BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11910.1
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352273 jgi|Araly1|352273|fgenesh1_pg.C_scaffold_6002866 1088 0.0
> Ahg352273 jgi|Araly1|352273|fgenesh1_pg.C_scaffold_6002866
Length=1401
Score = 1088 bits (589), Expect = 0.0
Identities = 670/709 (94%), Gaps = 5/709 (1%)
Strand=Plus/Plus
Query 184 ATGTGTAGTTTGGCTACAAATCTGTTACTACCATCGAAGATGAAACCAGTTTTTCCAGAG 243
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTGTAGTTTGGCTACAAATCTGTTACTACCATCGAAGATGAAACCAGTTTTGCCAGAG 60
Query 244 AAACTGAGCACTAGCTCACTCTGTGTCACCACTAGAAGATCTAAGATGAAGAACCGATCT 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAACTGAGCACTAGCTCACTCTGTGTCACCACTAGAAGATCTAAGATGAAGAACCGATCT 120
Query 304 ATTGTTCCTGTTGCAAGATTGTTTGGACCGGCGATTTTTGAAGCCTCCAAATTGAAAGTG 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTGTTCCTGTTGCAAGATTGTTTGGACCGGCGATTTTTGAAGCCTCCAAATTGAAAGTA 180
Query 364 TTATTCTTAGGAGTTGATGAGAAGAAGCATCCAGCAAAACTTCCAAGAACTTACACTCTT 423
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 181 TTATTCTTAGGAGTTGATGAGAAGAAGCATCCAGCAAAGCTCCCAAGAACTTACACTCTA 240
Query 424 ACTCACAGTGACATAACCGCTAAATTAACTTTAGCTATATCTCAATCCATTAATAACTCT 483
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACTCACAGTGACATAACTGCTAAATTAACTTTAGCTATATCTCAATCCATTAATAACTCT 300
Query 484 CAGTTGCAAGGATGGGCAAATAAATTGTTCCGGGACGAAGTAGTGGGCGAGTGGAAGAAA 543
||||||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||
Sbjct 301 CAGTTGCAAGGATGGGCGAATAAAGTGTTCCGGGACGAAATAGTGGCCGAGTGGAAGAAA 360
Query 544 GTGAAAGGTAAAATGTCGCTTCATGTTCATTGCCACATTAGCGGAGGCCACTTCTTCTTG 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 GTGAAAGGTAAAATGTCGCTTCATGTTCATTGCCACATTAGCGGAGGCCACTTCCTCTTG 420
Query 604 AATCTCATCGCGAAGCTTCGGTACTACATCTTTTGCAAAGAATTACCTGTGGTACTGGAA 663
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 421 AATCTCATCGCGAAGCTTCGGTACTACATCTTTTGCAAAGAATTACCGGTGGTACTGAAA 480
Query 664 GCTTTTGCCCATGGAGATGAGTATTTGTTAAATAATCACCCCGAGCTACAAGAATCTCCT 723
||||||| ||||||||||||||| ||||| |||||| |||| || ||||||||||||| |
Sbjct 481 GCTTTTGTCCATGGAGATGAGTACTTGTTGAATAATTACCCTGAACTACAAGAATCTCTT 540
Query 724 GTTTGGGTTTATTTCCATTCCAACATCCCGGAGTACAACAAGGTCGAATGTTGGGGAC-C 782
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | |
Sbjct 541 GTTTGGGTTTATTTCCATTCAAACATCCCGGAGTACAATAAGGTCGAATGTTGGGG-CTC 599
Query 783 GCTTTGGGAGGCCATGTCGCAGCACCAGCACGACGGAA---GGACCCACAAGAAGAGTGA 839
|||||||||||| | || ||||||||||||||||||| ||| || ||| |||||| |
Sbjct 600 GCTTTGGGAGGCTACATCACAGCACCAGCACGACGGAAATAGGAACCGCAAAAAGAGTCA 659
Query 840 AACTCTACCGGAGCTACCTTGTCCTGATGAGTGCAAGTGTTGCTTTCCG 888
|| |||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct 660 AAATCTACCGGAGCTACCTTGCCCTGGTGAGTGCAAATGTTGCTTTCCG 708
Score = 457 bits (247), Expect = 1e-127
Identities = 494/611 (81%), Gaps = 25/611 (4%)
Strand=Plus/Plus
Query 313 GTTGCAAGATTGTTTGGACCGGCGATTTTTGAAGCCTCCAAATTGAAAGTGTTATTCTTA 372
||||| ||| |||| |||| ||| ||||| |||| || ||| |||| || | || |||
Sbjct 712 GTTGCGAGACTGTTCGGACAGGCCATTTTCAAAGCTTCTAAACTGAATGTCATGTTTTTA 771
Query 373 GGAGTTGATGAGAAGAAGCATCCAGCAAAACTTCCAAGAACTTACACTCTTACTCACAGT 432
|||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| ||
Sbjct 772 GGAGTTGATGAGAAGAAGCATCCATCAAATCTTCCAAGAACTTACACTCTCACTCATAGC 831
Query 433 GACATAACCGCTAAATTAACTTTAGCTATATCTCAATCCATTAATAACTCTCAGTTGCAA 492
|||||||||||||| |||||||||||||| ||||| || || |||||||||||| |||||
Sbjct 832 GACATAACCGCTAACTTAACTTTAGCTATTTCTCACTCTATCAATAACTCTCAGCTGCAA 891
Query 493 GGATGGGCAAATAAATTGTTCCGGGACGAAGTAGTGGGCGAGTGGAAGAAAGTGAAAGGT 552
||||||| ||| | |||| |||||| |||||||| | ||| |||| ||| |||||| ||
Sbjct 892 GGATGGGGAAACAGGTTGTACCGGGATGAAGTAGTTGCCGAATGGAGGAAGGTGAAAAGT 951
Query 553 AAAATGTCGCTTCATGTTCATTGCCACATTAGCGGAGGCCA-CTTCTTCTTGAATCTCAT 611
|||||||||||||| ||||| || |||||||| || | || ||||| ||| |||||||
Sbjct 952 AAAATGTCGCTTCACGTTCACTGTCACATTAGTGGCGATCATTTTCTT-TTGGATCTCAT 1010
Query 612 CGCGAAGCTTCGGTACTACATCTTTTGCAAAGAATTACCTG-TGGTACTGGAAGCTTTTG 670
||||| ||||| |||| ||| |||||||| |||||||| | |||| | |||||||||
Sbjct 1011 TGCGAAACTTCGTTACTTCATATTTTGCAAGGAATTACC-GTTGGTGTTAAAAGCTTTTG 1069
Query 671 CCCATGGAGATGAGTATTTGTTAAATAATCACCCCGAGCTACAAGAATCTCCTGTTTGGG 730
|||||||||| | ||||||| ||| |||| |||||||| || || ||||||||
Sbjct 1070 TGTGTGGAGATGAGAACATGTTAAACAATTACCCTGAGCTACAGGACGCTTTTGTTTGGG 1129
Query 731 TTTATTTCCATTCCAACATCCCGGAGTACAACAAGGTCGAATGTTGGGG-ACCGCTTTGG 789
| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 1130 TGTATTTCCATTCAAACATCCCGGAGTACAACAAGGTCGAATGTTGGGGTAC-GCTGTGC 1188
Query 790 GAGGCCATGTCGCAGCACCAGCACGACGG-AAGGACCCACAAGAAGAGTGAAACTCT-AC 847
||||||| ||||| | | ||| | ||| | |||| | | |||||| || ||
Sbjct 1189 GAGGCCACCTCGCA-C----G-ACGGTTGTAAG-AGCCACCCGT-G--TGAAAC-CTTAC 1237
Query 848 CGGAGCTACCTTGTCCT-GATGAGTGCAAG-TGTTGCTTTCC-GACGGTTAGCACGATTC 904
|||| | ||||| ||| ||| |||||| | ||||| ||||| |||||| |||||||| |
Sbjct 1238 CGGAACCGCCTTG-CCTTGATAAGTGCA-GCTGTTG-TTTCCCGACGGTCAGCACGATCC 1294
Query 905 CGTGGTCTCAT 915
| |||||||||
Sbjct 1295 CTTGGTCTCAT 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44870673309
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5