BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G11930.1 Length=819 Score E Sequences producing significant alignments: (Bits) Value Ahg943083 jgi|Araly1|943083|scaffold_603627.1 785 0.0 Ahg943087 jgi|Araly1|943087|scaffold_603631.1 270 1e-71 > Ahg943083 jgi|Araly1|943083|scaffold_603627.1 Length=842 Score = 785 bits (425), Expect = 0.0 Identities = 641/742 (86%), Gaps = 28/742 (4%) Strand=Plus/Plus Query 94 GGAGTTCGAGACATCGTCAACACGAACAAGGCAGTAATCAGTGAACGGCTAGAT-ACGTT 152 ||||| | ||| |||| |||| |||||||| | || || |||||||||||||| | || Sbjct 84 GGAGTCCAAGATGTCGTGAACAAGAACAAGGTATTATTCGGTGAACGGCTAGATGA-ATT 142 Query 153 TGAGAAAGCGGCAGCTATCTCGGATGTTCTCTCGGCCGCAGAGACCCCGCTTCCCAACGG 212 ||||||||| || |||||||||| |||||| |||||||||||| |||||||| ||||| Sbjct 143 TGAGAAAGCCGCGGCTATCTCGGCCGTTCTCACGGCCGCAGAGAATCCGCTTCCAAACGG 202 Query 213 GGCGACT-GATTGGTACGGCATCATTCGAATGAAA-CAGCCGGGACC-GAT-TGTAGGGG 268 || | |||||||| || || ||| | ||||| || || ||||| | | | || || Sbjct 203 ATTGA-TGGATTGGTATGGGATGATTAGGGTGAAACCA-CCCGGACCTG-TCT-TATCGG 258 Query 269 AGGACTTCGAGAAGTTGATGAATCTCTTGAACTCGAGTAACAATCCTTTCCCGTTTTGCC 328 ||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||| Sbjct 259 AGGACTTCGAGAAGTTGATGAATCTATTGAACTCCAGTAACAACCCTTTCCCATTTTGCC 318 Query 329 AGGAAGCTCGTGTTAAAGCCTCGTTAGCTTGGTCGTTTCTGTCTGATCCAACCTCTAAGG 388 ||||||||||||| | |||||||||||||||||||| |||||| ||||||||||| |||| Sbjct 319 AGGAAGCTCGTGTGAGAGCCTCGTTAGCTTGGTCGTATCTGTCCGATCCAACCTCAAAGG 378 Query 389 CGAAGTACGATAA-GTCTATTTCCAGCGAGGACAACCTTGTAATCGAAGACCAAACCGGT 447 || ||||||||| | |||| |||| | |||| |||||||||||||||||||||| || | Sbjct 379 CGGGGTACGATAACG-CTATGTCCAACAAGGAAAACCTTGTAATCGAAGACCAAAGCGAT 437 Query 448 GACATAACCGATGGTGTTCCTCTTTGCGGAGAGGGTAGCGAAGGTGAAGTGGACACAAGA 507 ||||||||||||| || | |||||||||||| |||||| |||||||||||||||||||| Sbjct 438 GACATAACCGATGTTGGTGGTCTTTGCGGAGATGGTAGCAAAGGTGAAGTGGACACAAGA 497 Query 508 AAACGAAAGGCGGAGAGTCTCATTTTTTCTGATTTGCCAGCATTAGAGAACTTGAAAGAG 567 |||||||||||||| ||||||| || ||||||||||||||||| |||| ||||||||||| Sbjct 498 AAACGAAAGGCGGATAGTCTCACTTGTTCTGATTTGCCAGCATCAGAGTACTTGAAAGAG 557 Query 568 TTTCAGGAAACGGAAGAGAGTCCCTTGCC-CGTGGAGGAGA-A-AA-A--C----AA--- 614 |||||||| ||||| |||| ||||||||| | ||| ||||| | || | | || Sbjct 558 TTTCAGGAGACGGAGGAGAATCCCTTGCCGC-TGGCGGAGACACAACAGGCTCCCAACAA 616 Query 615 TGAAGTTCCATCGAAAGACACTTCGTTTGTCCCGGAGAAACGTAACGTTGGTCCGGGACC 674 |||||||||||||||||||||||| | |||||| ||||||| ||| |||||||| ||||| Sbjct 617 TGAAGTTCCATCGAAAGACACTTCCTCTGTCCCCGAGAAACATAAAGTTGGTCCTGGACC 676 Query 675 TGACGATGAGGTTGTTG-TGATTTCTGATGACGAGGATGAGGAATACGTGGGCCGAGATA 733 ||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 677 TGACGATGAGGTTGT-GATTATTTCTGATGACGAGGATGAGGAATACGTGGGCCGAGATA 735 Query 734 TTATCTCAATGGCTAGAACAGCGAAAGTGCGCATAGTTGATGGAAGGAAAGTGAAATTTG 793 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 736 TTATATCAATGGCTAGAACAGCGAAAGTGCGCATAGTTGATGGAAGGAAAGTGAAATTTA 795 Query 794 TCCCATTGAGGAAGAAGCAAAA 815 | |||||||||||||||||||| Sbjct 796 TTCCATTGAGGAAGAAGCAAAA 817 > Ahg943087 jgi|Araly1|943087|scaffold_603631.1 Length=431 Score = 270 bits (146), Expect = 1e-71 Identities = 257/308 (83%), Gaps = 18/308 (6%) Strand=Plus/Plus Query 437 ACCAAACCGGTGACATAACCGATGGT-GTTCCTCTTTGCGGAGAGGGTAGCGAAGGTGAA 495 |||||| ||||||||||||| ||| | | | ||||||||||||||||||| |||||||| Sbjct 37 ACCAAAGCGGTGACATAACCAATGATAG-TGGTCTTTGCGGAGAGGGTAGCAAAGGTGAA 95 Query 496 GTGGACACAAGAAAACGAAAGGCGGAGAGTCTCATTTTTTCTGATTTGCCAGCATTAGAG 555 |||||||||||||||||||||||||| ||||||| || || |||||||||||||| | || Sbjct 96 GTGGACACAAGAAAACGAAAGGCGGATAGTCTCAGTTGTTATGATTTGCCAGCATCAAAG 155 Query 556 AACTTGAAAGAGTTTCAGGAAACGGAAGAGAGTCCCTTGCC-CGTGGAGGAGAAA-AAC- 612 |||| ||| ||||| ||||||||||||| | ||||||||| | || ||||||| ||| Sbjct 156 TACTTTAAAAAGTTTAAGGAAACGGAAGAAAATCCCTTGCCGCC-GGCGGAGAAACAACT 214 Query 613 --------A-A-TGAAGTTCCATCGAAAGACACTTCGTTTGTCCCGGAGAAACGT-AACG 661 | | || ||||||||||||||||||||| | ||||||||||||| | || | Sbjct 215 GGCTTCCTACAATGTAGTTCCATCGAAAGACACTTCCTCTGTCCCGGAGAAA-GACAATG 273 Query 662 TTGGTCCGGGACCTGACGATGAGGTTGTTGTGATTTCTGATGACGAGGATGAGGAATACG 721 ||||||| |||||||||||||||||| | || |||||||||||||| ||||| ||||||| Sbjct 274 TTGGTCCTGGACCTGACGATGAGGTTATAGTTATTTCTGATGACGATGATGATGAATACG 333 Query 722 TGGGCCGA 729 | ||||| Sbjct 334 AGCGCCGA 341 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30269596098 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5