BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11920.1
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943082 jgi|Araly1|943082|scaffold_603626.1 2331 0.0
Ahg945828 jgi|Araly1|945828|scaffold_702057.1 1144 0.0
> Ahg943082 jgi|Araly1|943082|scaffold_603626.1
Length=1465
Score = 2331 bits (1262), Expect = 0.0
Identities = 1393/1457 (96%), Gaps = 5/1457 (0%)
Strand=Plus/Plus
Query 106 GTAAGAGATTGAAATCAAACATGGAAGAAGATGAATCAACAACACCGAAGAAGAAGTCAG 165
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 GTAAGAGGTTGAAATCAACCATGGAAGAAGATGAATCAACAACACCGAAGAAGAAGACAG 60
Query 166 ATTCTCAGCTGAATCTTCCACCGTCGATGAATCGTCCGACGGTGTCACTCGAGTCACGAA 225
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 61 ATTCTCAGCTGAATCTTCCACCGTCGATGAATCGACCGACGGTCTCACTTGAGTCACGAA 120
Query 226 TCAACCGTTTAATCGATTCGAATCATTATCACTCTCCTTCGAAACCTATTTACTCAGATA 285
||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 121 TCAACCGTTTAATTGATTCAAATCATTATCACTCTCCTTCTAAACCTATTTACTCAGATA 180
Query 286 GGTTTATTCCAAGTAGATCTGGTTCCAATTTCGCGCTTTTCGATTTGGCATCTTCTTCGC 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTTTATTCCAAGTAGATCTGGTTCCAATTTCGCGCTTTTCGATTTGGCATCTTCTTCGC 240
Query 346 CGAATAAGAAAGATGGGAAAGAAGATGGGGCTGGTTCTTATGCGAGTCTTTTGAAAACGG 405
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CG---AAGAAAGATGGGAAAGAAGATGGGGCTGGTTCTTATGCGAGTCTTTTGAAAACGG 297
Query 406 CGCTTTTTGGTCCGGTGACGCCGGAGAAAAGTGATGTTGTTAATGGGTTTTCTCCGTCGG 465
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 298 CGCTTTTTGGTCCGGTGACACCGGAGAAGAGTGATGTTGTTAATGGGTTTTCTCCGTCGA 357
Query 466 GGAATATTTTTAGGTTTAAGACGGAAACGCAGAGGTCTTTGAATTTGTATCCGCCTTTTG 525
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 358 GGAATATTTTTAGGTTTAAGACGGAAACGCAGAGGTCTTTGAACTTGTATCCGCCTTTTG 417
Query 526 ATTCTGATGTGGTTAGTGGTGTTAGCCCTAGTCCTGTTAAGTCGCCGAGGAAGATTCTTA 585
|||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 418 GTTCTGATGTGGTGACTGGTGTTAGCCCTAGTCCTGCTAAGTCGCCGAGGAAGATTCTTA 477
Query 586 GGTCTCCTTATAAGGTATTGGATGCGCCGGCTCTGCAAGATGATTTTTACTTGAATCTCG 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGTCTCCTTATAAGGTATTGGATGCGCCGGCTCTGCAAGATGATTTTTACTTGAATCTCG 537
Query 646 TGGATTGGTCGGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTGTATTTGTGGA 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TGGATTGGTCGGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTGTATTTGTGGA 597
Query 706 ATGCTTGTAGTAGCAAGGTAACTAAGTTATGCGATCTTGGGGTCGATGAAA-CTGTTTGC 764
|||||||||||||||| |||||||||||||||||||||||||| ||||||| | ||||||
Sbjct 598 ATGCTTGTAGTAGCAACGTAACTAAGTTATGCGATCTTGGGGTTGATGAAAGC-GTTTGC 656
Query 765 TCAGTTGGTTGGGCACTACGTGGAACACATTTGGCTATTGGAACTAGTAGCGGAACAGTA 824
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 657 TCAGTTGGTTGGGCACTACGTGGAACACATTTGGCGATTGGAACTAGTAGTGGAACAGTA 716
Query 825 CAGATATGGGATGTGTTACGATGCAAGAATATTAGAACAATGGAAGGTCATCGGCTAAGA 884
||||| |||||||||||||||||||| | || |||||||||||||||||||| ||||||
Sbjct 717 CAGATCTGGGATGTGTTACGATGCAATAGGATAAGAACAATGGAAGGTCATCGTCTAAGA 776
Query 885 GTTGGAGCCTTGGCATGGAGCTCATCTGTTCTGTCTTCAGGTAGTAGAGACAAGAGCATA 944
||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 777 GTTGGAGCCCTGGCATGGAGTTCATCTGTACTGTCTTCAGGTAGCAGAGACAAGAGCATA 836
Query 945 CTTCAGAGAGACATTCGTACTCAAGAAGATCATGTCAGTAAACTTAAAGGTCACAAATCC 1004
||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 837 CTTCAGAGAGACATTCGGACTCAAGAAGATCATGTCAGTAAGCTAAAAGGTCACAAATCC 896
Query 1005 GAAATCTGTGGACTCAAATGGTCTTCGGACAATCGCGAGCTAGCATCAGGTGGAAACGAC 1064
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 897 GAAATATGTGGACTCAAATGGTCTTTTGACAATCGCGAGCTAGCATCAGGTGGAAATGAC 956
Query 1065 AATAAGCTGTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAGATTCTGTGAACAC 1124
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 957 AATAAGCTTTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAGATACTGTGAACAC 1016
Query 1125 GCCGCAGCAGTGAAAGCCATTGCGTGGTCTCCACATCATTTTGGACTTCTTGCTTCTGGT 1184
||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||
Sbjct 1017 GCCGCAGCAGTGAAAGCCATTGCATGGTCACCACATCATCATGGACTTCTTGCTTCCGGT 1076
Query 1185 GGTGGCACTGCTGATAGATGTATCCGTTTCTGGAACACAACGACAAACACTCATTTAAAT 1244
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1077 GGTGGCACTGCTGATAGATGTATCCGTTTCTGGAACACCACGACAAACACTCATTTAAGT 1136
Query 1245 TGCGTAGATACCAACAGCCAGGTGTGTAATTTGGTATGGTCTAAGAACGTGAATGAGCTT 1304
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGCATAGACACCAACAGCCAGGTGTGTAATTTGGTATGGTCTAAGAACGTGAATGAGCTT 1196
Query 1305 GTGAGCACACACGGGTATTCCCAGAACCAAATCATCGTCTGGAAATATCCAACCATGTCT 1364
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 GTGAGCACGCACGGATATTCCCAGAACCAAATCATCGTCTGGAAATATCCAACCATGTCT 1256
Query 1365 AAATTGGCAACTCTCACTGGTCACTCGTACCGCGTTCTGTACCTTGCGGTGTCACCGGAT 1424
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1257 AAATTGGCAACTCTCACGGGTCACACGTACCGCGTTCTGTACCTTGCGGTGTCACCTGAT 1316
Query 1425 GGACAGACAATTGTGACAGGAGCAGGAGATGAAACCTTGAGATTCTGGAATGTCTTCCCT 1484
|||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1317 GGACAGGCGATTGTGACAGGAGCAGGAGATGAAACCTTGCGATTCTGGAATGTCTTCCCT 1376
Query 1485 TCTCCGAAATCTCAGAGCAGGGAGAGCGAAATCGGGGCATTATCTTTTGGTAGAACAACA 1544
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TCTCCGAAATCTCAGAGCAGAGAGAGCGAAATCGGGGCATTATCTTTTGGTAGAACAACA 1436
Query 1545 ATCCGGTGACATCTTGA 1561
||||||||| |||||||
Sbjct 1437 ATCCGGTGAAATCTTGA 1453
> Ahg945828 jgi|Araly1|945828|scaffold_702057.1
Length=1471
Score = 1144 bits (619), Expect = 0.0
Identities = 1142/1390 (82%), Gaps = 53/1390 (4%)
Strand=Plus/Plus
Query 186 CCGTCGATGAAT-CGTCCGACGGTGTCACTCGAGTCACGAATCAACCGTTTAATCGATTC 244
|||||||||||| | |||| ||| ||||| |||||||||||||| || |||||| || |
Sbjct 93 CCGTCGATGAATAC-TCCGGTGGTTTCACTTGAGTCACGAATCAATCGATTAATCAATGC 151
Query 245 GAATCATTATCACTCTCCTTCGAA-ACCTATTTACTCAGATAGGTTTATTCCAAGTAGAT 303
||||| | ||| || || || || |||| ||||| ||||| |||||||| |||||||
Sbjct 152 TAATCAATCTCAATCACCATC-AAGGTCTATATACTCTGATAGATTTATTCCCAGTAGAT 210
Query 304 CTGGTTCCAATTTCGCGCTTTTCGATTTGGCATCTTCTTCGCCGAATAAGAAAGATGGGA 363
| || ||||||||||| || |||||| | |||| |||| |||| | |||||||| |
Sbjct 211 CCGGATCCAATTTCGCTCTCTTCGATCT---ATCTCCTTCTCCGAGT---AAAGATGGTA 264
Query 364 AAGAAGATGGGGCTGGTTCTTATGCGAGTCTTTTGAAAACGGCGC-TTTTTGGTCCGGTG 422
| |||||||| ||||| ||||| || | ||| ||| |||| | | ||||| || | |
Sbjct 265 AGGAAGATGGAGCTGGCTCTTACGCTACTCTGTTGCGTGCGGC-CATGTTTGGACCAGAG 323
Query 423 ACGCCGGAGAAAAGTGATGTTGTTAATGGGTTTTCTCCGTCGGGGAATATTTTTAGGTTT 482
||||||||| ||| || | | ||| |||||| ||| | || |||||||||| ||||||
Sbjct 324 ACGCCGGAG--AAGAGA-GATATTACTGGGTTCTCTTCTTCCAGGAATATTTTCAGGTTT 380
Query 483 AAGACGGAAACGCAGAGGTCTTTGAATT-TGTATCCGCCTTTTGAT-TCTGATGTGGT-T 539
|||||||| ||||| |||||||||||| | | | | ||||||| | | ||||| | |
Sbjct 381 AAGACGGAGACGCATCGGTCTTTGAATTCT-TTTTCTCCTTTTGGTGT-TGATG-ATTCT 437
Query 540 AGTGGTGTTAGCCCTAGTCCTGTT-AAGTCGCCGAGG-AAGATTCTTAGGTCTCCTTATA 597
||||||| | | |||||||||| ||| | || ||| ||| | | | || || ||||
Sbjct 438 CCTGGTGTTTGTCATAGTCCTGTTAAAG-CTCCCAGGAAAG-TGCCGCGATCGCCGTATA 495
Query 598 AGGTATTGGATGCGCCGG-CTCTGCAAGATGATTTTTACT-TGAATCTCGTGGATTGGTC 655
| ||||||||||| |||| || |||||||||||||||| | |||||||||||||||||||
Sbjct 496 AAGTATTGGATGCACCGGCCT-TGCAAGATGATTTTTA-TCTGAATCTCGTGGATTGGTC 553
Query 656 GGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTGTATTTGTGGAATGCTTGTAG 715
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 554 TGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTTTATTTATGGAATGCTTGTAG 613
Query 716 TAGCAAGGTAACTAAGTTATGCGATCTTGGGG-TCGATGAAACTGTTTGCTCAGTTGGTT 774
|||||||||||||||||||| |||||||| | | || || | ||||||||| || ||||
Sbjct 614 CAGCAAGGTAACTAAGTTATGTGATCTTGGAGCT-GAGGATAGTGTTTGCTCTGTGGGTT 672
Query 775 GGGCACTACGTGGAACACATTTGGCTATTGGAACTAGTAGCGG-AACAGTACAGATATGG 833
|||| |||||||||| ||| ||||| |||||||||||| ||| || ||| |||||||||
Sbjct 673 GGGCGTTACGTGGAACTCATCTGGCTGTTGGAACTAGTACCGGGAA-AGTTCAGATATGG 731
Query 834 GATGTGTTACGATGCAAGAATATTA-GAACAATGGAAGGTCATCGGCTAAGAGTTGGAGC 892
|||| || ||| ||||| || | | ||||||||||||||||||| ||||||||||||||
Sbjct 732 GATGCGTCACGCTGCAA-AAGAACAAGAACAATGGAAGGTCATCGTCTAAGAGTTGGAGC 790
Query 893 CTTGGCATGGAGCTCATCTGTTCTGTCTTCAGGTAGTAGAGACAAGAGCATACTTCAGAG 952
| |||||||| | ||||| |||||||| || ||||| ||||| ||||| || ||||||||
Sbjct 791 CCTGGCATGGGGTTCATCGGTTCTGTCATCTGGTAGCAGAGATAAGAGTATTCTTCAGAG 850
Query 953 AGACATTCG-TACTCAAGAAGATCATGTCAGTAAACTTAAAGGTCACAAATCCGAAATCT 1011
|||||| | | |||||||||||||||||||||||||| |||||||||||| || | |
Sbjct 851 AGACATAAGGTG-TCAAGAAGATCATGTCAGTAAACTTACAGGTCACAAATCTGAGGTAT 909
Query 1012 GTGGACTCAAATGGTCTTCGGACAATC-GCGAGCTAGCATCAGGTGGAAACGACAATAAG 1070
| |||||||| ||||||| ||||| | | ||| ||||||| ||||||||||||||| |
Sbjct 910 GCGGACTCAAGTGGTCTTATGACAA-CAGGGAGTTAGCATCTGGTGGAAACGACAATCGG 968
Query 1071 CTGTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAGAT-TCTGTGAACACGCCGC 1129
|| ||||||||||||||||||||||||||||||||||||| || | |||||||| | ||
Sbjct 969 CTTTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAAATATA-GTGAACACACTGC 1027
Query 1130 AGCAGTGAAAGCCATTGCGTGGTCTCCACATCATTT-TGGACTTCTTGCTTCTGGTGGTG 1188
||| |||||||||||||| |||||||| ||| || ||| |||||||| |||||||| |
Sbjct 1028 AGCGGTGAAAGCCATTGCTTGGTCTCCTCATG-TTCATGGGCTTCTTGCCTCTGGTGGGG 1086
Query 1189 GCACTGCTGATAGATGTATCCGTTTCTGGAACACAACGACAAACACTCATTTAAATTGCG 1248
| ||||||||||| || || ||||| ||||| |||||||| ||||||||||||| | |
Sbjct 1087 GAACTGCTGATAGGTGCATACGTTTTTGGAATACAACGACGAACACTCATTTAAGCTCCA 1146
Query 1249 TAGATACCAACAGCCAGGTGTGTAATTTGG-TATGGTCTAAGAACGTGAATGAGCTTGTG 1307
||||||| ||| ||||| || ||| | | | |||||||||||||| || ||||| ||
Sbjct 1147 TAGATACTTGCAGTCAGGTATGCAATCTCGCT-TGGTCTAAGAACGTAAACGAGCTAGTT 1205
Query 1308 AGCACACACGGGTATTCCCAGAACCAAATCATCGTCTGGAAATATCCAACCATGTCTAAA 1367
|||||||| || || || |||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1206 AGCACACATGGATACTCTCAGAACCAAATCATTGTCTGGAAATACCCAACCATGTCCAAA 1265
Query 1368 -TTGGCAACTCTCACTGGTCACTCGTACCGCGTTCTGTACCTTGCGGTGTCACCGGATGG 1426
||| ||||||| ||||||||| | |||||||| |||||||||||||| ||||| |||||
Sbjct 1266 ATTG-CAACTCTGACTGGTCACACATACCGCGTCCTGTACCTTGCGGTTTCACCCGATGG 1324
Query 1427 ACAGACAATTGTGACAGGAGCAGGAGATGAAACCTTGA-GATTCTGGAATGTCTTCCCTT 1485
|||||| ||||| || |||||||||||||||||||| | | ||||||||||| || ||||
Sbjct 1325 ACAGACGATTGTTACCGGAGCAGGAGATGAAACCTT-ACGGTTCTGGAATGTGTTTCCTT 1383
Query 1486 CTCCGAAATCTCAGAGCAGGGAGAGC-GAAATCGGGGCAT-TATCTTTTGGTAGAACAAC 1543
| || |||||||||| || ||| | | ||||||||| | | | ||||| |||||||||||
Sbjct 1384 CCCCAAAATCTCAGAACACGGATA-CTGAAATCGGGTCGTCTTTCTTT-GGTAGAACAAC 1441
Query 1544 AATCCGGTGA 1553
||| ||||||
Sbjct 1442 AATTCGGTGA 1451
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71190667905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5