAATATGATCAAAGTTGGGAAATTTCCGACAACGATTACAACTAAAAGT 1153
||||||||||| |||||||||||||||||| |||||| |||| ||||||||| |||||||
Sbjct 1077 GAAAATGATGGCAATATGATCAAAGTTGGGGAATTTCAGACACCGATTACAATTAAAAGT 1136
Query 1154 GAGGATCTTAACCATGATCAATTATCTTCTAAGCAATCTGGAGGTGAAACGGCTTGTGAT 1213
|||||||| |||||||||||||||||||| |||||| |||||| ||||||||| ||||||
Sbjct 1137 GAGGATCTCAACCATGATCAATTATCTTCGAAGCAAACTGGAGTTGAAACGGCCTGTGAT 1196
Query 1214 GTTGAGAACGTGAGTAGCAGCAAAGAGGCCATTGTCGATGTAACTTCTTCTGAGGCACTC 1273
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct 1197 GTTGAGAACGTGAGTAGCAGTAAAAAGGCCATTGTCGATGTAACTTCTTCTGAGGCGCTC 1256
Query 1274 TCTGTGGATAAGGGTAATCTGGAGTCAGCGAAAAGTGAAAGCAGTTCTGAGAGTGTACTC 1333
||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |||||
Sbjct 1257 TCTGTGGATAAGGCTAATCTGGATTCAGCGAAAATTGAAAGCAGTTCTGAGAGTCTACTC 1316
Query 1334 AAGTCTGATGCAGCTTCTATTGATCCAGATTTGAGTTGCAGATCCCAGCATGATGATGCA 1393
|||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |
Sbjct 1317 AAGTCTGATGCAGCTTCTGTTGATCCAGATTTTAGTTGCAGATCCCAGCATGACGATGTA 1376
Query 1394 CCCAACGCTTTTATCC-CACCTGTATCTACCGATGAACCTATGTACGAAGGTGAGGAATG 1452
||||| || |||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1377 CCCAATGCGTTTA-CCTCACCTGTACCTACCGATGAACCTATGTACGAAGGTGAGGAATG 1435
Query 1453 TGTAAACACAGTGCCTCCAGTTTGTGCAGACAAAGAACCCGTTTATGAAGGTGAGTCACT 1512
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1436 TGTAAACACAGTGGCTCCAGTTTGTGCAGACAAAGAACCTGTTTATGAAGGTGAGTCACT 1495
Query 1513 TCTTGGTAAAAGGGTTGAGAAGGATGTTGGTGATTGTTCTTCTGAAGGGAGGGCTACGGA 1572
||| ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||
Sbjct 1496 TCTCGGTAAAAGGGTTGAGAAGGATGTGGGTGATTGTTCTTCTGAAGGAAAGGCTACGGA 1555
Query 1573 TGGGCTCACAGCAGAAGAAGGTGAACTAATCAGGAACTTTATGAAGAATAGTGCAAGTCA 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 TGGGCTCACAGCAGAAGAAGGTGAACTAATCAGGAACTTTATGAAGAATAGTGCAAGTCA 1615
Query 1633 ATTAACCTTTTGTGGACTCTTTCGCTTGCAAGAAGGCCTCAAAGAACGTGAACTCTGTGt 1692
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1616 ATTAACCTTTTGTGGACTCTTTCGCTTGCAAGAAGGCCTTAAAGAACGTGAACTCTGTGT 1675
Query 1693 ttttttCCGGAACAATCATTTCTGCACCATGTTCAAGTATGAAGGTGAACTTTATCTTTT 1752
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TTTCTTCCGCAACAATCATTTCTGCACCATGTTCAAGTATGAAGGTGAACTTTATCTTTT 1735
Query 1753 GGCTACAGATCAAGGTTACCTGAATCAGCCTGATTTGGTTTGGGAAAAACTAAACGAGGT 1812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 GGCTACAGATCAAGGTTACCTGAATCAGCCTGATTTGGTTTGGGAAAAACTAAACGAGGT 1795
Query 1813 TAATGGTGACACTGCATTCATGACTGCTACCTTCAAGGACTTCACGATCGACAGCAGCAC 1872
|||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1796 TAATGGCGACACTGCATTCATGACTGCTACCTTCAAGGACTTCAAGATTGACAGCAGCAC 1855
Query 1873 AGGTGGTGCAAGTGGCACATGGGATGAACGAAACGCAGTCACAAATACTGCTGATTATCT 1932
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 AGGTGGCGCAAGTGGCACATGGGATGAACGAAACGCAGTCACAAATACTGCTGATTATCT 1915
Query 1933 TGCCAGCATCAACAATGTAGCGGATGCAGGCATAGATGTCAATTCTGATCTGCAACTAGC 1992
|||||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||||
Sbjct 1916 TGCCAGCATCAACAATGTAGCGGACACAGACATAGATGTCAACTCTGATCTACAACTAGC 1975
Query 1993 AATAGCTTTGCAACAACAAGAGTTTGAGGACCAGAGCCCACGTAGTAACCCAACTCCACA 2052
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1976 AATAGCTTTGCAACAACAAGAGTTTGAGGACCAGAGCCCACGTAGCAACCCAACTCCACA 2035
Query 2053 ACCAACTAGCGTTGCTGCCTCACGATTGGTCACTGGTCCACAGGTACCAAGGAGCAGCCA 2112
|||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 ACCAACAAGTGTTGCTACCTCACGATTGGTCACTGGTCCACAGGTACCAAGGAGCAGCCA 2095
Query 2113 CAGGCCATCATCAGCTGC-G--TCTTCGAGACACGACGGCAAATCCCCTAAAGATAAAGA 2169
|||||||||||||||||| | ||||||||||||||| |||||||||| |||||||||||
Sbjct 2096 CAGGCCATCATCAGCTGCAGCGTCTTCGAGACACGACAGCAAATCCCCAAAAGATAAAGA 2155
Query 2170 TAGCAAATGTAGAATCATGTAAATCCTCATTTCACTTATGTAAATTTCCAACTTTTTCTT 2229
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 2156 TAGCAAATGTAGAATCATGTAAATCTTCATTTCACTTATGTAAATTTCCAACTTTTTAT- 2214
Query 2230 ATTCCCTAACTAATTTTAATCCTT-AAAAGCTTTTTGGTTTTAACAAAAAA-----TAAA 2283
| |||||||||||||||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 2215 ACTCCCTAACTAATTTTAATCCTTTAAAAGCATTTTGGTTTTAACAAAAAAAAAACTAAA 2274
Query 2284 CTGTAATTGCGCTTTGACTAAACTATTTTTT 2314
|||||||||||||||| ||||||||||||||
Sbjct 2275 CTGTAATTGCGCTTTGCCTAAACTATTTTTT 2305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88293187910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5