BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11890.3
Length=1237
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895387 jgi|Araly1|895387|Al_scaffold_0006_3383 1459 0.0
> Ahg895387 jgi|Araly1|895387|Al_scaffold_0006_3383
Length=1068
Score = 1459 bits (790), Expect = 0.0
Identities = 978/1070 (91%), Gaps = 7/1070 (1%)
Strand=Plus/Plus
Query 24 ATGGCCGTTACTTCGCTTCTCGATACCGTTTTCCGACGTAG--A-AAGAAGAAGTCTACT 80
|||||| ||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 1 ATGGCCCTTACTTCGCTTCTCGATACCGTTTTCCGACGAAGAAAGAAGAAGAAGTCTACT 60
Query 81 GAGTTT-ATAAGCTATACAGCAGTTTTCGAATTCGACTTGGACACCATTAAAGCTGCAAC 139
|||||| | |||| || | ||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 61 GAGTTTGA-AAGCAATTCTGCAGTTTTCGAGTTCGACTTCGACACTATTAAAGCTGCAAC 119
Query 140 AAATGATTTCTCAGAACTGGTTGGTCGTGGCGGATTTGGTTTTGTTTACAAGGGTAGGCT 199
|||||| |||||| |||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 120 AAATGAGTTCTCACAACTGGTTGGTCATGGCGGATTTGGTTCTGTTTACAAGGGTAGGCT 179
Query 200 TCAAAATGGACAAGAAATAGCAGTCAAGATTTTGTCTACAAGTTCAATTAGAACTGAGAG 259
||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 180 TCAAAGTGGACAAGAAATAGCAGTCAAGATTTTGTCTAAAAGTTCAATAAGAACTGAGAC 239
Query 260 ACAGTTTCATAACGAACTTATTATTTTGTCTAAGCTTAAACACAAGAATCTGATCAATCT 319
|||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||| |||
Sbjct 240 ACAGTTTCATAATGAACTTAATATTTTGTCAAAGCTTAGGCACAAGAATCTGATCAGTCT 299
Query 320 TCTTGGTTTCTGCACTAAACGAGACCAACATGGTCTTGTTTACGAGTTCATGCCTAACTC 379
||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||
Sbjct 300 TCTTGGTTTCTGCACTAAACGAGACCAACATTGTCTTGTTTATGAGTTCATGCCCAACTC 359
Query 380 AAGCCTCGATTGTTTTATACTCGACCCACACAGAGCTGCTCAGCTAAATTGGGAGATGTG 439
|||||||||||| ||| ||||||| ||||| |||||| ||||||||| ||||||||| ||
Sbjct 360 AAGCCTCGATTGCTTTCTACTCGATCCACATAGAGCTTCTCAGCTAAGTTGGGAGATATG 419
Query 440 CCGAAACATTATTGATGGCATAGCTCGAGGGCTACGTTACCTTCATGAAGAATCCGGGTT 499
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 420 TCGAAACATTTTTGATGGCATAGCTCGAGGGTTACGTTACCTTCATGAAGAATCCGGGTT 479
Query 500 ATGGGTCGTTCACCGCGACATTAAACCTGGAAACATTCTATTGGATTCAGATTTGAAACC 559
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 ATGGCTCGTTCACCGCGACATTAAACCTCGAAACATTCTATTGGATTCAGATTTGAAACC 539
Query 560 GAAAATAGTGGGATTTGAATTGGCGAGGACGATGCAACAAGGTGAAAACGCAGCTGAAAC 619
|||||| ||||| |||||||||||||||| |||||||||| ||||||||| |||||| |
Sbjct 540 GAAAATCGTGGGGTTTGAATTGGCGAGGATGATGCAACAATGTGAAAACGAAGCTGAGTC 599
Query 620 AACTGAAATTGTCGGTACCGTAGGGTATTTAGATCCGGAGTACATACGAAGCGGACGTGT 679
|||| ||||||||||||| |||||||||||||||| |||||| | |||||||| |||||
Sbjct 600 GACTGTAATTGTCGGTACCATAGGGTATTTAGATCCAGAGTACCTGCGAAGCGGGCGTGT 659
Query 680 TTCCGTCAAATCTGACGTTTATGCCTTTGGAGTTACAATCTTGACGATCATTAGCAGAAG 739
||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 TTCTGTCAAATCTGATGTTTATGCCTTTGGAGTTACAATCTTGACGATCATTACCAGAAG 719
Query 740 GAAGGCTTGGAGTGTGGACGGAGACTCTCTAATCAAATATGTTAGGAGATGCTGGAACAG 799
||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 720 GAAGGCTTGGAGTGTTGACGGAGACTCTCTAATCGAATATGTTATGAGATGCTGGAACAG 779
Query 800 AGGAGAAGCCATAGATGTGATCCATGAAGTGATGAGGGAAGAAGAAAGAGAATATTCGAT 859
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 780 AGGAGAAGCCATAGATGTGATCCATGAAGTGATGAGGGAAGAAGAAAGAGAAGATTCGAT 839
Query 860 AAGCGAAATCTTGAGATACATTCACATTGCTTTGCTATGTGTGGATGAGAATGCTGAGAG 919
|||||||||||||||||||||||||||||||||| ||||| | ||||| ||||| ||||
Sbjct 840 AAGCGAAATCTTGAGATACATTCACATTGCTTTGTTATGTATCGATGAAAATGCAGAGAC 899
Query 920 AAGGCCGAATATTGATAAAGTTCTGCATTGGTTTAGTTGTTTCTCTACTCCTTTACCTGA 979
|||||||| |||||||| |||||| || |||||||||||| ||||||||||||| || ||
Sbjct 900 AAGGCCGAGTATTGATAGAGTTCTTCACTGGTTTAGTTGTATCTCTACTCCTTTGCCGGA 959
Query 980 TCCAAC-ATTTGGTAATAGATTTCTTGTAGAGGAAGAAACAAATTGGCCCTGGTCGCCAT 1038
||||| | | |||||| ||||||||| | |||||||||| |||||||||||||| | |
Sbjct 960 ACCAACCAGT-GGTAATCGATTTCTTGGAAAGGAAGAAACCAATTGGCCCTGGTCACTGT 1018
Query 1039 CTTTATCTCCTGGTCACAGCTCTGTCACGTCACCCATATCTTCACGTTAA 1088
|| ||||||| || || |||||||| ||||||||||||||||||||||||
Sbjct 1019 CTCTATCTCCCGGACATAGCTCTGTTACGTCACCCATATCTTCACGTTAA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46204975404
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5