BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11920.1 Length=1895 Score E Sequences producing significant alignments: (Bits) Value Ahg943082 jgi|Araly1|943082|scaffold_603626.1 2331 0.0 Ahg945828 jgi|Araly1|945828|scaffold_702057.1 1144 0.0 > Ahg943082 jgi|Araly1|943082|scaffold_603626.1 Length=1465 Score = 2331 bits (1262), Expect = 0.0 Identities = 1393/1457 (96%), Gaps = 5/1457 (0%) Strand=Plus/Plus Query 106 GTAAGAGATTGAAATCAAACATGGAAGAAGATGAATCAACAACACCGAAGAAGAAGTCAG 165 ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| Sbjct 1 GTAAGAGGTTGAAATCAACCATGGAAGAAGATGAATCAACAACACCGAAGAAGAAGACAG 60 Query 166 ATTCTCAGCTGAATCTTCCACCGTCGATGAATCGTCCGACGGTGTCACTCGAGTCACGAA 225 |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 61 ATTCTCAGCTGAATCTTCCACCGTCGATGAATCGACCGACGGTCTCACTTGAGTCACGAA 120 Query 226 TCAACCGTTTAATCGATTCGAATCATTATCACTCTCCTTCGAAACCTATTTACTCAGATA 285 ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 121 TCAACCGTTTAATTGATTCAAATCATTATCACTCTCCTTCTAAACCTATTTACTCAGATA 180 Query 286 GGTTTATTCCAAGTAGATCTGGTTCCAATTTCGCGCTTTTCGATTTGGCATCTTCTTCGC 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGTTTATTCCAAGTAGATCTGGTTCCAATTTCGCGCTTTTCGATTTGGCATCTTCTTCGC 240 Query 346 CGAATAAGAAAGATGGGAAAGAAGATGGGGCTGGTTCTTATGCGAGTCTTTTGAAAACGG 405 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CG---AAGAAAGATGGGAAAGAAGATGGGGCTGGTTCTTATGCGAGTCTTTTGAAAACGG 297 Query 406 CGCTTTTTGGTCCGGTGACGCCGGAGAAAAGTGATGTTGTTAATGGGTTTTCTCCGTCGG 465 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 298 CGCTTTTTGGTCCGGTGACACCGGAGAAGAGTGATGTTGTTAATGGGTTTTCTCCGTCGA 357 Query 466 GGAATATTTTTAGGTTTAAGACGGAAACGCAGAGGTCTTTGAATTTGTATCCGCCTTTTG 525 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 358 GGAATATTTTTAGGTTTAAGACGGAAACGCAGAGGTCTTTGAACTTGTATCCGCCTTTTG 417 Query 526 ATTCTGATGTGGTTAGTGGTGTTAGCCCTAGTCCTGTTAAGTCGCCGAGGAAGATTCTTA 585 |||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 418 GTTCTGATGTGGTGACTGGTGTTAGCCCTAGTCCTGCTAAGTCGCCGAGGAAGATTCTTA 477 Query 586 GGTCTCCTTATAAGGTATTGGATGCGCCGGCTCTGCAAGATGATTTTTACTTGAATCTCG 645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 GGTCTCCTTATAAGGTATTGGATGCGCCGGCTCTGCAAGATGATTTTTACTTGAATCTCG 537 Query 646 TGGATTGGTCGGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTGTATTTGTGGA 705 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 TGGATTGGTCGGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTGTATTTGTGGA 597 Query 706 ATGCTTGTAGTAGCAAGGTAACTAAGTTATGCGATCTTGGGGTCGATGAAA-CTGTTTGC 764 |||||||||||||||| |||||||||||||||||||||||||| ||||||| | |||||| Sbjct 598 ATGCTTGTAGTAGCAACGTAACTAAGTTATGCGATCTTGGGGTTGATGAAAGC-GTTTGC 656 Query 765 TCAGTTGGTTGGGCACTACGTGGAACACATTTGGCTATTGGAACTAGTAGCGGAACAGTA 824 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 657 TCAGTTGGTTGGGCACTACGTGGAACACATTTGGCGATTGGAACTAGTAGTGGAACAGTA 716 Query 825 CAGATATGGGATGTGTTACGATGCAAGAATATTAGAACAATGGAAGGTCATCGGCTAAGA 884 ||||| |||||||||||||||||||| | || |||||||||||||||||||| |||||| Sbjct 717 CAGATCTGGGATGTGTTACGATGCAATAGGATAAGAACAATGGAAGGTCATCGTCTAAGA 776 Query 885 GTTGGAGCCTTGGCATGGAGCTCATCTGTTCTGTCTTCAGGTAGTAGAGACAAGAGCATA 944 ||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||| Sbjct 777 GTTGGAGCCCTGGCATGGAGTTCATCTGTACTGTCTTCAGGTAGCAGAGACAAGAGCATA 836 Query 945 CTTCAGAGAGACATTCGTACTCAAGAAGATCATGTCAGTAAACTTAAAGGTCACAAATCC 1004 ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| Sbjct 837 CTTCAGAGAGACATTCGGACTCAAGAAGATCATGTCAGTAAGCTAAAAGGTCACAAATCC 896 Query 1005 GAAATCTGTGGACTCAAATGGTCTTCGGACAATCGCGAGCTAGCATCAGGTGGAAACGAC 1064 ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 897 GAAATATGTGGACTCAAATGGTCTTTTGACAATCGCGAGCTAGCATCAGGTGGAAATGAC 956 Query 1065 AATAAGCTGTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAGATTCTGTGAACAC 1124 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 957 AATAAGCTTTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAGATACTGTGAACAC 1016 Query 1125 GCCGCAGCAGTGAAAGCCATTGCGTGGTCTCCACATCATTTTGGACTTCTTGCTTCTGGT 1184 ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||| Sbjct 1017 GCCGCAGCAGTGAAAGCCATTGCATGGTCACCACATCATCATGGACTTCTTGCTTCCGGT 1076 Query 1185 GGTGGCACTGCTGATAGATGTATCCGTTTCTGGAACACAACGACAAACACTCATTTAAAT 1244 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 1077 GGTGGCACTGCTGATAGATGTATCCGTTTCTGGAACACCACGACAAACACTCATTTAAGT 1136 Query 1245 TGCGTAGATACCAACAGCCAGGTGTGTAATTTGGTATGGTCTAAGAACGTGAATGAGCTT 1304 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 TGCATAGACACCAACAGCCAGGTGTGTAATTTGGTATGGTCTAAGAACGTGAATGAGCTT 1196 Query 1305 GTGAGCACACACGGGTATTCCCAGAACCAAATCATCGTCTGGAAATATCCAACCATGTCT 1364 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 GTGAGCACGCACGGATATTCCCAGAACCAAATCATCGTCTGGAAATATCCAACCATGTCT 1256 Query 1365 AAATTGGCAACTCTCACTGGTCACTCGTACCGCGTTCTGTACCTTGCGGTGTCACCGGAT 1424 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||| Sbjct 1257 AAATTGGCAACTCTCACGGGTCACACGTACCGCGTTCTGTACCTTGCGGTGTCACCTGAT 1316 Query 1425 GGACAGACAATTGTGACAGGAGCAGGAGATGAAACCTTGAGATTCTGGAATGTCTTCCCT 1484 |||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1317 GGACAGGCGATTGTGACAGGAGCAGGAGATGAAACCTTGCGATTCTGGAATGTCTTCCCT 1376 Query 1485 TCTCCGAAATCTCAGAGCAGGGAGAGCGAAATCGGGGCATTATCTTTTGGTAGAACAACA 1544 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1377 TCTCCGAAATCTCAGAGCAGAGAGAGCGAAATCGGGGCATTATCTTTTGGTAGAACAACA 1436 Query 1545 ATCCGGTGACATCTTGA 1561 ||||||||| ||||||| Sbjct 1437 ATCCGGTGAAATCTTGA 1453 > Ahg945828 jgi|Araly1|945828|scaffold_702057.1 Length=1471 Score = 1144 bits (619), Expect = 0.0 Identities = 1142/1390 (82%), Gaps = 53/1390 (4%) Strand=Plus/Plus Query 186 CCGTCGATGAAT-CGTCCGACGGTGTCACTCGAGTCACGAATCAACCGTTTAATCGATTC 244 |||||||||||| | |||| ||| ||||| |||||||||||||| || |||||| || | Sbjct 93 CCGTCGATGAATAC-TCCGGTGGTTTCACTTGAGTCACGAATCAATCGATTAATCAATGC 151 Query 245 GAATCATTATCACTCTCCTTCGAA-ACCTATTTACTCAGATAGGTTTATTCCAAGTAGAT 303 ||||| | ||| || || || || |||| ||||| ||||| |||||||| ||||||| Sbjct 152 TAATCAATCTCAATCACCATC-AAGGTCTATATACTCTGATAGATTTATTCCCAGTAGAT 210 Query 304 CTGGTTCCAATTTCGCGCTTTTCGATTTGGCATCTTCTTCGCCGAATAAGAAAGATGGGA 363 | || ||||||||||| || |||||| | |||| |||| |||| | |||||||| | Sbjct 211 CCGGATCCAATTTCGCTCTCTTCGATCT---ATCTCCTTCTCCGAGT---AAAGATGGTA 264 Query 364 AAGAAGATGGGGCTGGTTCTTATGCGAGTCTTTTGAAAACGGCGC-TTTTTGGTCCGGTG 422 | |||||||| ||||| ||||| || | ||| ||| |||| | | ||||| || | | Sbjct 265 AGGAAGATGGAGCTGGCTCTTACGCTACTCTGTTGCGTGCGGC-CATGTTTGGACCAGAG 323 Query 423 ACGCCGGAGAAAAGTGATGTTGTTAATGGGTTTTCTCCGTCGGGGAATATTTTTAGGTTT 482 ||||||||| ||| || | | ||| |||||| ||| | || |||||||||| |||||| Sbjct 324 ACGCCGGAG--AAGAGA-GATATTACTGGGTTCTCTTCTTCCAGGAATATTTTCAGGTTT 380 Query 483 AAGACGGAAACGCAGAGGTCTTTGAATT-TGTATCCGCCTTTTGAT-TCTGATGTGGT-T 539 |||||||| ||||| |||||||||||| | | | | ||||||| | | ||||| | | Sbjct 381 AAGACGGAGACGCATCGGTCTTTGAATTCT-TTTTCTCCTTTTGGTGT-TGATG-ATTCT 437 Query 540 AGTGGTGTTAGCCCTAGTCCTGTT-AAGTCGCCGAGG-AAGATTCTTAGGTCTCCTTATA 597 ||||||| | | |||||||||| ||| | || ||| ||| | | | || || |||| Sbjct 438 CCTGGTGTTTGTCATAGTCCTGTTAAAG-CTCCCAGGAAAG-TGCCGCGATCGCCGTATA 495 Query 598 AGGTATTGGATGCGCCGG-CTCTGCAAGATGATTTTTACT-TGAATCTCGTGGATTGGTC 655 | ||||||||||| |||| || |||||||||||||||| | ||||||||||||||||||| Sbjct 496 AAGTATTGGATGCACCGGCCT-TGCAAGATGATTTTTA-TCTGAATCTCGTGGATTGGTC 553 Query 656 GGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTGTATTTGTGGAATGCTTGTAG 715 |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 554 TGCACAAAATGTTCTTGCAGTGGGATTAGGGAACTGCGTTTATTTATGGAATGCTTGTAG 613 Query 716 TAGCAAGGTAACTAAGTTATGCGATCTTGGGG-TCGATGAAACTGTTTGCTCAGTTGGTT 774 |||||||||||||||||||| |||||||| | | || || | ||||||||| || |||| Sbjct 614 CAGCAAGGTAACTAAGTTATGTGATCTTGGAGCT-GAGGATAGTGTTTGCTCTGTGGGTT 672 Query 775 GGGCACTACGTGGAACACATTTGGCTATTGGAACTAGTAGCGG-AACAGTACAGATATGG 833 |||| |||||||||| ||| ||||| |||||||||||| ||| || ||| ||||||||| Sbjct 673 GGGCGTTACGTGGAACTCATCTGGCTGTTGGAACTAGTACCGGGAA-AGTTCAGATATGG 731 Query 834 GATGTGTTACGATGCAAGAATATTA-GAACAATGGAAGGTCATCGGCTAAGAGTTGGAGC 892 |||| || ||| ||||| || | | ||||||||||||||||||| |||||||||||||| Sbjct 732 GATGCGTCACGCTGCAA-AAGAACAAGAACAATGGAAGGTCATCGTCTAAGAGTTGGAGC 790 Query 893 CTTGGCATGGAGCTCATCTGTTCTGTCTTCAGGTAGTAGAGACAAGAGCATACTTCAGAG 952 | |||||||| | ||||| |||||||| || ||||| ||||| ||||| || |||||||| Sbjct 791 CCTGGCATGGGGTTCATCGGTTCTGTCATCTGGTAGCAGAGATAAGAGTATTCTTCAGAG 850 Query 953 AGACATTCG-TACTCAAGAAGATCATGTCAGTAAACTTAAAGGTCACAAATCCGAAATCT 1011 |||||| | | |||||||||||||||||||||||||| |||||||||||| || | | Sbjct 851 AGACATAAGGTG-TCAAGAAGATCATGTCAGTAAACTTACAGGTCACAAATCTGAGGTAT 909 Query 1012 GTGGACTCAAATGGTCTTCGGACAATC-GCGAGCTAGCATCAGGTGGAAACGACAATAAG 1070 | |||||||| ||||||| ||||| | | ||| ||||||| ||||||||||||||| | Sbjct 910 GCGGACTCAAGTGGTCTTATGACAA-CAGGGAGTTAGCATCTGGTGGAAACGACAATCGG 968 Query 1071 CTGTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAGAT-TCTGTGAACACGCCGC 1129 || ||||||||||||||||||||||||||||||||||||| || | |||||||| | || Sbjct 969 CTTTTTGTATGGAACCAACATTCAACACAACCGGTTTTGAAATATA-GTGAACACACTGC 1027 Query 1130 AGCAGTGAAAGCCATTGCGTGGTCTCCACATCATTT-TGGACTTCTTGCTTCTGGTGGTG 1188 ||| |||||||||||||| |||||||| ||| || ||| |||||||| |||||||| | Sbjct 1028 AGCGGTGAAAGCCATTGCTTGGTCTCCTCATG-TTCATGGGCTTCTTGCCTCTGGTGGGG 1086 Query 1189 GCACTGCTGATAGATGTATCCGTTTCTGGAACACAACGACAAACACTCATTTAAATTGCG 1248 | ||||||||||| || || ||||| ||||| |||||||| ||||||||||||| | | Sbjct 1087 GAACTGCTGATAGGTGCATACGTTTTTGGAATACAACGACGAACACTCATTTAAGCTCCA 1146 Query 1249 TAGATACCAACAGCCAGGTGTGTAATTTGG-TATGGTCTAAGAACGTGAATGAGCTTGTG 1307 ||||||| ||| ||||| || ||| | | | |||||||||||||| || ||||| || Sbjct 1147 TAGATACTTGCAGTCAGGTATGCAATCTCGCT-TGGTCTAAGAACGTAAACGAGCTAGTT 1205 Query 1308 AGCACACACGGGTATTCCCAGAACCAAATCATCGTCTGGAAATATCCAACCATGTCTAAA 1367 |||||||| || || || |||||||||||||| ||||||||||| ||||||||||| ||| Sbjct 1206 AGCACACATGGATACTCTCAGAACCAAATCATTGTCTGGAAATACCCAACCATGTCCAAA 1265 Query 1368 -TTGGCAACTCTCACTGGTCACTCGTACCGCGTTCTGTACCTTGCGGTGTCACCGGATGG 1426 ||| ||||||| ||||||||| | |||||||| |||||||||||||| ||||| ||||| Sbjct 1266 ATTG-CAACTCTGACTGGTCACACATACCGCGTCCTGTACCTTGCGGTTTCACCCGATGG 1324 Query 1427 ACAGACAATTGTGACAGGAGCAGGAGATGAAACCTTGA-GATTCTGGAATGTCTTCCCTT 1485 |||||| ||||| || |||||||||||||||||||| | | ||||||||||| || |||| Sbjct 1325 ACAGACGATTGTTACCGGAGCAGGAGATGAAACCTT-ACGGTTCTGGAATGTGTTTCCTT 1383 Query 1486 CTCCGAAATCTCAGAGCAGGGAGAGC-GAAATCGGGGCAT-TATCTTTTGGTAGAACAAC 1543 | || |||||||||| || ||| | | ||||||||| | | | ||||| ||||||||||| Sbjct 1384 CCCCAAAATCTCAGAACACGGATA-CTGAAATCGGGTCGTCTTTCTTT-GGTAGAACAAC 1441 Query 1544 AATCCGGTGA 1553 ||| |||||| Sbjct 1442 AATTCGGTGA 1451 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71190667905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5