BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G11930.1
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943083 jgi|Araly1|943083|scaffold_603627.1 785 0.0
Ahg943087 jgi|Araly1|943087|scaffold_603631.1 270 1e-71
> Ahg943083 jgi|Araly1|943083|scaffold_603627.1
Length=842
Score = 785 bits (425), Expect = 0.0
Identities = 641/742 (86%), Gaps = 28/742 (4%)
Strand=Plus/Plus
Query 94 GGAGTTCGAGACATCGTCAACACGAACAAGGCAGTAATCAGTGAACGGCTAGAT-ACGTT 152
||||| | ||| |||| |||| |||||||| | || || |||||||||||||| | ||
Sbjct 84 GGAGTCCAAGATGTCGTGAACAAGAACAAGGTATTATTCGGTGAACGGCTAGATGA-ATT 142
Query 153 TGAGAAAGCGGCAGCTATCTCGGATGTTCTCTCGGCCGCAGAGACCCCGCTTCCCAACGG 212
||||||||| || |||||||||| |||||| |||||||||||| |||||||| |||||
Sbjct 143 TGAGAAAGCCGCGGCTATCTCGGCCGTTCTCACGGCCGCAGAGAATCCGCTTCCAAACGG 202
Query 213 GGCGACT-GATTGGTACGGCATCATTCGAATGAAA-CAGCCGGGACC-GAT-TGTAGGGG 268
|| | |||||||| || || ||| | ||||| || || ||||| | | | || ||
Sbjct 203 ATTGA-TGGATTGGTATGGGATGATTAGGGTGAAACCA-CCCGGACCTG-TCT-TATCGG 258
Query 269 AGGACTTCGAGAAGTTGATGAATCTCTTGAACTCGAGTAACAATCCTTTCCCGTTTTGCC 328
||||||||||||||||||||||||| |||||||| |||||||| |||||||| |||||||
Sbjct 259 AGGACTTCGAGAAGTTGATGAATCTATTGAACTCCAGTAACAACCCTTTCCCATTTTGCC 318
Query 329 AGGAAGCTCGTGTTAAAGCCTCGTTAGCTTGGTCGTTTCTGTCTGATCCAACCTCTAAGG 388
||||||||||||| | |||||||||||||||||||| |||||| ||||||||||| ||||
Sbjct 319 AGGAAGCTCGTGTGAGAGCCTCGTTAGCTTGGTCGTATCTGTCCGATCCAACCTCAAAGG 378
Query 389 CGAAGTACGATAA-GTCTATTTCCAGCGAGGACAACCTTGTAATCGAAGACCAAACCGGT 447
|| ||||||||| | |||| |||| | |||| |||||||||||||||||||||| || |
Sbjct 379 CGGGGTACGATAACG-CTATGTCCAACAAGGAAAACCTTGTAATCGAAGACCAAAGCGAT 437
Query 448 GACATAACCGATGGTGTTCCTCTTTGCGGAGAGGGTAGCGAAGGTGAAGTGGACACAAGA 507
||||||||||||| || | |||||||||||| |||||| ||||||||||||||||||||
Sbjct 438 GACATAACCGATGTTGGTGGTCTTTGCGGAGATGGTAGCAAAGGTGAAGTGGACACAAGA 497
Query 508 AAACGAAAGGCGGAGAGTCTCATTTTTTCTGATTTGCCAGCATTAGAGAACTTGAAAGAG 567
|||||||||||||| ||||||| || ||||||||||||||||| |||| |||||||||||
Sbjct 498 AAACGAAAGGCGGATAGTCTCACTTGTTCTGATTTGCCAGCATCAGAGTACTTGAAAGAG 557
Query 568 TTTCAGGAAACGGAAGAGAGTCCCTTGCC-CGTGGAGGAGA-A-AA-A--C----AA--- 614
|||||||| ||||| |||| ||||||||| | ||| ||||| | || | | ||
Sbjct 558 TTTCAGGAGACGGAGGAGAATCCCTTGCCGC-TGGCGGAGACACAACAGGCTCCCAACAA 616
Query 615 TGAAGTTCCATCGAAAGACACTTCGTTTGTCCCGGAGAAACGTAACGTTGGTCCGGGACC 674
|||||||||||||||||||||||| | |||||| ||||||| ||| |||||||| |||||
Sbjct 617 TGAAGTTCCATCGAAAGACACTTCCTCTGTCCCCGAGAAACATAAAGTTGGTCCTGGACC 676
Query 675 TGACGATGAGGTTGTTG-TGATTTCTGATGACGAGGATGAGGAATACGTGGGCCGAGATA 733
||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TGACGATGAGGTTGT-GATTATTTCTGATGACGAGGATGAGGAATACGTGGGCCGAGATA 735
Query 734 TTATCTCAATGGCTAGAACAGCGAAAGTGCGCATAGTTGATGGAAGGAAAGTGAAATTTG 793
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 TTATATCAATGGCTAGAACAGCGAAAGTGCGCATAGTTGATGGAAGGAAAGTGAAATTTA 795
Query 794 TCCCATTGAGGAAGAAGCAAAA 815
| ||||||||||||||||||||
Sbjct 796 TTCCATTGAGGAAGAAGCAAAA 817
> Ahg943087 jgi|Araly1|943087|scaffold_603631.1
Length=431
Score = 270 bits (146), Expect = 1e-71
Identities = 257/308 (83%), Gaps = 18/308 (6%)
Strand=Plus/Plus
Query 437 ACCAAACCGGTGACATAACCGATGGT-GTTCCTCTTTGCGGAGAGGGTAGCGAAGGTGAA 495
|||||| ||||||||||||| ||| | | | ||||||||||||||||||| ||||||||
Sbjct 37 ACCAAAGCGGTGACATAACCAATGATAG-TGGTCTTTGCGGAGAGGGTAGCAAAGGTGAA 95
Query 496 GTGGACACAAGAAAACGAAAGGCGGAGAGTCTCATTTTTTCTGATTTGCCAGCATTAGAG 555
|||||||||||||||||||||||||| ||||||| || || |||||||||||||| | ||
Sbjct 96 GTGGACACAAGAAAACGAAAGGCGGATAGTCTCAGTTGTTATGATTTGCCAGCATCAAAG 155
Query 556 AACTTGAAAGAGTTTCAGGAAACGGAAGAGAGTCCCTTGCC-CGTGGAGGAGAAA-AAC- 612
|||| ||| ||||| ||||||||||||| | ||||||||| | || ||||||| |||
Sbjct 156 TACTTTAAAAAGTTTAAGGAAACGGAAGAAAATCCCTTGCCGCC-GGCGGAGAAACAACT 214
Query 613 --------A-A-TGAAGTTCCATCGAAAGACACTTCGTTTGTCCCGGAGAAACGT-AACG 661
| | || ||||||||||||||||||||| | ||||||||||||| | || |
Sbjct 215 GGCTTCCTACAATGTAGTTCCATCGAAAGACACTTCCTCTGTCCCGGAGAAA-GACAATG 273
Query 662 TTGGTCCGGGACCTGACGATGAGGTTGTTGTGATTTCTGATGACGAGGATGAGGAATACG 721
||||||| |||||||||||||||||| | || |||||||||||||| ||||| |||||||
Sbjct 274 TTGGTCCTGGACCTGACGATGAGGTTATAGTTATTTCTGATGACGATGATGATGAATACG 333
Query 722 TGGGCCGA 729
| |||||
Sbjct 334 AGCGCCGA 341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30269596098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5