BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11900.1
Length=2579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895388 jgi|Araly1|895388|Al_scaffold_0006_3384 2279 0.0
> Ahg895388 jgi|Araly1|895388|Al_scaffold_0006_3384
Length=2421
Score = 2279 bits (1234), Expect = 0.0
Identities = 1886/2184 (86%), Gaps = 112/2184 (5%)
Strand=Plus/Plus
Query 449 AACAGTTTGGTCGACCGGTGTTAACTCTAGTATGAGCA-AGGATGTTCAAGCTGTTCTGT 507
|||| ||||||||||||||||||| ||||||| ||||| | ||||||||||||||||||
Sbjct 297 AACATTTTGGTCGACCGGTGTTAATTCTAGTAGGAGCACA-GATGTTCAAGCTGTTCTGC 355
Query 508 TTGATAGTGGTAATCTAGTATTGAGAGATGGGCCTAATTCTTCTGCAGCTGTGTTGTGGC 567
|||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 356 TTGATAATGGTAATCTAGTATTGAAAGATGGGCCAAATTCTTCTGCAGCTGTGTTGTGGC 415
Query 568 AGAGTTTTGATCATCCCTCGGATACTTGGCTTCC-TG-G-------C-GG--T-A-AA-A 612
|||||||||||||||||||||||||||||||||| | | | || | | || |
Sbjct 416 AGAGTTTTGATCATCCCTCGGATACTTGGCTTCCAGGAGCTAAAATCAGGTTTAACAACA 475
Query 613 TCAGATTAGGAAGCCAACTTTTCACTTCTTGGGAGA-GCTTGATAGATCCATCACCGGGT 671
||| | | |||||||||| | |||| |||| ||| | |||||| | ||||||||||||||
Sbjct 476 TCAAACTGGGAAGCCAACGTCTCACGTCTT-GGAAAGGCTTGACAAATCCATCACCGGGT 534
Query 672 CGATACTCTCTCGAGTTTGACCCTAA-AC--TACACTCACTCGTCACGGTTTGGAATAGA 728
||||||||||||||| |||||||||| || |||||| ||| | |||||||||||| ||
Sbjct 535 CGATACTCTCTCGAGGTTGACCCTAATACAACACACTCCCTCATAACGGTTTGGAATGGA 594
Query 729 TCAAAGTCATATTGGTCCAGTGGGCCATTGTATGATTGGCTTCAAAGTTTCAAGGGATTT 788
|| ||||||||||||||||| |||||| || || | | || || ||| || | | |
Sbjct 595 TCTAAGTCATATTGGTCCAGCGGGCCA-TG--GGA-T-G-ATC-AA-TTT--AGAG-TCT 643
Query 789 CCAGAATTGCAAGGTACTAAGTTGAGTTTCACATTGAATATGGATGAGTCTTACATCACC 848
||| ||| | || | |||||||||| |||||| ||||||||||||||||||||
Sbjct 644 CCA-TTTTG---GCTATTTCCTTGAGTTTCAAATTGAACCTGGATGAGTCTTACATCACC 699
Query 849 TTTTCAGTAGATCCCCAGAGCAGATATCGTTTGGTCATGGGTGTTTCGGGGCAGTTCATG 908
| ||||| ||| | | |||| ||||||||||||||||| |||||| |||| |||||||
Sbjct 700 TATTCAGCAGAAAACTATAGCACATATCGTTTGGTCATGGATGTTTCCGGGCGGTTCATG 759
Query 909 CTGCAAG-TTTGGCACGTTGACTTACAGTCGTGGCGTGTGATATTGTCTCAACCTGATA- 966
||||| | ||| | |||||| | |||| |||| ||| ||||| ||||||||| | |
Sbjct 760 CTGCACGTTTTCTTA-GTTGACATCCAGTTGTGGGGTGCGATATGGTCTCAACC-AAGAG 817
Query 967 ATAGATGTGAC-GTTTATAACAGTTGTGGATCATTTGGGATTTGCAATGAA-AACCGAGA 1024
||| ||||| | |||||||| ||||||||| |||||||||||| ||||| || || ||
Sbjct 818 ATACATGTG-CGGTTTATAATTCTTGTGGATCGTTTGGGATTTGCGATGAACAAGCG-GA 875
Query 1025 GCCT-CCCCCATGTAGATGTGTTCCTGGTTTCAAACGAGAATTTTCCCAAGGATCTGATG 1083
| | ||| ||||||||||||||||||||||||| || | ||| || | || |
Sbjct 876 ---TACACCC-TGTAGATGTGTTCCTGGTTTCAAACAAGCA-TTT-----GG--C-GAGG 922
Query 1084 ACTCGAATGATTACTCTGGTGGTTGTAAAAGGGAAACATACCTTCATTGTTATAAGCGAA 1143
|||||||||||||||||||||||||||||||||||| | | ||||| ||| | ||| |||
Sbjct 923 ACTCGAATGATTACTCTGGTGGTTGTAAAAGGGAAATAAATCTTCAATGTGACAAGGGAA 982
Query 1144 ATGACGAGTTTCTTCCTATTGAAAACATGAAATTAGCCACTGATCCAACAACAGCATCGG 1203
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 983 ATGACGAGTTTTTTCCTATTGAAAACATGAAATTAGCCACTGATCCAACAACAACATTGG 1042
Query 1204 TCTTGACATCCGGGACTT-TTAGGACG-TGTGCCTCACG-TTGCGTAGCTGATTGTTCTT 1260
||||||| | | ||| ||| || | ||||||||| | |||| ||||| |||||||||
Sbjct 1043 TCTTGAC-GGCAAGTCTTGTTACGA-GCTGTGCCTCA-GCTTGCCTAGCTAATTGTTCTT 1099
Query 1261 GCCAAGCGTACGCAAATGATGGAAACAAGTGTTTGGTGTGGACAAAAGATGCTTTCAATC 1320
|||| || |||||| |||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1100 GCCAGGCCTACGCATATGATGGAAACAAGTGTTTGATGTGGACAAGAGATGCTTTCAATC 1159
Query 1321 TGCAACAACTCGATGCAAAT-----A-AGGGACACACATTCTTT-CTTAGACTTGCATCT 1373
|||||||||| ||||||||| | ||||||||| || ||| ||||||||||
Sbjct 1160 TGCAACAACTTGATGCAAATAACACAGAGGGACACA-TTTTTTTCCTTAGACTTG----- 1213
Query 1374 TCAAACATCTCAACTGCAAACAACCGAAAAACAGAACA-TTCTAAAGGCAAAAGCATTGT 1432
| | || | ||||||| || |||||| | | |||||||| || ||| |||||
Sbjct 1214 -C---C-GCT----T-CAAACAAGGGAGAAACAG-AGAGTTCTAAAGTCAGAAGAATTGT 1262
Query 1433 GTTA-CCACTTGTACTAGCATCACTTGTAGCAACTGCTGCATGTTTCGTTGGTTTGTATT 1491
|||| || | |||||| ||||||| ||||| | ||||| | |||||||||||||||||
Sbjct 1263 GTTACCCGC-TGTACTCTCATCACTAATAGCAGCCGCTGCGTTTTTCGTTGGTTTGTATT 1321
Query 1492 GTTGCATTTCTTC-aagaataagaagaaaaaagaa-acaaagagacgaaaaaCATAGCAG 1549
||| ||||| || |||| |||||| |||||||| | |||||||| ||||||| |||||
Sbjct 1322 GTTATATTTC-TCAAAGAGGAAGAAG-AAAAAGAACAAAAAGAGACAAAAAACAGAGCAG 1379
Query 1550 AGAGCTATTAGAAGGTGGCCTAATTGATGATGCTGGAGAAAATATGTGTTACCTAAATCT 1609
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1380 AGAGCTATTAGAAGGTGGCCTAATTGATGATGATGGAGAAAATATGTGTTACCTAAATCT 1439
Query 1610 ACATGACATAATGGTTGCAACAAATTCTTTCTCT-AGGaaaaaaaaGTTAGGAGAAGGTG 1668
|||||||| |||| ||||||||||||||||||| ||| |||| ||| |||| ||||| |
Sbjct 1440 GCATGACATTATGGCTGCAACAAATTCTTTCTCTGAGG-AAAATAAGCTAGGCGAAGGCG 1498
Query 1669 GTTTTGGTCCAGTCTACAAGGGAAAGCTACCAAATGGGATGGAAGTGGCAATCAAAAGGC 1728
|||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||
Sbjct 1499 GTTTTGGTCCAGTCTACAAGGGAATGCTACTGAATGGGATGGATGTGGCCATCAAAAGGC 1558
Query 1729 TTTCaaaaaaaTCAAGTCAAGGTCTGACAGAGTTCAAGAATGAAGTTGTTCTGATCATAA 1788
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1559 TTTCAAAAAAATCAAGTCAAGGTCTGACAGAGTTCAAGAATGAAGTCGTTCTGATCATAA 1618
Query 1789 AGCTTCAACACAAGAACTTGGTGAGGCTTTTAGGGTATTGTGTTGAAGGCGATGAGAAGC 1848
|||||||||| | |||||||||||| |||||||| ||||||||||| ||||| ||||| |
Sbjct 1619 AGCTTCAACATAGGAACTTGGTGAGACTTTTAGGATATTGTGTTGAGGGCGACGAGAAAC 1678
Query 1849 TCCTAATTTATGAGTACATGTCGAATAAGAGCCTTGATGGTTTACTCTTTGATTCTTTAA 1908
| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1679 TTCTAATTTACGAGTACATGTCGAATAAGAGCCTTGATGTTTTACTCTTTGATTCTTTAA 1738
Query 1909 AGTCTAGGGAATTGGATTGGGAGACACGTATGAAAATAGTAAATGGGACGACAAGAGGAC 1968
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1739 AGTCTAGGGAATTGGATTGGGAGACGCGTATGAAAATAGTAAATGGGACGACAAGAGGAC 1798
Query 1969 TTCAATATCTGCATGAGTACTCACGTCTCAGGATCATTCACCGAGATCTTAAGGCAAGCA 2028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 TTCAATATCTGCATGAGTACTCACGTCTCAGGATCATTCACCGAGATCTTAAGGCAAGCA 1858
Query 2029 ATATTCTACTTGACGATGAGATGAATCCTAAGATCTCAGATTTTGGAACCGCAAGGATTT 2088
||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1859 ATATTCTTCTCGACGATGAGATGAATCCTAAGATCTCAGATTTTGGAACCGCCAGGATCT 1918
Query 2089 TTGGTTGCAAGCAAATCGATGATAGCACCCAAAGAATCGTCGGGACAT-T--CGGCTATA 2145
||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||
Sbjct 1919 TTGGTTGCAAGCAAATCGATGATAGCACCCAAAGAATCGTCGGAACTTGTAACGGCTATA 1978
Query 2146 TGTCACCGGAATATGCATTAGGTGGAGT-GATTTCAGAGAAATCGGATATATACAGCTTT 2204
|||||||||||||||||||||| || || |||||||||||||||||||||||| ||||||
Sbjct 1979 TGTCACCGGAATATGCATTAGGCGG-GTTGATTTCAGAGAAATCGGATATATATAGCTTT 2037
Query 2205 GGAGTGTTGTTATTGGAGATCATATCGGGTAAAAAGGCGACAAGGTTTGTTCATAACGAC 2264
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 2038 GGAGTGTTGTTATTGGAGATCATATCAGGCAAAAAGGCGACAAGGTTTGTTCACAACGAC 2097
Query 2265 CAAAAACACAGCCTTATTGCTTATGAATGGGAATCTTGGTGTGAAACAAAAGGTGTAAGC 2324
||||||||||||||||||||||||| |||||| |||||||| |||||| |||||||||||
Sbjct 2098 CAAAAACACAGCCTTATTGCTTATGCATGGGAGTCTTGGTGCGAAACACAAGGTGTAAGC 2157
Query 2325 ATTATAGATGAACCAATGTGTTGTTCGTATTCTTTAGAAGAAGCGATGCGGTGCATTCAT 2384
|| ||||||||| || || || | || ||| | || |||||| ||| ||||| ||||
Sbjct 2158 ATCATAGATGAAGCACTGCGTGGCTCCTATCCCGTAAAAGAAGTGATTCGGTGTGTTCAC 2217
Query 2385 ATCGCACTTCTTTGTGTTCAAGATCATCCTAAAGATAGACCCATGATTTCACAAATCGTT 2444
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct 2218 ATCGCACTTCTTTGTGTTCAAGATCATCCTAAAGATAGACCCACGATTTCGCAAATCATT 2277
Query 2445 TATATGTTGAGCAACGATAACACTCTTCCGATTCCGAAACAACCAACTTTCTCAAACGTG 2504
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2278 TATATGTTGAGCAACGATAACACTCTTCCGATTCCGAAACAACCAACTTTCTCTAACGTG 2337
Query 2505 TTGAACGGGGATCAACAGCTA--G-------ACTACGTATTCTCCATAAACGAAGCAACG 2555
|||||||||||||||||| || | ||||||| |||||||||||||||||||||
Sbjct 2338 TTGAACGGGGATCAACAGTTACTGTCGTCTGACTACGTGTTCTCCATAAACGAAGCAACG 2397
Query 2556 CAAACAGAACTGGAAGCGCGATGA 2579
||||||||||||||||| ||||||
Sbjct 2398 CAAACAGAACTGGAAGCACGATGA 2421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97244395485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5