BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11880.1
Length=1013
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490004 jgi|Araly1|490004|fgenesh2_kg.6__3138__AT4G11880.1 1003 0.0
> Ahg490004 jgi|Araly1|490004|fgenesh2_kg.6__3138__AT4G11880.1
Length=760
Score = 1003 bits (543), Expect = 0.0
Identities = 689/756 (91%), Gaps = 23/756 (3%)
Strand=Plus/Plus
Query 44 ctccctcatcgttctctTAGAGACACAAATCAATCAAAAGCATACATAAAAACAAAGGGG 103
||| ||| || ||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 23 CTCTCTC-TCTTTCTCTTAGAGGCACAAATCAATCAAAAGCATACAGCAAAACAAA-GGG 80
Query 104 GGTTAAT-TAAAT-TAGAAGAATGGTGAGGGGAAAGACAGAGATGAAGAGGATAGAGAAC 161
|| |||| | | | | |||||||||||||||||||||||||||||||||||| |||
Sbjct 81 GG-TAATCTTTTTCTCCTATAATGGTGAGGGGAAAGACAGAGATGAAGAGGATAGAAAAC 139
Query 162 GCAACGAGCAGGCAAGTGACTTTCTCAAAAAGAAGAAATGGACTTTTGAAGAAAGCTTTT 221
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 140 GCGACGAGCAGGCAAGTGACTTTCTCCAAGAGAAGAAATGGACTTTTGAAGAAAGCTTTT 199
Query 222 GAATTATCAGTCCTTTGTGATGCTGAAGTTGCCCTAATCATCTTCTCTCCTAGAGGCAAA 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 GAATTATCAGTCCTTTGTGATGCTGAAGTTGCCCTAATCATCTTCTCTCCTAGAGGCAAA 259
Query 282 CTCTATGAGTTCTCTAGCTCCTCCAGTATACCTAAAACAGTAGAAAGATATCAAAAGCGA 341
|||||||| ||||||||||| ||||| ||| | ||||| |||||| ||||||||||||||
Sbjct 260 CTCTATGAATTCTCTAGCTCATCCAGCATAACAAAAACGGTAGAACGATATCAAAAGCGA 319
Query 342 ATACAAGATCTCGGGTCTAACCATAAGAGAAATGATAATTCACAGCAATCGAAGGACGAA 401
|||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |||
Sbjct 320 ATACAAGATCTCGGGTCTAACCATAAGAGAGATGATAACTCACAGCAGTCGAAGGATGAA 379
Query 402 ACCTATGGCTTGGCGAGAAAGATCGAACATTTGGAGATTTCGACACGAAAAATGATGGGA 461
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 380 ACCTATGCCTTGGCGAGAAAGATCGAACATTTGGAGATTTCGACACGAAAAATGCTGGGA 439
Query 462 GAAGGACTTGACGCATCTTCTATAGAAGAGTTACAACAATTGGAGAACCAGTTGGACAGA 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GAAGGACTTGACGCATCTTCTATAGAAGAGTTACAACAATTGGAGAACCAGTTGGACAGA 499
Query 522 AGCTTAATGAAAATAAGAGCCAAAAAGTACCAGTTATTACGAGAAGAAACTGAGAAATTA 581
||||||||||||||||||||||||||||| || |||||||| ||||||| |||||| |||
Sbjct 500 AGCTTAATGAAAATAAGAGCCAAAAAGTATCAATTATTACGCGAAGAAATTGAGAAGTTA 559
Query 582 AAAGAAAAGGAGAGGAACCTCATTGCAGAAAATAAAATGCTGATGGAGAAGTGTGAGATG 641
|||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 560 AAAGAAAAGGAGAGAAACCTCATTGCACAAAATAAAATGCTGATGGAGAAGTATGAGATG 619
Query 642 CAAGGAAGAGGAATAATAGGAAGAATatcatcatcatcatcaacatcaGAACTGGATATA 701
||||||||||||||||||| ||||| |||| | ||| |||||||| |||
Sbjct 620 CAAGGAAGAGGAATAATAGCAAGAA---CATC--C-TCA---------GAACTGGACATA 664
Query 702 GATGACAATGA--A-ATGGAAGTGGTGACTGATTTGTTCATTGGACCTCCTGAGACTCGA 758
||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GATAACAATGATGATATGGAAGTGGTGACTGATTTGTTCATTGGACCTCCTGAGACTCGA 724
Query 759 CACTTCAAAAAGTTTCCTCCTTCAAACTAACATATA 794
|||| |||||||||| ||||| |||||||||| |||
Sbjct 725 CACTCCAAAAAGTTTTCTCCTCCAAACTAACACATA 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37665441996
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5